Wall clock time and date at job start Wed Apr 1 2020 04:53:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86801 * 119.99833 * 2 1 4 4 H 1.48496 * 109.47031 * 239.99727 * 3 2 1 5 5 H 1.48497 * 109.47267 * 359.97438 * 3 2 1 6 6 H 1.48504 * 109.47169 * 120.00009 * 3 2 1 7 7 C 1.38811 * 120.00467 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00530 * 180.02562 * 7 2 1 9 9 N 1.36943 * 119.99622 * 359.72375 * 7 2 1 10 10 C 1.46504 * 119.99781 * 180.27904 * 9 7 2 11 11 C 1.52996 * 109.46681 * 180.02562 * 10 9 7 12 12 H 1.09000 * 112.85369 * 43.80192 * 11 10 9 13 13 C 1.53781 * 113.61168 * 175.00037 * 11 10 9 14 14 C 1.53776 * 87.08476 * 139.98028 * 13 11 10 15 15 H 1.08997 * 113.61630 * 220.02001 * 14 13 11 16 16 N 1.46499 * 113.61751 * 89.19689 * 14 13 11 17 17 C 1.34775 * 119.99937 * 155.00350 * 16 14 13 18 18 O 1.21491 * 120.00095 * 359.97438 * 17 16 14 19 19 C 1.48347 * 119.99951 * 180.02562 * 17 16 14 20 20 C 1.41701 * 126.81341 * 179.97438 * 19 17 16 21 21 C 1.37159 * 103.80013 * 179.97438 * 20 19 17 22 22 C 1.47026 * 126.85970 * 179.97438 * 21 20 19 23 23 C 1.36197 * 125.33283 * 180.02562 * 22 21 20 24 24 C 1.37724 * 114.44121 * 179.97438 * 23 22 21 25 25 C 1.33733 * 115.18968 * 0.02562 * 24 23 22 26 26 S 1.75826 * 109.96630 * 359.75091 * 25 24 23 27 27 O 1.34568 * 106.28134 * 0.02562 * 21 20 19 28 28 N 1.20876 * 111.69376 * 359.69979 * 27 21 20 29 29 C 1.53780 * 113.61360 * 272.49185 * 11 10 9 30 30 H 0.96995 * 120.00147 * 0.02562 * 1 2 3 31 31 H 0.97000 * 119.99808 * 0.27579 * 9 7 2 32 32 H 1.09006 * 109.46810 * 299.99903 * 10 9 7 33 33 H 1.08997 * 109.47198 * 60.00005 * 10 9 7 34 34 H 1.09010 * 113.61282 * 254.52694 * 13 11 10 35 35 H 1.08998 * 113.61859 * 25.34514 * 13 11 10 36 36 H 0.96996 * 120.00286 * 335.00423 * 16 14 13 37 37 H 1.08003 * 128.10341 * 0.02657 * 20 19 17 38 38 H 1.07991 * 122.78271 * 359.96694 * 23 22 21 39 39 H 1.07996 * 122.40187 * 180.02562 * 24 23 22 40 40 H 1.08003 * 125.01510 * 180.02562 * 25 24 23 41 41 H 1.08998 * 113.61460 * 334.57251 * 29 11 10 42 42 H 1.09004 * 113.61521 * 105.47479 * 29 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1039 1.6964 -1.2124 5 1 1.2851 2.7465 -0.0006 6 1 3.1039 1.6965 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3256 -2.3880 0.0068 10 6 2.0582 -3.6567 0.0135 11 6 1.0640 -4.8196 0.0190 12 1 0.2382 -4.6738 -0.6773 13 6 1.7307 -6.2006 -0.0965 14 6 0.7047 -6.6952 0.9367 15 1 1.1230 -7.3808 1.6736 16 7 -0.5377 -7.1909 0.3393 17 6 -1.2942 -8.0869 1.0035 18 8 -0.9456 -8.4840 2.0975 19 6 -2.5519 -8.5893 0.3983 20 6 -3.4516 -9.5263 0.9645 21 6 -4.4373 -9.6464 0.0183 22 6 -5.6323 -10.4997 0.0931 23 6 -6.5932 -10.5953 -0.8674 24 6 -7.6170 -11.4654 -0.5646 25 6 -7.5113 -12.0787 0.6191 26 16 -6.0414 -11.5622 1.4339 27 8 -4.0917 -8.8281 -0.9925 28 7 -3.0548 -8.2500 -0.7648 29 6 0.6165 -5.2409 1.4287 30 1 -0.4850 0.8400 -0.0004 31 1 0.3556 -2.3880 0.0068 32 1 2.6849 -3.7191 -0.8762 33 1 2.6848 -3.7097 0.9038 34 1 1.6171 -6.6595 -1.0788 35 1 2.7593 -6.2204 0.2635 36 1 -0.8158 -6.8742 -0.5343 37 1 -3.3787 -10.0279 1.9182 38 1 -6.5556 -10.0352 -1.7899 39 1 -8.4455 -11.6398 -1.2349 40 1 -8.2217 -12.7899 1.0142 41 1 1.3400 -4.9986 2.2070 42 1 -0.3965 -4.9249 1.6779 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001330633081.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:53:34 Heat of formation + Delta-G solvation = 75.889232 kcal Electronic energy + Delta-G solvation = -25918.975536 eV Core-core repulsion = 21994.506242 eV Total energy + Delta-G solvation = -3924.469294 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.109 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -46.25587 -41.41176 -39.60429 -38.70551 -36.39099 -35.38150 -34.66512 -33.80625 -32.75448 -29.72055 -28.69996 -26.69086 -26.55716 -25.50961 -24.93931 -24.03790 -22.96950 -22.04206 -20.55490 -20.34515 -19.42004 -19.08934 -19.04879 -18.16267 -17.52255 -17.13791 -16.71224 -16.38211 -16.23987 -15.97227 -15.66238 -15.30835 -15.11423 -14.94909 -14.51540 -14.43547 -14.20782 -13.78891 -13.59265 -13.45185 -13.40145 -13.15407 -12.95007 -12.71062 -12.69579 -12.24475 -11.95031 -11.88115 -11.82716 -11.77567 -11.54611 -11.45725 -11.42072 -11.19677 -10.87624 -10.26292 -9.52419 -9.36300 -8.99306 -7.95781 -5.24570 -0.75941 -0.03557 0.27978 0.79320 0.93046 1.45867 1.49471 1.55568 1.63658 1.80307 1.88249 1.90440 2.55451 2.66113 3.20433 3.36734 3.50279 3.54269 3.64812 3.86200 3.89050 3.92786 4.00707 4.21287 4.30182 4.46631 4.49687 4.59606 4.63599 4.69977 4.78327 4.80911 4.87283 4.94286 5.05848 5.09189 5.19361 5.26155 5.27936 5.42088 5.46788 5.56814 6.14423 6.26512 6.70704 6.83571 7.32229 8.10228 8.32379 9.27712 Molecular weight = 347.11amu Principal moments of inertia in cm(-1) A = 0.019077 B = 0.001700 C = 0.001615 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1467.386250 B =16467.453201 C =17337.625544 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.971 5.971 2 C -0.079 4.079 3 Si 0.976 3.024 4 H -0.276 1.276 5 H -0.296 1.296 6 H -0.277 1.277 7 C -0.248 4.248 8 H 0.077 0.923 9 N -0.746 5.746 10 C 0.160 3.840 11 C -0.114 4.114 12 H 0.079 0.921 13 C -0.114 4.114 14 C 0.123 3.877 15 H 0.108 0.892 16 N -0.686 5.686 17 C 0.602 3.398 18 O -0.549 6.549 19 C -0.031 4.031 20 C -0.181 4.181 21 C 0.059 3.941 22 C -0.182 4.182 23 C -0.087 4.087 24 C -0.147 4.147 25 C -0.189 4.189 26 S 0.170 5.830 27 O 0.139 5.861 28 N -0.339 5.339 29 C -0.141 4.141 30 H 0.251 0.749 31 H 0.372 0.628 32 H 0.022 0.978 33 H 0.025 0.975 34 H 0.088 0.912 35 H 0.116 0.884 36 H 0.413 0.587 37 H 0.194 0.806 38 H 0.160 0.840 39 H 0.174 0.826 40 H 0.201 0.799 41 H 0.095 0.905 42 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.233 -31.431 -0.629 34.934 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.622 5.622 2 C -0.271 4.271 3 Si 0.804 3.196 4 H -0.202 1.202 5 H -0.222 1.222 6 H -0.203 1.203 7 C -0.380 4.380 8 H 0.095 0.905 9 N -0.388 5.388 10 C 0.034 3.966 11 C -0.133 4.133 12 H 0.097 0.903 13 C -0.153 4.153 14 C 0.018 3.982 15 H 0.126 0.874 16 N -0.336 5.336 17 C 0.386 3.614 18 O -0.425 6.425 19 C -0.188 4.188 20 C -0.204 4.204 21 C -0.006 4.006 22 C -0.300 4.300 23 C -0.120 4.120 24 C -0.176 4.176 25 C -0.325 4.325 26 S 0.436 5.564 27 O 0.061 5.939 28 N -0.038 5.038 29 C -0.179 4.179 30 H 0.059 0.941 31 H 0.203 0.797 32 H 0.040 0.960 33 H 0.043 0.957 34 H 0.107 0.893 35 H 0.134 0.866 36 H 0.250 0.750 37 H 0.211 0.789 38 H 0.178 0.822 39 H 0.191 0.809 40 H 0.218 0.782 41 H 0.113 0.887 42 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -13.626 -31.102 0.634 33.962 hybrid contribution -0.877 1.497 -1.036 2.020 sum -14.503 -29.605 -0.402 32.969 Atomic orbital electron populations 1.69819 1.06702 1.26121 1.59569 1.25611 0.96427 1.01272 1.03753 0.85176 0.77163 0.78957 0.78256 1.20231 1.22191 1.20346 1.19658 0.91581 0.85511 1.41214 0.90550 1.42589 1.05546 1.01339 1.89364 1.20827 0.93662 0.84357 0.97722 1.22698 0.98551 0.94659 0.97415 0.90273 1.23246 0.99163 0.93225 0.99634 1.21952 0.84111 0.94912 0.97231 0.87377 1.45546 1.23324 1.42457 1.22314 1.16976 0.81427 0.78849 0.84135 1.90779 1.71607 1.59600 1.20515 1.23209 0.99738 1.02085 0.93803 1.22735 0.93020 1.01763 1.02930 1.21528 0.95935 0.95169 0.87962 1.21881 0.97768 1.06945 1.03414 1.21095 0.92436 0.98888 0.99592 1.20336 1.00997 0.98128 0.98132 1.26441 1.01095 1.06038 0.98931 1.84414 1.18393 1.35925 1.17702 1.84890 1.29141 1.41622 1.38269 1.74176 0.97252 1.15223 1.17127 1.23435 1.01527 0.95398 0.97568 0.94059 0.79690 0.95977 0.95715 0.89299 0.86582 0.75009 0.78895 0.82222 0.80892 0.78242 0.88659 0.93211 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -61.04 13.06 21.65 0.28 -60.75 16 2 C -0.08 -4.63 5.50 84.86 0.47 -4.16 16 3 Si 0.98 47.03 29.55 68.60 2.03 49.06 16 4 H -0.28 -12.75 7.11 99.48 0.71 -12.05 16 5 H -0.30 -14.34 7.11 99.48 0.71 -13.63 16 6 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 7 C -0.25 -14.21 9.99 84.03 0.84 -13.37 16 8 H 0.08 4.17 7.83 -2.91 -0.02 4.15 16 9 N -0.75 -39.00 5.60 -343.44 -1.92 -40.92 16 10 C 0.16 6.40 6.10 86.38 0.53 6.92 16 11 C -0.11 -3.59 3.63 -10.27 -0.04 -3.63 16 12 H 0.08 2.64 8.14 -2.39 -0.02 2.62 16 13 C -0.11 -2.60 7.39 31.12 0.23 -2.37 16 14 C 0.12 3.10 4.32 45.52 0.20 3.30 16 15 H 0.11 2.73 7.46 -2.39 -0.02 2.71 16 16 N -0.69 -17.59 5.26 -442.44 -2.33 -19.92 16 17 C 0.60 17.04 7.85 86.94 0.68 17.72 16 18 O -0.55 -18.14 16.54 -3.69 -0.06 -18.20 16 19 C -0.03 -0.80 7.17 42.79 0.31 -0.49 16 20 C -0.18 -3.82 10.77 22.87 0.25 -3.58 16 21 C 0.06 1.10 7.28 24.32 0.18 1.28 16 22 C -0.18 -2.59 6.45 24.10 0.16 -2.43 16 23 C -0.09 -0.92 10.17 21.67 0.22 -0.70 16 24 C -0.15 -0.97 10.15 21.12 0.21 -0.75 16 25 C -0.19 -1.10 11.21 66.80 0.75 -0.35 16 26 S 0.17 1.75 23.11 -56.49 -1.31 0.44 16 27 O 0.14 2.97 11.21 66.58 0.75 3.72 16 28 N -0.34 -8.34 11.81 -48.87 -0.58 -8.92 16 29 C -0.14 -4.29 7.43 31.12 0.23 -4.06 16 30 H 0.25 15.28 8.31 -92.71 -0.77 14.51 16 31 H 0.37 20.82 7.67 -92.71 -0.71 20.11 16 32 H 0.02 0.88 8.14 -2.38 -0.02 0.86 16 33 H 0.02 0.98 7.84 -2.39 -0.02 0.96 16 34 H 0.09 1.76 8.14 -2.38 -0.02 1.74 16 35 H 0.12 2.30 8.10 -2.39 -0.02 2.28 16 36 H 0.41 9.83 8.46 -92.71 -0.78 9.05 16 37 H 0.19 3.49 8.06 -2.91 -0.02 3.46 16 38 H 0.16 1.32 8.06 -2.92 -0.02 1.30 16 39 H 0.17 0.26 8.06 -2.91 -0.02 0.24 16 40 H 0.20 -0.02 8.06 -2.91 -0.02 -0.04 16 41 H 0.09 2.87 7.90 -2.39 -0.02 2.85 16 42 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 Total: -1.00 -73.15 381.25 1.65 -71.50 By element: Atomic # 1 Polarization: 31.08 SS G_CDS: -0.41 Total: 30.66 kcal Atomic # 6 Polarization: -11.87 SS G_CDS: 5.21 Total: -6.67 kcal Atomic # 7 Polarization: -125.97 SS G_CDS: -4.55 Total: -130.51 kcal Atomic # 8 Polarization: -15.17 SS G_CDS: 0.69 Total: -14.48 kcal Atomic # 14 Polarization: 47.03 SS G_CDS: 2.03 Total: 49.06 kcal Atomic # 16 Polarization: 1.75 SS G_CDS: -1.31 Total: 0.44 kcal Total: -73.15 1.65 -71.50 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001330633081.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 147.391 kcal (2) G-P(sol) polarization free energy of solvation -73.153 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.239 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.650 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.502 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.889 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds