Wall clock time and date at job start Wed Apr 1 2020 04:35:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31413 * 1 3 3 Si 1.86800 * 119.99631 * 2 1 4 4 H 1.48502 * 109.47207 * 270.00286 * 3 2 1 5 5 H 1.48505 * 109.47322 * 30.00087 * 3 2 1 6 6 H 1.48497 * 109.47149 * 150.00295 * 3 2 1 7 7 C 1.38946 * 120.00420 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00356 * 179.97438 * 7 2 1 9 9 N 1.37098 * 120.00002 * 359.97438 * 7 2 1 10 10 C 1.34775 * 120.00416 * 180.02562 * 9 7 2 11 11 O 1.21291 * 119.99849 * 359.97438 * 10 9 7 12 12 C 1.50695 * 120.00245 * 180.02562 * 10 9 7 13 13 N 1.46497 * 109.46965 * 179.97438 * 12 10 9 14 14 C 1.34777 * 119.99846 * 179.97438 * 13 12 10 15 15 O 1.21582 * 120.00121 * 4.88639 * 14 13 12 16 16 N 1.34781 * 120.00270 * 184.89126 * 14 13 12 17 17 C 1.45255 * 118.08623 * 354.46408 * 16 14 13 18 18 C 1.52250 * 111.39334 * 226.68374 * 17 16 14 19 19 N 1.45003 * 111.41582 * 326.84630 * 18 17 16 20 20 C 1.46981 * 129.15210 * 29.32112 * 19 18 17 21 21 H 1.09000 * 109.87387 * 94.58174 * 20 19 18 22 22 C 1.54061 * 106.78696 * 213.69848 * 20 19 18 23 23 N 1.47583 * 108.15854 * 320.86772 * 22 20 19 24 24 S 1.66985 * 126.76089 * 208.48679 * 19 18 17 25 25 O 1.42109 * 107.15644 * 274.29542 * 24 19 18 26 26 O 1.42099 * 107.16114 * 49.24702 * 24 19 18 27 27 C 1.45009 * 118.09336 * 174.48120 * 16 14 13 28 28 H 0.97000 * 120.00299 * 359.97438 * 1 2 3 29 29 H 0.97005 * 119.99740 * 0.02562 * 9 7 2 30 30 H 1.09004 * 109.47317 * 59.99628 * 12 10 9 31 31 H 1.09004 * 109.47022 * 299.99790 * 12 10 9 32 32 H 0.97003 * 120.00362 * 359.97438 * 13 12 10 33 33 H 1.09002 * 109.09707 * 347.17438 * 17 16 14 34 34 H 1.08998 * 109.09545 * 106.19000 * 17 16 14 35 35 H 1.08997 * 109.09523 * 206.35106 * 18 17 16 36 36 H 1.08995 * 109.09255 * 87.34441 * 18 17 16 37 37 H 1.08992 * 109.73671 * 201.18312 * 22 20 19 38 38 H 1.09004 * 109.71488 * 80.54217 * 22 20 19 39 39 H 0.97005 * 127.52808 * 204.41853 * 23 22 20 40 40 H 1.08995 * 108.90614 * 14.01835 * 27 16 14 41 41 H 1.08996 * 108.83514 * 255.45280 * 27 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 2.4955 2.0466 -1.4001 5 1 1.4454 2.6527 0.7001 6 1 3.5456 1.4403 0.7000 7 6 2.0090 -1.2033 -0.0005 8 1 3.0889 -1.2032 -0.0010 9 7 1.3235 -2.3906 -0.0005 10 6 1.9974 -3.5578 -0.0005 11 8 3.2103 -3.5578 -0.0010 12 6 1.2440 -4.8629 -0.0011 13 7 2.1961 -5.9763 -0.0016 14 6 1.7469 -7.2470 -0.0017 15 8 0.5551 -7.4705 -0.0910 16 7 2.6187 -8.2701 0.0974 17 6 4.0383 -7.9630 0.0787 18 6 4.7937 -8.8858 -0.8679 19 7 4.2002 -10.2083 -0.9039 20 6 2.8002 -10.6032 -0.6930 21 1 2.2863 -10.6726 -1.6517 22 6 2.8255 -11.9845 -0.0111 23 7 3.9116 -12.7776 -0.6189 24 16 4.9848 -11.6475 -1.2223 25 8 5.0117 -11.8068 -2.6342 26 8 6.1416 -11.6856 -0.3980 27 6 2.0850 -9.6131 0.2161 28 1 -0.4850 0.8400 0.0004 29 1 0.3535 -2.3906 -0.0005 30 1 0.6176 -4.9205 -0.8914 31 1 0.6170 -4.9209 0.8887 32 1 3.1498 -5.7991 -0.0019 33 1 4.1758 -6.9310 -0.2442 34 1 4.4412 -8.0772 1.0850 35 1 5.8284 -8.9684 -0.5352 36 1 4.7759 -8.4596 -1.8709 37 1 1.8714 -12.4884 -0.1649 38 1 3.0104 -11.8643 1.0564 39 1 3.9863 -13.7440 -0.6592 40 1 1.0265 -9.5967 -0.0434 41 1 2.1896 -9.9433 1.2495 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001312662166.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:35:12 Heat of formation + Delta-G solvation = -92.861758 kcal Electronic energy + Delta-G solvation = -28649.991379 eV Core-core repulsion = 24307.355230 eV Total energy + Delta-G solvation = -4342.636149 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 347.114 amu Computer time = 2.17 seconds Orbital eigenvalues (eV) -40.84557 -38.98080 -38.15446 -37.47371 -36.31426 -36.00084 -34.63959 -34.06416 -33.80464 -31.93733 -31.40399 -28.45009 -27.48678 -25.75388 -24.38342 -24.07907 -21.58322 -20.42169 -19.79702 -19.37688 -18.66576 -18.33496 -18.06757 -17.43639 -16.66872 -16.26781 -16.16329 -15.79981 -15.66569 -15.51014 -15.00042 -14.69434 -14.64858 -14.44548 -14.15616 -13.93062 -13.60164 -13.46972 -12.92486 -12.78853 -12.59692 -12.44480 -12.32280 -12.20286 -12.00359 -11.97326 -11.76424 -11.65777 -11.27928 -11.15202 -10.48619 -10.35432 -10.26143 -10.14323 -9.69069 -9.67181 -9.05003 -8.68115 -8.61608 -8.13919 -6.54831 -3.97035 0.05955 2.14526 2.44495 2.87726 3.08954 3.14112 3.20325 3.25330 3.42540 3.61460 3.70247 3.82678 4.09123 4.19354 4.38389 4.53793 4.64121 4.74958 4.80570 4.86599 4.94965 5.02641 5.13801 5.14009 5.30820 5.33047 5.39752 5.58321 5.83026 5.93456 6.01986 6.06788 6.35714 6.50373 6.60955 6.74713 7.42833 7.88454 7.95548 8.40609 8.57029 9.01015 9.35320 9.82699 10.61925 Molecular weight = 347.11amu Principal moments of inertia in cm(-1) A = 0.028417 B = 0.002070 C = 0.001971 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 985.075567 B =13520.419629 C =14198.984627 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.026 3.974 3 Si 0.933 3.067 4 H -0.277 1.277 5 H -0.282 1.282 6 H -0.269 1.269 7 C -0.305 4.305 8 H 0.106 0.894 9 N -0.548 5.548 10 C 0.428 3.572 11 O -0.599 6.599 12 C 0.126 3.874 13 N -0.722 5.722 14 C 0.704 3.296 15 O -0.590 6.590 16 N -0.619 5.619 17 C 0.102 3.898 18 C 0.145 3.855 19 N -0.989 5.989 20 C 0.087 3.913 21 H 0.103 0.897 22 C 0.079 3.921 23 N -1.115 6.115 24 S 2.771 3.229 25 O -0.974 6.974 26 O -0.977 6.977 27 C 0.139 3.861 28 H 0.275 0.725 29 H 0.396 0.604 30 H 0.084 0.916 31 H 0.083 0.917 32 H 0.407 0.593 33 H 0.101 0.899 34 H 0.076 0.924 35 H 0.095 0.905 36 H 0.071 0.929 37 H 0.110 0.890 38 H 0.088 0.912 39 H 0.439 0.561 40 H 0.114 0.886 41 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.894 -23.993 0.994 24.327 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.177 4.177 3 Si 0.760 3.240 4 H -0.203 1.203 5 H -0.208 1.208 6 H -0.193 1.193 7 C -0.435 4.435 8 H 0.124 0.876 9 N -0.182 5.182 10 C 0.213 3.787 11 O -0.486 6.486 12 C -0.002 4.002 13 N -0.382 5.382 14 C 0.405 3.595 15 O -0.469 6.469 16 N -0.356 5.356 17 C -0.024 4.024 18 C 0.019 3.981 19 N -0.833 5.833 20 C -0.022 4.022 21 H 0.121 0.879 22 C -0.049 4.049 23 N -0.884 5.884 24 S 2.779 3.221 25 O -0.955 6.955 26 O -0.959 6.959 27 C 0.014 3.986 28 H 0.085 0.915 29 H 0.230 0.770 30 H 0.102 0.898 31 H 0.101 0.899 32 H 0.248 0.752 33 H 0.119 0.881 34 H 0.094 0.906 35 H 0.113 0.887 36 H 0.089 0.911 37 H 0.128 0.872 38 H 0.107 0.893 39 H 0.280 0.720 40 H 0.132 0.868 41 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 4.665 -23.927 0.512 24.383 hybrid contribution -0.206 0.576 0.150 0.630 sum 4.459 -23.350 0.662 23.781 Atomic orbital electron populations 1.69612 1.06018 1.28582 1.49182 1.25332 0.95672 0.99969 0.96733 0.85808 0.79220 0.80458 0.78510 1.20251 1.20798 1.19310 1.19724 0.93461 0.81957 1.48320 0.87648 1.41789 1.09515 1.04461 1.62462 1.19722 0.88281 0.84976 0.85702 1.90486 1.13734 1.86847 1.57540 1.20830 0.91221 0.84872 1.03281 1.45045 1.11461 1.03313 1.78354 1.15824 0.84933 0.80826 0.77879 1.90898 1.14126 1.83774 1.58074 1.45939 1.05415 1.05541 1.78712 1.21386 0.80804 0.99688 1.00502 1.20950 0.96563 0.79928 1.00635 1.56732 1.17084 1.20454 1.89005 1.22352 0.84766 0.93643 1.01396 0.87922 1.22596 0.94348 0.89236 0.98741 1.55156 1.38479 1.18344 1.76425 1.02844 0.71785 0.73501 0.73997 1.93671 1.85519 1.85040 1.31310 1.93634 1.47792 1.85703 1.68764 1.20758 0.99694 0.79981 0.98212 0.91550 0.76997 0.89824 0.89915 0.75154 0.88133 0.90561 0.88715 0.91063 0.87162 0.89348 0.71970 0.86825 0.91043 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 48. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.41 13.05 55.50 0.72 -22.69 16 2 C 0.03 0.67 5.50 -17.47 -0.10 0.57 16 3 Si 0.93 20.15 29.55 -169.99 -5.02 15.13 16 4 H -0.28 -5.92 7.11 56.52 0.40 -5.52 16 5 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 6 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 7 C -0.31 -8.09 9.68 -14.93 -0.14 -8.23 16 8 H 0.11 2.91 7.16 -52.49 -0.38 2.53 16 9 N -0.55 -13.15 5.29 -10.97 -0.06 -13.21 16 10 C 0.43 9.38 7.85 -10.99 -0.09 9.30 16 11 O -0.60 -14.63 15.24 5.55 0.08 -14.55 16 12 C 0.13 2.21 6.16 -5.20 -0.03 2.17 16 13 N -0.72 -11.24 5.38 -66.42 -0.36 -11.60 16 14 C 0.70 10.36 8.18 -86.91 -0.71 9.65 16 15 O -0.59 -10.28 15.50 5.29 0.08 -10.20 16 16 N -0.62 -6.73 3.03 -182.51 -0.55 -7.29 16 17 C 0.10 0.91 6.39 -5.09 -0.03 0.88 16 18 C 0.14 1.19 7.09 -5.23 -0.04 1.15 16 19 N -0.99 -8.33 3.65 -108.30 -0.40 -8.73 16 20 C 0.09 0.58 3.69 -67.49 -0.25 0.33 16 21 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 22 C 0.08 0.33 6.86 -2.90 -0.02 0.31 16 23 N -1.12 -6.13 7.31 -9.46 -0.07 -6.20 16 24 S 2.77 25.64 6.36 -107.50 -0.68 24.95 16 25 O -0.97 -12.39 18.17 -57.04 -1.04 -13.43 16 26 O -0.98 -11.92 18.17 -57.04 -1.04 -12.96 16 27 C 0.14 1.13 6.01 -5.22 -0.03 1.10 16 28 H 0.27 6.80 8.31 -40.82 -0.34 6.46 16 29 H 0.40 9.15 7.90 -40.82 -0.32 8.83 16 30 H 0.08 1.42 8.14 -51.93 -0.42 1.00 16 31 H 0.08 1.38 8.14 -51.93 -0.42 0.96 16 32 H 0.41 6.13 4.76 -40.82 -0.19 5.94 16 33 H 0.10 0.94 5.46 -51.93 -0.28 0.66 16 34 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.11 0.19 8.14 -51.93 -0.42 -0.24 16 38 H 0.09 0.29 7.54 -51.93 -0.39 -0.10 16 39 H 0.44 1.44 8.96 -40.67 -0.36 1.07 16 40 H 0.11 1.01 6.73 -51.93 -0.35 0.66 16 41 H 0.07 0.45 7.37 -51.93 -0.38 0.07 16 LS Contribution 350.63 15.07 5.28 5.28 Total: -1.00 -36.86 350.63 -9.24 -46.10 By element: Atomic # 1 Polarization: 16.90 SS G_CDS: -4.76 Total: 12.14 kcal Atomic # 6 Polarization: 18.68 SS G_CDS: -1.44 Total: 17.24 kcal Atomic # 7 Polarization: -69.00 SS G_CDS: -0.71 Total: -69.71 kcal Atomic # 8 Polarization: -49.23 SS G_CDS: -1.91 Total: -51.14 kcal Atomic # 14 Polarization: 20.15 SS G_CDS: -5.02 Total: 15.13 kcal Atomic # 16 Polarization: 25.64 SS G_CDS: -0.68 Total: 24.95 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -36.86 -9.24 -46.10 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001312662166.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.763 kcal (2) G-P(sol) polarization free energy of solvation -36.862 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.625 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.236 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.099 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.862 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.17 seconds