Wall clock time and date at job start Wed Apr 1 2020 04:53:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86801 * 119.99833 * 2 1 4 4 H 1.48496 * 109.47031 * 239.99727 * 3 2 1 5 5 H 1.48497 * 109.47267 * 359.97438 * 3 2 1 6 6 H 1.48504 * 109.47169 * 120.00009 * 3 2 1 7 7 C 1.38811 * 120.00467 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00530 * 180.02562 * 7 2 1 9 9 N 1.36943 * 119.99622 * 359.72375 * 7 2 1 10 10 C 1.46504 * 119.99781 * 180.27904 * 9 7 2 11 11 C 1.52996 * 109.46681 * 180.02562 * 10 9 7 12 12 H 1.09000 * 112.85369 * 43.80192 * 11 10 9 13 13 C 1.53781 * 113.61168 * 175.00037 * 11 10 9 14 14 C 1.53776 * 87.08476 * 139.98028 * 13 11 10 15 15 H 1.08997 * 113.61630 * 220.02001 * 14 13 11 16 16 N 1.46499 * 113.61751 * 89.19689 * 14 13 11 17 17 C 1.34775 * 119.99937 * 155.00350 * 16 14 13 18 18 O 1.21491 * 120.00095 * 359.97438 * 17 16 14 19 19 C 1.48347 * 119.99951 * 180.02562 * 17 16 14 20 20 C 1.41701 * 126.81341 * 179.97438 * 19 17 16 21 21 C 1.37159 * 103.80013 * 179.97438 * 20 19 17 22 22 C 1.47026 * 126.85970 * 179.97438 * 21 20 19 23 23 C 1.36197 * 125.33283 * 180.02562 * 22 21 20 24 24 C 1.37724 * 114.44121 * 179.97438 * 23 22 21 25 25 C 1.33733 * 115.18968 * 0.02562 * 24 23 22 26 26 S 1.75826 * 109.96630 * 359.75091 * 25 24 23 27 27 O 1.34568 * 106.28134 * 0.02562 * 21 20 19 28 28 N 1.20876 * 111.69376 * 359.69979 * 27 21 20 29 29 C 1.53780 * 113.61360 * 272.49185 * 11 10 9 30 30 H 0.96995 * 120.00147 * 0.02562 * 1 2 3 31 31 H 0.97000 * 119.99808 * 0.27579 * 9 7 2 32 32 H 1.09006 * 109.46810 * 299.99903 * 10 9 7 33 33 H 1.08997 * 109.47198 * 60.00005 * 10 9 7 34 34 H 1.09010 * 113.61282 * 254.52694 * 13 11 10 35 35 H 1.08998 * 113.61859 * 25.34514 * 13 11 10 36 36 H 0.96996 * 120.00286 * 335.00423 * 16 14 13 37 37 H 1.08003 * 128.10341 * 0.02657 * 20 19 17 38 38 H 1.07991 * 122.78271 * 359.96694 * 23 22 21 39 39 H 1.07996 * 122.40187 * 180.02562 * 24 23 22 40 40 H 1.08003 * 125.01510 * 180.02562 * 25 24 23 41 41 H 1.08998 * 113.61460 * 334.57251 * 29 11 10 42 42 H 1.09004 * 113.61521 * 105.47479 * 29 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1039 1.6964 -1.2124 5 1 1.2851 2.7465 -0.0006 6 1 3.1039 1.6965 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3256 -2.3880 0.0068 10 6 2.0582 -3.6567 0.0135 11 6 1.0640 -4.8196 0.0190 12 1 0.2382 -4.6738 -0.6773 13 6 1.7307 -6.2006 -0.0965 14 6 0.7047 -6.6952 0.9367 15 1 1.1230 -7.3808 1.6736 16 7 -0.5377 -7.1909 0.3393 17 6 -1.2942 -8.0869 1.0035 18 8 -0.9456 -8.4840 2.0975 19 6 -2.5519 -8.5893 0.3983 20 6 -3.4516 -9.5263 0.9645 21 6 -4.4373 -9.6464 0.0183 22 6 -5.6323 -10.4997 0.0931 23 6 -6.5932 -10.5953 -0.8674 24 6 -7.6170 -11.4654 -0.5646 25 6 -7.5113 -12.0787 0.6191 26 16 -6.0414 -11.5622 1.4339 27 8 -4.0917 -8.8281 -0.9925 28 7 -3.0548 -8.2500 -0.7648 29 6 0.6165 -5.2409 1.4287 30 1 -0.4850 0.8400 -0.0004 31 1 0.3556 -2.3880 0.0068 32 1 2.6849 -3.7191 -0.8762 33 1 2.6848 -3.7097 0.9038 34 1 1.6171 -6.6595 -1.0788 35 1 2.7593 -6.2204 0.2635 36 1 -0.8158 -6.8742 -0.5343 37 1 -3.3787 -10.0279 1.9182 38 1 -6.5556 -10.0352 -1.7899 39 1 -8.4455 -11.6398 -1.2349 40 1 -8.2217 -12.7899 1.0142 41 1 1.3400 -4.9986 2.2070 42 1 -0.3965 -4.9249 1.6779 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001330633081.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:53:35 Heat of formation + Delta-G solvation = 97.440564 kcal Electronic energy + Delta-G solvation = -25918.041000 eV Core-core repulsion = 21994.506242 eV Total energy + Delta-G solvation = -3923.534758 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.109 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -45.40458 -40.27276 -38.39996 -38.27847 -34.60460 -34.45862 -33.55375 -32.81638 -30.82161 -29.17121 -27.07821 -25.55178 -25.50501 -24.77864 -23.39678 -23.05725 -21.50795 -21.20949 -19.75551 -19.12640 -18.91502 -18.18753 -17.26689 -16.98524 -16.85932 -16.02236 -15.84196 -15.09876 -14.94990 -14.70873 -14.37151 -14.05131 -13.92954 -13.75449 -13.71781 -13.34376 -13.19389 -12.89071 -12.79219 -12.39745 -12.16576 -11.94871 -11.70190 -11.42370 -11.03528 -10.88058 -10.80732 -10.79869 -10.61720 -10.38106 -10.34764 -10.11057 -9.84097 -9.60456 -9.13955 -9.10324 -8.82490 -8.81211 -6.87978 -5.73280 -3.01666 -0.19935 0.75252 0.87247 1.32010 1.41815 2.28259 2.55834 2.69044 2.90230 3.46040 3.50038 3.51373 3.57311 3.94382 4.42291 4.49245 4.59483 4.62688 4.72416 4.77632 4.79879 4.92838 5.00043 5.08890 5.11747 5.34954 5.44398 5.60416 5.65587 5.66026 5.79629 5.84240 5.91875 5.97657 6.10394 6.20030 6.27045 6.41677 6.57219 6.79752 6.93864 7.19135 7.57983 7.72000 7.87536 8.45811 9.56606 10.15921 10.50300 11.49611 Molecular weight = 347.11amu Principal moments of inertia in cm(-1) A = 0.019077 B = 0.001700 C = 0.001615 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1467.386250 B =16467.453201 C =17337.625544 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.015 4.015 3 Si 0.908 3.092 4 H -0.286 1.286 5 H -0.291 1.291 6 H -0.286 1.286 7 C -0.240 4.240 8 H 0.069 0.931 9 N -0.732 5.732 10 C 0.163 3.837 11 C -0.114 4.114 12 H 0.088 0.912 13 C -0.137 4.137 14 C 0.113 3.887 15 H 0.104 0.896 16 N -0.690 5.690 17 C 0.602 3.398 18 O -0.521 6.521 19 C -0.016 4.016 20 C -0.167 4.167 21 C 0.041 3.959 22 C -0.145 4.145 23 C -0.097 4.097 24 C -0.136 4.136 25 C -0.206 4.206 26 S 0.176 5.824 27 O 0.138 5.862 28 N -0.324 5.324 29 C -0.138 4.138 30 H 0.255 0.745 31 H 0.383 0.617 32 H 0.019 0.981 33 H 0.021 0.979 34 H 0.070 0.930 35 H 0.098 0.902 36 H 0.409 0.591 37 H 0.184 0.816 38 H 0.152 0.848 39 H 0.149 0.851 40 H 0.172 0.828 41 H 0.094 0.906 42 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.871 -29.751 -0.148 33.261 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.211 4.211 3 Si 0.739 3.261 4 H -0.213 1.213 5 H -0.217 1.217 6 H -0.213 1.213 7 C -0.371 4.371 8 H 0.087 0.913 9 N -0.376 5.376 10 C 0.035 3.965 11 C -0.133 4.133 12 H 0.106 0.894 13 C -0.175 4.175 14 C 0.009 3.991 15 H 0.122 0.878 16 N -0.341 5.341 17 C 0.385 3.615 18 O -0.395 6.395 19 C -0.174 4.174 20 C -0.191 4.191 21 C -0.023 4.023 22 C -0.263 4.263 23 C -0.129 4.129 24 C -0.166 4.166 25 C -0.343 4.343 26 S 0.441 5.559 27 O 0.060 5.940 28 N -0.022 5.022 29 C -0.176 4.176 30 H 0.065 0.935 31 H 0.217 0.783 32 H 0.036 0.964 33 H 0.038 0.962 34 H 0.089 0.911 35 H 0.116 0.884 36 H 0.244 0.756 37 H 0.201 0.799 38 H 0.170 0.830 39 H 0.166 0.834 40 H 0.190 0.810 41 H 0.112 0.888 42 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -13.308 -29.396 1.130 32.288 hybrid contribution -0.858 1.100 -1.169 1.820 sum -14.166 -28.296 -0.038 31.644 Atomic orbital electron populations 1.69649 1.05114 1.25708 1.57818 1.24743 0.95524 0.97692 1.03126 0.86260 0.78501 0.83558 0.77826 1.21294 1.21713 1.21291 1.19207 0.91003 0.84285 1.42622 0.91271 1.42344 1.05836 0.99980 1.89418 1.20634 0.92961 0.85180 0.97713 1.22779 0.99195 0.94296 0.97029 0.89369 1.23319 0.98823 0.96583 0.98814 1.22059 0.83845 0.96302 0.96927 0.87844 1.45545 1.23438 1.42875 1.22253 1.16785 0.81103 0.79133 0.84497 1.90806 1.70781 1.58525 1.19372 1.23300 0.99792 1.01076 0.93190 1.22607 0.92927 1.01436 1.02107 1.21251 0.95835 0.96222 0.89039 1.21793 0.97499 1.05329 1.01678 1.20779 0.92820 0.99482 0.99839 1.20062 1.00643 0.98418 0.97473 1.26002 1.01943 1.06781 0.99577 1.84369 1.17336 1.36245 1.17931 1.84932 1.29618 1.41560 1.37922 1.74197 0.96578 1.14453 1.17014 1.23425 1.02693 0.93616 0.97888 0.93508 0.78331 0.96363 0.96152 0.91131 0.88380 0.75576 0.79882 0.83049 0.83369 0.81039 0.88761 0.91212 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.81 13.06 55.49 0.72 -28.09 16 2 C -0.02 -0.44 5.50 -17.43 -0.10 -0.54 16 3 Si 0.91 22.79 29.55 -169.99 -5.02 17.77 16 4 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 5 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 6 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 7 C -0.24 -6.87 9.99 -15.06 -0.15 -7.02 16 8 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 9 N -0.73 -18.92 5.60 -59.91 -0.34 -19.25 16 10 C 0.16 3.28 6.10 -4.04 -0.02 3.26 16 11 C -0.11 -1.82 3.63 -89.81 -0.33 -2.14 16 12 H 0.09 1.46 8.14 -51.93 -0.42 1.04 16 13 C -0.14 -1.69 7.39 -25.92 -0.19 -1.89 16 14 C 0.11 1.48 4.32 -67.12 -0.29 1.19 16 15 H 0.10 1.36 7.46 -51.93 -0.39 0.98 16 16 N -0.69 -8.89 5.26 -53.80 -0.28 -9.17 16 17 C 0.60 8.39 7.85 -12.10 -0.09 8.30 16 18 O -0.52 -8.48 16.54 5.37 0.09 -8.39 16 19 C -0.02 -0.19 7.17 -82.66 -0.59 -0.79 16 20 C -0.17 -1.73 10.77 -38.65 -0.42 -2.15 16 21 C 0.04 0.39 7.28 -36.41 -0.26 0.12 16 22 C -0.14 -1.09 6.45 -36.76 -0.24 -1.33 16 23 C -0.10 -0.59 10.17 -40.50 -0.41 -1.00 16 24 C -0.14 -0.63 10.15 -41.35 -0.42 -1.05 16 25 C -0.21 -0.89 11.21 29.15 0.33 -0.56 16 26 S 0.18 1.01 23.11 -107.50 -2.48 -1.47 16 27 O 0.14 1.47 11.21 15.76 0.18 1.64 16 28 N -0.32 -3.92 11.81 33.36 0.39 -3.53 16 29 C -0.14 -2.09 7.43 -25.92 -0.19 -2.29 16 30 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 31 H 0.38 10.45 7.67 -40.82 -0.31 10.13 16 32 H 0.02 0.38 8.14 -51.93 -0.42 -0.05 16 33 H 0.02 0.42 7.84 -51.93 -0.41 0.01 16 34 H 0.07 0.80 8.14 -51.92 -0.42 0.37 16 35 H 0.10 1.12 8.10 -51.93 -0.42 0.70 16 36 H 0.41 4.88 8.46 -40.82 -0.35 4.53 16 37 H 0.18 1.61 8.06 -52.48 -0.42 1.18 16 38 H 0.15 0.74 8.06 -52.49 -0.42 0.32 16 39 H 0.15 0.37 8.06 -52.49 -0.42 -0.05 16 40 H 0.17 0.32 8.06 -52.48 -0.42 -0.10 16 41 H 0.09 1.43 7.90 -51.93 -0.41 1.02 16 42 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 LS Contribution 381.25 15.07 5.75 5.75 Total: -1.00 -33.72 381.25 -9.59 -43.31 By element: Atomic # 1 Polarization: 14.55 SS G_CDS: -5.21 Total: 9.33 kcal Atomic # 6 Polarization: -4.51 SS G_CDS: -3.38 Total: -7.89 kcal Atomic # 7 Polarization: -60.54 SS G_CDS: 0.50 Total: -60.04 kcal Atomic # 8 Polarization: -7.02 SS G_CDS: 0.27 Total: -6.75 kcal Atomic # 14 Polarization: 22.79 SS G_CDS: -5.02 Total: 17.77 kcal Atomic # 16 Polarization: 1.01 SS G_CDS: -2.48 Total: -1.47 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -33.72 -9.59 -43.31 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001330633081.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.754 kcal (2) G-P(sol) polarization free energy of solvation -33.721 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 107.033 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.592 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.313 kcal (6) G-S(sol) free energy of system = (1) + (5) 97.441 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds