Wall clock time and date at job start Wed Apr 1 2020 04:20:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30747 * 1 3 3 Si 1.86798 * 119.99939 * 2 1 4 4 H 1.48501 * 109.47099 * 274.98538 * 3 2 1 5 5 H 1.48498 * 109.47181 * 34.98826 * 3 2 1 6 6 H 1.48502 * 109.47021 * 154.98638 * 3 2 1 7 7 C 1.40027 * 120.00076 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00143 * 186.34651 * 7 2 1 9 9 C 1.41320 * 120.00013 * 6.34537 * 7 2 1 10 10 C 1.40587 * 119.78474 * 173.77864 * 9 7 2 11 11 C 1.38349 * 119.14603 * 180.02562 * 10 9 7 12 12 C 1.38635 * 118.68261 * 359.97438 * 11 10 9 13 13 C 1.39761 * 119.49200 * 0.02562 * 12 11 10 14 14 N 1.38828 * 119.58398 * 179.97438 * 13 12 11 15 15 C 1.46499 * 119.99845 * 359.97438 * 14 13 12 16 16 C 1.53005 * 109.46536 * 180.02562 * 15 14 13 17 17 N 1.46499 * 109.46536 * 180.02562 * 16 15 14 18 18 S 1.65602 * 120.00053 * 165.00099 * 17 16 15 19 19 O 1.42100 * 106.40186 * 311.46149 * 18 17 16 20 20 O 1.42095 * 106.40716 * 178.54009 * 18 17 16 21 21 C 1.76203 * 107.21824 * 64.99553 * 18 17 16 22 22 C 1.38236 * 119.99835 * 90.00073 * 21 18 17 23 23 C 1.38232 * 120.00094 * 179.97438 * 22 21 18 24 24 C 1.38238 * 120.00145 * 359.97438 * 23 22 21 25 25 C 1.38235 * 119.99740 * 0.27763 * 24 23 22 26 26 C 1.38231 * 120.00098 * 269.98559 * 21 18 17 27 27 N 1.31984 * 120.82742 * 0.25102 * 13 12 11 28 28 H 0.96998 * 119.99645 * 359.97438 * 1 2 3 29 29 H 1.07997 * 120.42544 * 0.02562 * 10 9 7 30 30 H 1.08006 * 120.65560 * 179.97438 * 11 10 9 31 31 H 1.07995 * 120.25647 * 180.02562 * 12 11 10 32 32 H 0.96998 * 119.99556 * 179.97438 * 14 13 12 33 33 H 1.09000 * 109.46813 * 60.00083 * 15 14 13 34 34 H 1.08997 * 109.46981 * 299.99864 * 15 14 13 35 35 H 1.08992 * 109.46880 * 60.00469 * 16 15 14 36 36 H 1.08997 * 109.47355 * 299.99610 * 16 15 14 37 37 H 0.97006 * 120.00664 * 345.00051 * 17 16 15 38 38 H 1.08003 * 119.99836 * 359.97438 * 22 21 18 39 39 H 1.08001 * 119.99901 * 180.02562 * 23 22 21 40 40 H 1.07992 * 120.00191 * 179.97438 * 24 23 22 41 41 H 1.08001 * 120.00367 * 179.72572 * 25 24 23 42 42 H 1.08002 * 120.00276 * 359.97438 * 26 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3075 0.0000 0.0000 3 14 2.2414 1.6177 0.0000 4 1 2.3836 2.1072 -1.3948 5 1 1.4956 2.6199 0.8028 6 1 3.5877 1.4120 0.5920 7 6 2.0076 -1.2127 -0.0005 8 1 3.0827 -1.2156 0.1028 9 6 1.3075 -2.4327 -0.1364 10 6 2.0215 -3.6366 -0.2681 11 6 1.3228 -4.8233 -0.4008 12 6 -0.0630 -4.7834 -0.3986 13 6 -0.7157 -3.5549 -0.2640 14 7 -2.1033 -3.5126 -0.2620 15 6 -2.8741 -4.7507 -0.4011 16 6 -4.3691 -4.4269 -0.3688 17 7 -5.1398 -5.6651 -0.5072 18 16 -6.7544 -5.6809 -0.1392 19 8 -6.8827 -5.0555 1.1303 20 8 -7.2140 -6.9987 -0.4064 21 6 -7.5636 -4.6274 -1.2968 22 6 -8.0396 -5.1449 -2.4870 23 6 -8.6749 -4.3185 -3.3950 24 6 -8.8346 -2.9748 -3.1126 25 6 -8.3540 -2.4563 -1.9247 26 6 -7.7226 -3.2835 -1.0147 27 7 -0.0294 -2.4339 -0.1441 28 1 -0.4849 0.8401 0.0004 29 1 3.1014 -3.6351 -0.2658 30 1 1.8466 -5.7622 -0.5040 31 1 -0.6338 -5.6945 -0.5001 32 1 -2.5625 -2.6633 -0.1686 33 1 -2.6300 -5.4247 0.4200 34 1 -2.6265 -5.2282 -1.3491 35 1 -4.6127 -3.7531 -1.1901 36 1 -4.6170 -3.9491 0.5790 37 1 -4.7045 -6.4757 -0.8144 38 1 -7.9152 -6.1948 -2.7075 39 1 -9.0472 -4.7229 -4.3246 40 1 -9.3305 -2.3291 -3.8221 41 1 -8.4748 -1.4056 -1.7060 42 1 -7.3513 -2.8794 -0.0846 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001320364187.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:20:18 Heat of formation + Delta-G solvation = -28.530828 kcal Electronic energy + Delta-G solvation = -26673.998017 eV Core-core repulsion = 22745.000730 eV Total energy + Delta-G solvation = -3928.997288 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.109 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.13349 -40.04129 -38.45862 -37.74301 -37.04168 -35.78622 -34.80346 -32.30888 -32.28416 -32.01171 -31.16700 -28.44151 -27.19576 -24.28382 -24.12340 -23.69712 -23.13751 -22.16133 -20.61805 -19.34189 -19.11112 -18.58301 -18.16057 -17.17726 -17.06290 -16.59136 -16.46529 -16.30352 -16.02684 -15.86100 -15.55433 -15.39031 -14.95991 -14.60110 -14.49452 -14.43782 -14.02587 -13.75684 -13.41672 -13.36914 -13.30056 -13.24878 -13.17462 -12.82878 -12.71616 -12.64142 -12.41281 -12.23129 -12.17456 -11.81394 -11.71797 -11.27520 -10.72265 -10.55484 -10.42106 -10.04607 -9.81110 -9.43052 -8.29948 -8.22286 -6.45274 -0.73103 -0.20210 0.29750 1.07709 1.36285 1.43538 1.56980 1.59627 1.82781 2.26970 2.47185 2.67848 2.81427 2.93982 3.25896 3.69301 3.83636 3.93560 4.02491 4.09677 4.14209 4.35373 4.37949 4.38098 4.43845 4.52342 4.70099 4.75445 4.91908 4.94558 4.95105 5.02133 5.02963 5.07571 5.15874 5.26385 5.38076 5.38863 5.73466 5.85891 5.96384 5.99216 6.08141 6.25100 6.55911 6.85180 6.95858 7.22777 8.35595 8.52789 Molecular weight = 347.11amu Principal moments of inertia in cm(-1) A = 0.013184 B = 0.002391 C = 0.002141 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2123.226344 B =11709.374091 C =13077.273900 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.750 5.750 2 C 0.027 3.973 3 Si 0.985 3.015 4 H -0.265 1.265 5 H -0.268 1.268 6 H -0.258 1.258 7 C -0.472 4.472 8 H 0.085 0.915 9 C 0.259 3.741 10 C -0.344 4.344 11 C -0.031 4.031 12 C -0.366 4.366 13 C 0.395 3.605 14 N -0.733 5.733 15 C 0.135 3.865 16 C 0.113 3.887 17 N -1.103 6.103 18 S 2.719 3.281 19 O -0.986 6.986 20 O -0.981 6.981 21 C -0.685 4.685 22 C -0.035 4.035 23 C -0.146 4.146 24 C -0.064 4.064 25 C -0.148 4.148 26 C -0.040 4.040 27 N -0.565 5.565 28 H 0.277 0.723 29 H 0.101 0.899 30 H 0.129 0.871 31 H 0.122 0.878 32 H 0.397 0.603 33 H 0.064 0.936 34 H 0.071 0.929 35 H 0.085 0.915 36 H 0.085 0.915 37 H 0.430 0.570 38 H 0.149 0.851 39 H 0.158 0.842 40 H 0.159 0.841 41 H 0.152 0.848 42 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.644 -5.587 -7.208 20.755 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.372 5.372 2 C -0.195 4.195 3 Si 0.805 3.195 4 H -0.190 1.190 5 H -0.193 1.193 6 H -0.182 1.182 7 C -0.504 4.504 8 H 0.103 0.897 9 C 0.132 3.868 10 C -0.367 4.367 11 C -0.055 4.055 12 C -0.392 4.392 13 C 0.155 3.845 14 N -0.370 5.370 15 C 0.009 3.991 16 C -0.013 4.013 17 N -0.865 5.865 18 S 2.811 3.189 19 O -0.976 6.976 20 O -0.971 6.971 21 C -0.774 4.774 22 C -0.054 4.054 23 C -0.164 4.164 24 C -0.082 4.082 25 C -0.167 4.167 26 C -0.060 4.060 27 N -0.288 5.288 28 H 0.087 0.913 29 H 0.119 0.881 30 H 0.147 0.853 31 H 0.140 0.860 32 H 0.231 0.769 33 H 0.082 0.918 34 H 0.089 0.911 35 H 0.104 0.896 36 H 0.103 0.897 37 H 0.268 0.732 38 H 0.167 0.833 39 H 0.176 0.824 40 H 0.177 0.823 41 H 0.170 0.830 42 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -19.776 -5.214 -6.387 21.425 hybrid contribution 0.928 0.257 -0.599 1.133 sum -18.848 -4.957 -6.985 20.703 Atomic orbital electron populations 1.70231 1.08665 1.28692 1.29593 1.26920 0.95756 1.04223 0.92577 0.85166 0.79106 0.76077 0.79116 1.19001 1.19260 1.18157 1.19922 0.94981 0.90699 1.44808 0.89710 1.18662 0.87642 0.93093 0.87423 1.21701 0.98992 0.94231 1.21752 1.21023 0.93889 0.97049 0.93544 1.20980 0.94907 0.96590 1.26685 1.18899 0.85743 0.90310 0.89592 1.44037 1.01543 1.09030 1.82365 1.21294 0.88961 0.86788 1.02051 1.21319 0.90833 0.85761 1.03426 1.55082 1.26765 1.19044 1.85659 1.00876 0.72018 0.72658 0.73386 1.93561 1.85947 1.78272 1.39857 1.93557 1.80099 1.37278 1.86171 1.30701 1.20627 1.10334 1.15760 1.21220 0.92348 1.01001 0.90830 1.21702 0.99836 0.94202 1.00688 1.21949 0.94168 0.95831 0.96267 1.21682 0.98996 1.01401 0.94581 1.21210 0.93960 0.91474 0.99310 1.68156 1.08175 1.26008 1.26431 0.91293 0.88091 0.85336 0.86020 0.76865 0.91818 0.91073 0.89642 0.89698 0.73249 0.83305 0.82413 0.82322 0.82995 0.84025 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.75 -39.91 11.49 21.84 0.25 -39.66 16 2 C 0.03 1.39 5.49 85.29 0.47 1.86 16 3 Si 0.98 38.29 29.56 68.60 2.03 40.32 16 4 H -0.27 -9.98 7.11 99.48 0.71 -9.27 16 5 H -0.27 -9.91 7.11 99.48 0.71 -9.20 16 6 H -0.26 -9.74 7.11 99.48 0.71 -9.03 16 7 C -0.47 -26.10 9.13 23.46 0.21 -25.88 16 8 H 0.08 4.43 7.86 -2.91 -0.02 4.41 16 9 C 0.26 14.67 6.54 40.19 0.26 14.93 16 10 C -0.34 -17.45 9.83 22.87 0.22 -17.22 16 11 C -0.03 -1.37 10.15 22.39 0.23 -1.14 16 12 C -0.37 -15.90 9.34 22.73 0.21 -15.69 16 13 C 0.40 18.70 7.65 133.40 1.02 19.72 16 14 N -0.73 -27.07 5.72 -344.99 -1.97 -29.04 16 15 C 0.14 3.54 5.03 86.38 0.43 3.97 16 16 C 0.11 2.32 6.34 86.38 0.55 2.87 16 17 N -1.10 -19.28 6.00 -187.49 -1.12 -20.41 16 18 S 2.72 56.87 5.74 -56.49 -0.32 56.54 16 19 O -0.99 -26.99 16.75 -128.00 -2.14 -29.14 16 20 O -0.98 -24.37 17.28 -128.00 -2.21 -26.59 16 21 C -0.69 -12.80 5.95 22.27 0.13 -12.67 16 22 C -0.03 -0.56 9.52 22.27 0.21 -0.35 16 23 C -0.15 -1.82 10.05 22.27 0.22 -1.60 16 24 C -0.06 -0.75 10.05 22.27 0.22 -0.53 16 25 C -0.15 -2.11 10.05 22.27 0.22 -1.89 16 26 C -0.04 -0.72 9.52 22.27 0.21 -0.51 16 27 N -0.57 -31.32 7.91 -186.58 -1.48 -32.80 16 28 H 0.28 13.23 8.29 -92.71 -0.77 12.46 16 29 H 0.10 4.80 8.06 -2.91 -0.02 4.78 16 30 H 0.13 4.67 8.06 -2.91 -0.02 4.65 16 31 H 0.12 4.42 6.68 -2.91 -0.02 4.40 16 32 H 0.40 14.59 8.59 -92.71 -0.80 13.79 16 33 H 0.06 1.67 7.92 -2.39 -0.02 1.65 16 34 H 0.07 1.73 7.92 -2.39 -0.02 1.71 16 35 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 36 H 0.08 1.82 7.75 -2.39 -0.02 1.80 16 37 H 0.43 5.81 8.65 -96.74 -0.84 4.98 16 38 H 0.15 2.00 7.62 -2.91 -0.02 1.98 16 39 H 0.16 1.07 8.06 -2.91 -0.02 1.05 16 40 H 0.16 0.89 8.06 -2.91 -0.02 0.87 16 41 H 0.15 1.49 8.06 -2.91 -0.02 1.47 16 42 H 0.14 2.42 7.62 -2.91 -0.02 2.40 16 Total: -1.00 -75.79 373.73 -2.70 -78.48 By element: Atomic # 1 Polarization: 36.96 SS G_CDS: -0.56 Total: 36.40 kcal Atomic # 6 Polarization: -38.96 SS G_CDS: 4.84 Total: -34.12 kcal Atomic # 7 Polarization: -117.58 SS G_CDS: -4.32 Total: -121.91 kcal Atomic # 8 Polarization: -51.37 SS G_CDS: -4.36 Total: -55.72 kcal Atomic # 14 Polarization: 38.29 SS G_CDS: 2.03 Total: 40.32 kcal Atomic # 16 Polarization: 56.87 SS G_CDS: -0.32 Total: 56.54 kcal Total: -75.79 -2.70 -78.48 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320364187.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.954 kcal (2) G-P(sol) polarization free energy of solvation -75.785 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.832 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.699 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.484 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.531 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds