Wall clock time and date at job start Wed Apr 1 2020 04:12:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86802 * 120.00042 * 2 1 4 4 H 1.48498 * 109.47124 * 270.00452 * 3 2 1 5 5 H 1.48499 * 109.47063 * 29.99914 * 3 2 1 6 6 H 1.48495 * 109.47060 * 150.00165 * 3 2 1 7 7 C 1.37879 * 120.00427 * 180.02562 * 2 1 3 8 8 H 1.08008 * 119.99528 * 359.97438 * 7 2 1 9 9 C 1.50697 * 120.00345 * 180.02562 * 7 2 1 10 10 N 1.46503 * 109.46903 * 179.97438 * 9 7 2 11 11 C 1.34776 * 119.99589 * 269.71999 * 10 9 7 12 12 O 1.21291 * 119.99663 * 184.74446 * 11 10 9 13 13 C 1.50696 * 120.00037 * 4.73617 * 11 10 9 14 14 C 1.50701 * 109.47028 * 180.02562 * 13 11 10 15 15 C 1.39014 * 120.85213 * 269.72492 * 14 13 11 16 16 O 1.35538 * 120.47208 * 359.97438 * 15 14 13 17 17 N 1.32962 * 119.05172 * 179.76672 * 15 14 13 18 18 C 1.31763 * 120.86140 * 0.51870 * 17 15 14 19 19 N 1.31752 * 121.87185 * 359.73097 * 18 17 15 20 20 C 1.32969 * 120.86670 * 359.97438 * 19 18 17 21 21 O 1.35535 * 120.47816 * 179.97438 * 20 19 18 22 22 C 1.40031 * 120.00096 * 89.99777 * 10 9 7 23 23 C 1.38852 * 120.04542 * 67.60652 * 22 10 9 24 24 C 1.38112 * 119.95284 * 179.71873 * 23 22 10 25 25 C 1.38476 * 120.04541 * 0.55399 * 24 23 22 26 26 F 1.35102 * 119.95376 * 179.69768 * 25 24 23 27 27 C 1.38474 * 120.08895 * 359.72333 * 25 24 23 28 28 C 1.38115 * 120.04605 * 359.97438 * 27 25 24 29 29 H 0.96995 * 119.99845 * 359.97438 * 1 2 3 30 30 H 1.08995 * 109.47600 * 59.99469 * 9 7 2 31 31 H 1.09007 * 109.46900 * 299.99167 * 9 7 2 32 32 H 1.08992 * 109.47749 * 300.00197 * 13 11 10 33 33 H 1.09001 * 109.47054 * 60.00809 * 13 11 10 34 34 H 0.96711 * 114.00206 * 90.00220 * 16 15 14 35 35 H 1.08003 * 119.05727 * 179.71163 * 18 17 15 36 36 H 0.96698 * 114.00089 * 270.02746 * 21 20 19 37 37 H 1.08004 * 120.01937 * 0.02562 * 23 22 10 38 38 H 1.08006 * 119.97666 * 180.25274 * 24 23 22 39 39 H 1.07996 * 119.97793 * 179.97438 * 27 25 24 40 40 H 1.07995 * 120.02021 * 179.97438 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1294 -0.0005 9 6 3.5116 -1.1940 0.0000 10 7 3.9999 -2.5752 -0.0001 11 6 4.2294 -3.2089 1.1671 12 8 4.7146 -4.3205 1.1684 13 6 3.8834 -2.5361 2.4704 14 6 4.2364 -3.4492 3.6162 15 6 3.3086 -4.3545 4.1183 16 8 2.0653 -4.4318 3.5842 17 7 3.6597 -5.1464 5.1270 18 6 4.8644 -5.0734 5.6559 19 7 5.7692 -4.2252 5.2112 20 6 5.4965 -3.4039 4.2016 21 8 6.4330 -2.5341 3.7508 22 6 4.2337 -3.2351 -1.2128 23 6 5.2655 -2.8184 -2.0434 24 6 5.4980 -3.4743 -3.2364 25 6 4.6959 -4.5395 -3.6098 26 9 4.9212 -5.1759 -4.7800 27 6 3.6628 -4.9530 -2.7856 28 6 3.4308 -4.3038 -1.5888 29 1 -0.4850 0.8400 0.0004 30 1 3.8746 -0.6807 0.8904 31 1 3.8753 -0.6796 -0.8896 32 1 4.4459 -1.6069 2.5603 33 1 2.8157 -2.3184 2.4947 34 1 1.9885 -5.0634 2.8559 35 1 5.1170 -5.7273 6.4775 36 1 6.4162 -1.6742 4.1926 37 1 5.8888 -1.9851 -1.7543 38 1 6.3030 -3.1531 -3.8808 39 1 3.0381 -5.7837 -3.0787 40 1 2.6248 -4.6263 -0.9465 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001362237506.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:12:02 Heat of formation + Delta-G solvation = -69.086102 kcal Electronic energy + Delta-G solvation = -30429.896681 eV Core-core repulsion = 25932.927609 eV Total energy + Delta-G solvation = -4496.969072 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 347.111 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -48.72194 -41.44683 -40.05799 -38.18341 -38.10210 -37.07455 -35.27180 -32.99871 -32.66403 -32.57499 -30.98538 -29.84341 -28.17656 -27.34535 -23.94439 -23.88331 -23.18744 -22.45597 -21.98662 -19.73245 -19.16808 -18.56454 -17.92098 -17.53072 -17.24301 -16.95145 -16.32714 -15.99215 -15.91408 -15.45950 -15.36033 -14.73880 -14.65153 -14.45762 -14.12099 -14.07652 -13.50002 -13.40196 -13.30258 -13.10344 -12.86358 -12.62924 -12.39215 -12.18921 -11.94632 -11.84712 -11.65428 -11.32767 -10.94469 -10.84771 -10.55969 -10.45960 -10.35430 -9.83168 -9.74490 -9.45125 -9.14923 -8.92558 -8.85510 -8.73075 -7.87320 -6.34694 -4.38419 0.72630 0.80461 1.30587 1.43582 2.95171 3.07054 3.12509 3.16702 3.22677 3.25682 3.42815 3.67477 3.78474 4.13607 4.21999 4.43366 4.63264 4.79452 4.92521 4.95480 4.99682 5.07251 5.12934 5.24280 5.42248 5.56662 5.68230 5.71645 5.93022 6.04516 6.11747 6.25927 6.29352 6.36093 6.39030 6.66148 6.76432 6.85418 7.22535 7.23751 7.29166 7.38088 7.74523 7.94198 8.19167 8.54849 8.69582 9.22464 10.77372 Molecular weight = 347.11amu Principal moments of inertia in cm(-1) A = 0.007569 B = 0.004747 C = 0.003465 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3698.544912 B = 5896.568415 C = 8079.429612 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.884 5.884 2 C 0.081 3.919 3 Si 0.869 3.131 4 H -0.272 1.272 5 H -0.281 1.281 6 H -0.264 1.264 7 C -0.546 4.546 8 H 0.081 0.919 9 C 0.208 3.792 10 N -0.553 5.553 11 C 0.533 3.467 12 O -0.552 6.552 13 C -0.086 4.086 14 C -0.191 4.191 15 C 0.388 3.612 16 O -0.467 6.467 17 N -0.545 5.545 18 C 0.334 3.666 19 N -0.547 5.547 20 C 0.382 3.618 21 O -0.469 6.469 22 C 0.164 3.836 23 C -0.098 4.098 24 C -0.145 4.145 25 C 0.083 3.917 26 F -0.145 7.145 27 C -0.143 4.143 28 C -0.074 4.074 29 H 0.268 0.732 30 H 0.040 0.960 31 H 0.034 0.966 32 H 0.107 0.893 33 H 0.133 0.867 34 H 0.413 0.587 35 H 0.205 0.795 36 H 0.406 0.594 37 H 0.132 0.868 38 H 0.134 0.866 39 H 0.135 0.865 40 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.291 -4.542 3.847 11.034 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.520 5.520 2 C -0.124 4.124 3 Si 0.695 3.305 4 H -0.198 1.198 5 H -0.207 1.207 6 H -0.188 1.188 7 C -0.584 4.584 8 H 0.099 0.901 9 C 0.089 3.911 10 N -0.280 5.280 11 C 0.322 3.678 12 O -0.430 6.430 13 C -0.126 4.126 14 C -0.198 4.198 15 C 0.201 3.799 16 O -0.276 6.276 17 N -0.271 5.271 18 C 0.046 3.954 19 N -0.273 5.273 20 C 0.196 3.804 21 O -0.276 6.276 22 C 0.073 3.927 23 C -0.117 4.117 24 C -0.164 4.164 25 C 0.064 3.936 26 F -0.124 7.124 27 C -0.162 4.162 28 C -0.094 4.094 29 H 0.079 0.921 30 H 0.057 0.943 31 H 0.052 0.948 32 H 0.125 0.875 33 H 0.151 0.849 34 H 0.273 0.727 35 H 0.221 0.779 36 H 0.266 0.734 37 H 0.150 0.850 38 H 0.152 0.848 39 H 0.153 0.847 40 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 9.573 -5.525 4.502 11.934 hybrid contribution -0.007 1.605 -1.075 1.932 sum 9.566 -3.920 3.427 10.891 Atomic orbital electron populations 1.69868 1.06192 1.27409 1.48556 1.24836 0.94721 0.98817 0.94027 0.86974 0.80365 0.84086 0.79086 1.19785 1.20698 1.18847 1.21251 0.88476 0.95242 1.53455 0.90098 1.20017 0.96483 0.76502 0.98133 1.45577 1.63869 1.16109 1.02477 1.20260 0.77055 0.85576 0.84882 1.90676 1.44481 1.20235 1.87627 1.20385 1.06636 0.97375 0.88225 1.21458 0.93340 1.03413 1.01630 1.19104 0.84318 0.87970 0.88469 1.84677 1.24007 1.65140 1.53728 1.68018 1.20977 1.25393 1.12681 1.24528 0.82618 0.92282 0.96018 1.67965 1.37237 1.08350 1.13717 1.19067 0.84686 0.89320 0.87352 1.84763 1.54384 1.26914 1.61532 1.17557 0.94017 0.93718 0.87435 1.21050 0.96485 1.00267 0.93920 1.20885 1.00999 0.96418 0.98097 1.17640 0.98134 0.94637 0.83227 1.91463 1.94309 1.81058 1.45591 1.20956 0.98327 1.02014 0.94924 1.21102 0.97938 0.95065 0.95265 0.92150 0.94252 0.94774 0.87543 0.84882 0.72663 0.77889 0.73436 0.84983 0.84769 0.84744 0.84991 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.18 13.96 55.43 0.77 -23.41 16 2 C 0.08 2.03 5.47 -17.82 -0.10 1.93 16 3 Si 0.87 18.37 27.47 -169.99 -4.67 13.70 16 4 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16 5 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 6 H -0.26 -5.09 6.54 56.52 0.37 -4.72 16 7 C -0.55 -13.08 9.74 -34.44 -0.34 -13.42 16 8 H 0.08 2.16 8.06 -52.48 -0.42 1.74 16 9 C 0.21 4.14 3.96 -5.19 -0.02 4.12 16 10 N -0.55 -10.31 2.51 -114.72 -0.29 -10.60 16 11 C 0.53 9.71 7.52 -10.99 -0.08 9.63 16 12 O -0.55 -11.20 15.79 5.55 0.09 -11.12 16 13 C -0.09 -1.35 4.14 -29.04 -0.12 -1.47 16 14 C -0.19 -2.90 4.43 -104.05 -0.46 -3.36 16 15 C 0.39 5.92 7.80 -16.77 -0.13 5.79 16 16 O -0.47 -6.84 12.74 -18.31 -0.23 -7.07 16 17 N -0.54 -7.86 10.46 -14.71 -0.15 -8.02 16 18 C 0.33 4.16 12.28 -92.22 -1.13 3.03 16 19 N -0.55 -7.63 10.46 -14.71 -0.15 -7.79 16 20 C 0.38 5.51 7.80 -16.77 -0.13 5.38 16 21 O -0.47 -5.88 12.74 -18.30 -0.23 -6.11 16 22 C 0.16 2.95 4.75 -83.66 -0.40 2.55 16 23 C -0.10 -1.54 9.68 -39.40 -0.38 -1.92 16 24 C -0.14 -2.06 10.02 -39.54 -0.40 -2.46 16 25 C 0.08 1.24 7.30 -39.41 -0.29 0.96 16 26 F -0.15 -2.13 17.27 2.25 0.04 -2.09 16 27 C -0.14 -2.16 10.02 -39.54 -0.40 -2.56 16 28 C -0.07 -1.27 9.55 -39.40 -0.38 -1.64 16 29 H 0.27 6.92 8.31 -40.82 -0.34 6.58 16 30 H 0.04 0.73 5.52 -51.93 -0.29 0.45 16 31 H 0.03 0.67 7.28 -51.92 -0.38 0.30 16 32 H 0.11 1.46 6.74 -51.93 -0.35 1.11 16 33 H 0.13 2.25 7.42 -51.93 -0.39 1.87 16 34 H 0.41 4.68 9.06 45.56 0.41 5.09 16 35 H 0.20 1.65 8.06 -52.48 -0.42 1.22 16 36 H 0.41 2.78 9.06 45.56 0.41 3.19 16 37 H 0.13 1.85 8.06 -52.48 -0.42 1.42 16 38 H 0.13 1.55 8.06 -52.48 -0.42 1.12 16 39 H 0.13 1.71 8.06 -52.49 -0.42 1.29 16 40 H 0.13 2.24 8.06 -52.49 -0.42 1.81 16 LS Contribution 360.34 15.07 5.43 5.43 Total: -1.00 -32.64 360.34 -6.43 -39.07 By element: Atomic # 1 Polarization: 13.73 SS G_CDS: -2.28 Total: 11.45 kcal Atomic # 6 Polarization: 11.31 SS G_CDS: -4.75 Total: 6.56 kcal Atomic # 7 Polarization: -49.99 SS G_CDS: 0.18 Total: -49.82 kcal Atomic # 8 Polarization: -23.92 SS G_CDS: -0.38 Total: -24.30 kcal Atomic # 9 Polarization: -2.13 SS G_CDS: 0.04 Total: -2.09 kcal Atomic # 14 Polarization: 18.37 SS G_CDS: -4.67 Total: 13.70 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -32.64 -6.43 -39.07 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001362237506.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.020 kcal (2) G-P(sol) polarization free energy of solvation -32.641 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.661 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.425 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.066 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.086 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds