Wall clock time and date at job start Wed Apr 1 2020 04:35:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31413 * 1 3 3 Si 1.86800 * 119.99631 * 2 1 4 4 H 1.48502 * 109.47207 * 270.00286 * 3 2 1 5 5 H 1.48505 * 109.47322 * 30.00087 * 3 2 1 6 6 H 1.48497 * 109.47149 * 150.00295 * 3 2 1 7 7 C 1.38946 * 120.00420 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00356 * 179.97438 * 7 2 1 9 9 N 1.37098 * 120.00002 * 359.97438 * 7 2 1 10 10 C 1.34775 * 120.00416 * 180.02562 * 9 7 2 11 11 O 1.21291 * 119.99849 * 359.97438 * 10 9 7 12 12 C 1.50695 * 120.00245 * 180.02562 * 10 9 7 13 13 N 1.46497 * 109.46965 * 179.97438 * 12 10 9 14 14 C 1.34777 * 119.99846 * 179.97438 * 13 12 10 15 15 O 1.21582 * 120.00121 * 4.88639 * 14 13 12 16 16 N 1.34781 * 120.00270 * 184.89126 * 14 13 12 17 17 C 1.45255 * 118.08623 * 354.46408 * 16 14 13 18 18 C 1.52250 * 111.39334 * 226.68374 * 17 16 14 19 19 N 1.45003 * 111.41582 * 326.84630 * 18 17 16 20 20 C 1.46981 * 129.15210 * 29.32112 * 19 18 17 21 21 H 1.09000 * 109.87387 * 94.58174 * 20 19 18 22 22 C 1.54061 * 106.78696 * 213.69848 * 20 19 18 23 23 N 1.47583 * 108.15854 * 320.86772 * 22 20 19 24 24 S 1.66985 * 126.76089 * 208.48679 * 19 18 17 25 25 O 1.42109 * 107.15644 * 274.29542 * 24 19 18 26 26 O 1.42099 * 107.16114 * 49.24702 * 24 19 18 27 27 C 1.45009 * 118.09336 * 174.48120 * 16 14 13 28 28 H 0.97000 * 120.00299 * 359.97438 * 1 2 3 29 29 H 0.97005 * 119.99740 * 0.02562 * 9 7 2 30 30 H 1.09004 * 109.47317 * 59.99628 * 12 10 9 31 31 H 1.09004 * 109.47022 * 299.99790 * 12 10 9 32 32 H 0.97003 * 120.00362 * 359.97438 * 13 12 10 33 33 H 1.09002 * 109.09707 * 347.17438 * 17 16 14 34 34 H 1.08998 * 109.09545 * 106.19000 * 17 16 14 35 35 H 1.08997 * 109.09523 * 206.35106 * 18 17 16 36 36 H 1.08995 * 109.09255 * 87.34441 * 18 17 16 37 37 H 1.08992 * 109.73671 * 201.18312 * 22 20 19 38 38 H 1.09004 * 109.71488 * 80.54217 * 22 20 19 39 39 H 0.97005 * 127.52808 * 204.41853 * 23 22 20 40 40 H 1.08995 * 108.90614 * 14.01835 * 27 16 14 41 41 H 1.08996 * 108.83514 * 255.45280 * 27 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 2.4955 2.0466 -1.4001 5 1 1.4454 2.6527 0.7001 6 1 3.5456 1.4403 0.7000 7 6 2.0090 -1.2033 -0.0005 8 1 3.0889 -1.2032 -0.0010 9 7 1.3235 -2.3906 -0.0005 10 6 1.9974 -3.5578 -0.0005 11 8 3.2103 -3.5578 -0.0010 12 6 1.2440 -4.8629 -0.0011 13 7 2.1961 -5.9763 -0.0016 14 6 1.7469 -7.2470 -0.0017 15 8 0.5551 -7.4705 -0.0910 16 7 2.6187 -8.2701 0.0974 17 6 4.0383 -7.9630 0.0787 18 6 4.7937 -8.8858 -0.8679 19 7 4.2002 -10.2083 -0.9039 20 6 2.8002 -10.6032 -0.6930 21 1 2.2863 -10.6726 -1.6517 22 6 2.8255 -11.9845 -0.0111 23 7 3.9116 -12.7776 -0.6189 24 16 4.9848 -11.6475 -1.2223 25 8 5.0117 -11.8068 -2.6342 26 8 6.1416 -11.6856 -0.3980 27 6 2.0850 -9.6131 0.2161 28 1 -0.4850 0.8400 0.0004 29 1 0.3535 -2.3906 -0.0005 30 1 0.6176 -4.9205 -0.8914 31 1 0.6170 -4.9209 0.8887 32 1 3.1498 -5.7991 -0.0019 33 1 4.1758 -6.9310 -0.2442 34 1 4.4412 -8.0772 1.0850 35 1 5.8284 -8.9684 -0.5352 36 1 4.7759 -8.4596 -1.8709 37 1 1.8714 -12.4884 -0.1649 38 1 3.0104 -11.8643 1.0564 39 1 3.9863 -13.7440 -0.6592 40 1 1.0265 -9.5967 -0.0434 41 1 2.1896 -9.9433 1.2495 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001312662166.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:35:11 Heat of formation + Delta-G solvation = -126.615558 kcal Electronic energy + Delta-G solvation = -28651.455053 eV Core-core repulsion = 24307.355230 eV Total energy + Delta-G solvation = -4344.099824 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 347.114 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.83389 -40.27460 -39.42289 -38.31389 -37.11611 -36.77979 -36.26784 -35.38832 -34.81092 -33.35510 -32.58934 -29.63910 -28.44141 -26.82292 -25.84882 -24.73636 -22.42436 -21.43253 -21.12734 -20.47998 -20.04600 -19.39064 -19.02665 -18.29736 -17.67536 -17.29253 -17.14444 -16.99662 -16.55216 -16.42070 -16.35298 -16.06701 -15.82383 -15.52002 -15.38362 -15.11572 -14.65789 -14.30571 -14.05963 -13.76259 -13.53696 -13.45011 -13.42631 -13.28512 -13.22013 -13.19512 -12.89329 -12.62134 -12.44047 -12.40453 -12.11659 -12.01027 -11.55088 -11.33137 -10.78156 -10.53214 -10.38952 -10.19557 -10.06902 -9.51149 -8.49374 -5.99174 -0.63862 1.36039 1.37845 1.44953 1.56767 1.68434 1.90919 2.00983 2.19084 2.29489 2.74325 2.90885 3.10410 3.16222 3.18303 3.63056 3.75972 3.87822 4.02017 4.12239 4.18720 4.26310 4.43533 4.48329 4.49189 4.56267 4.67880 4.74247 4.76467 4.79375 4.94966 5.29378 5.40007 5.40883 5.57432 5.73986 5.94276 6.17885 6.49881 6.82360 7.05632 7.39934 7.48618 7.96677 8.67469 Molecular weight = 347.11amu Principal moments of inertia in cm(-1) A = 0.028417 B = 0.002070 C = 0.001971 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 985.075567 B =13520.419629 C =14198.984627 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C -0.011 4.011 3 Si 0.995 3.005 4 H -0.271 1.271 5 H -0.273 1.273 6 H -0.270 1.270 7 C -0.335 4.335 8 H 0.087 0.913 9 N -0.560 5.560 10 C 0.434 3.566 11 O -0.624 6.624 12 C 0.140 3.860 13 N -0.725 5.725 14 C 0.703 3.297 15 O -0.619 6.619 16 N -0.612 5.612 17 C 0.100 3.900 18 C 0.140 3.860 19 N -0.991 5.991 20 C 0.083 3.917 21 H 0.103 0.897 22 C 0.080 3.920 23 N -1.101 6.101 24 S 2.785 3.215 25 O -1.014 7.014 26 O -1.009 7.009 27 C 0.134 3.866 28 H 0.279 0.721 29 H 0.399 0.601 30 H 0.092 0.908 31 H 0.095 0.905 32 H 0.410 0.590 33 H 0.094 0.906 34 H 0.094 0.906 35 H 0.109 0.891 36 H 0.069 0.931 37 H 0.143 0.857 38 H 0.106 0.894 39 H 0.451 0.549 40 H 0.107 0.893 41 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.651 -25.126 1.758 25.450 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.212 4.212 3 Si 0.819 3.181 4 H -0.197 1.197 5 H -0.198 1.198 6 H -0.194 1.194 7 C -0.464 4.464 8 H 0.105 0.895 9 N -0.195 5.195 10 C 0.221 3.779 11 O -0.512 6.512 12 C 0.012 3.988 13 N -0.385 5.385 14 C 0.405 3.595 15 O -0.500 6.500 16 N -0.348 5.348 17 C -0.025 4.025 18 C 0.015 3.985 19 N -0.835 5.835 20 C -0.024 4.024 21 H 0.121 0.879 22 C -0.047 4.047 23 N -0.874 5.874 24 S 2.793 3.207 25 O -0.996 6.996 26 O -0.991 6.991 27 C 0.009 3.991 28 H 0.089 0.911 29 H 0.233 0.767 30 H 0.110 0.890 31 H 0.113 0.887 32 H 0.251 0.749 33 H 0.112 0.888 34 H 0.112 0.888 35 H 0.127 0.873 36 H 0.087 0.913 37 H 0.161 0.839 38 H 0.124 0.876 39 H 0.296 0.704 40 H 0.125 0.875 41 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 4.440 -25.121 1.275 25.543 hybrid contribution -0.138 0.828 -0.080 0.844 sum 4.302 -24.293 1.195 24.700 Atomic orbital electron populations 1.69676 1.06971 1.29580 1.49406 1.26104 0.96517 1.02639 0.95899 0.84887 0.77952 0.76627 0.78643 1.19686 1.19766 1.19413 1.19720 0.92954 0.83516 1.50228 0.89525 1.41839 1.09619 1.04603 1.63479 1.20424 0.88131 0.85900 0.83437 1.90466 1.15144 1.87558 1.58000 1.20609 0.90985 0.83008 1.04209 1.44989 1.11202 1.03389 1.78960 1.15906 0.84987 0.80980 0.77675 1.90878 1.15481 1.84190 1.59466 1.46028 1.05690 1.05719 1.77389 1.21502 0.79782 0.99526 1.01669 1.21028 0.97288 0.79727 1.00465 1.56639 1.17824 1.20049 1.88987 1.22520 0.83554 0.94774 1.01597 0.87876 1.22788 0.95260 0.87643 0.99047 1.54841 1.37932 1.18560 1.76050 1.02169 0.71680 0.73868 0.72979 1.93625 1.86280 1.85769 1.33888 1.93594 1.50040 1.86337 1.69146 1.20987 0.99331 0.78751 0.99985 0.91118 0.76683 0.89042 0.88707 0.74860 0.88772 0.88833 0.87305 0.91309 0.83876 0.87604 0.70441 0.87504 0.88539 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -47.88 13.05 21.66 0.28 -47.59 16 2 C -0.01 -0.56 5.50 84.93 0.47 -0.09 16 3 Si 1.00 41.07 29.55 68.60 2.03 43.10 16 4 H -0.27 -10.92 7.11 99.48 0.71 -10.21 16 5 H -0.27 -10.76 7.11 99.48 0.71 -10.05 16 6 H -0.27 -11.06 7.11 99.48 0.71 -10.35 16 7 C -0.33 -18.00 9.68 84.04 0.81 -17.19 16 8 H 0.09 4.90 7.16 -2.91 -0.02 4.88 16 9 N -0.56 -27.24 5.29 -307.00 -1.62 -28.86 16 10 C 0.43 19.14 7.85 87.66 0.69 19.83 16 11 O -0.62 -30.73 15.24 -3.06 -0.05 -30.77 16 12 C 0.14 4.83 6.16 85.63 0.53 5.36 16 13 N -0.73 -22.06 5.38 -482.30 -2.59 -24.66 16 14 C 0.70 19.92 8.18 179.05 1.46 21.38 16 15 O -0.62 -20.96 15.50 -3.98 -0.06 -21.02 16 16 N -0.61 -12.33 3.03 -849.61 -2.57 -14.91 16 17 C 0.10 1.66 6.39 86.37 0.55 2.21 16 18 C 0.14 2.15 7.09 86.41 0.61 2.76 16 19 N -0.99 -15.18 3.65 -496.55 -1.81 -17.00 16 20 C 0.08 0.93 3.69 45.01 0.17 1.10 16 21 H 0.10 1.15 8.14 -2.39 -0.02 1.13 16 22 C 0.08 0.39 6.86 86.53 0.59 0.98 16 23 N -1.10 -9.37 7.31 -183.83 -1.34 -10.71 16 24 S 2.78 48.50 6.36 -56.49 -0.36 48.14 16 25 O -1.01 -25.53 18.17 -128.13 -2.33 -27.86 16 26 O -1.01 -23.81 18.17 -128.13 -2.33 -26.13 16 27 C 0.13 1.86 6.01 86.41 0.52 2.38 16 28 H 0.28 13.68 8.31 -92.71 -0.77 12.91 16 29 H 0.40 18.67 7.90 -92.70 -0.73 17.93 16 30 H 0.09 3.04 8.14 -2.38 -0.02 3.02 16 31 H 0.09 3.07 8.14 -2.38 -0.02 3.05 16 32 H 0.41 12.14 4.76 -92.71 -0.44 11.70 16 33 H 0.09 1.70 5.46 -2.39 -0.01 1.68 16 34 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 35 H 0.11 1.36 8.14 -2.39 -0.02 1.34 16 36 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 37 H 0.14 -0.15 8.14 -2.39 -0.02 -0.17 16 38 H 0.11 0.24 7.54 -2.39 -0.02 0.23 16 39 H 0.45 1.80 8.96 -92.80 -0.83 0.97 16 40 H 0.11 1.70 6.73 -2.39 -0.02 1.69 16 41 H 0.10 0.89 7.37 -2.39 -0.02 0.87 16 Total: -1.00 -79.39 350.63 -7.23 -86.63 By element: Atomic # 1 Polarization: 33.80 SS G_CDS: -0.88 Total: 32.93 kcal Atomic # 6 Polarization: 32.32 SS G_CDS: 6.41 Total: 38.72 kcal Atomic # 7 Polarization: -134.06 SS G_CDS: -9.66 Total: -143.72 kcal Atomic # 8 Polarization: -101.03 SS G_CDS: -4.76 Total: -105.79 kcal Atomic # 14 Polarization: 41.07 SS G_CDS: 2.03 Total: 43.10 kcal Atomic # 16 Polarization: 48.50 SS G_CDS: -0.36 Total: 48.14 kcal Total: -79.39 -7.23 -86.63 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001312662166.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.989 kcal (2) G-P(sol) polarization free energy of solvation -79.394 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.383 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.232 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.626 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.616 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds