Wall clock time and date at job start Wed Apr 1 2020 04:12:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86802 * 120.00042 * 2 1 4 4 H 1.48498 * 109.47124 * 270.00452 * 3 2 1 5 5 H 1.48499 * 109.47063 * 29.99914 * 3 2 1 6 6 H 1.48495 * 109.47060 * 150.00165 * 3 2 1 7 7 C 1.37879 * 120.00427 * 180.02562 * 2 1 3 8 8 H 1.08008 * 119.99528 * 359.97438 * 7 2 1 9 9 C 1.50697 * 120.00345 * 180.02562 * 7 2 1 10 10 N 1.46503 * 109.46903 * 179.97438 * 9 7 2 11 11 C 1.34776 * 119.99589 * 269.71999 * 10 9 7 12 12 O 1.21291 * 119.99663 * 184.74446 * 11 10 9 13 13 C 1.50696 * 120.00037 * 4.73617 * 11 10 9 14 14 C 1.50701 * 109.47028 * 180.02562 * 13 11 10 15 15 C 1.39014 * 120.85213 * 269.72492 * 14 13 11 16 16 O 1.35538 * 120.47208 * 359.97438 * 15 14 13 17 17 N 1.32962 * 119.05172 * 179.76672 * 15 14 13 18 18 C 1.31763 * 120.86140 * 0.51870 * 17 15 14 19 19 N 1.31752 * 121.87185 * 359.73097 * 18 17 15 20 20 C 1.32969 * 120.86670 * 359.97438 * 19 18 17 21 21 O 1.35535 * 120.47816 * 179.97438 * 20 19 18 22 22 C 1.40031 * 120.00096 * 89.99777 * 10 9 7 23 23 C 1.38852 * 120.04542 * 67.60652 * 22 10 9 24 24 C 1.38112 * 119.95284 * 179.71873 * 23 22 10 25 25 C 1.38476 * 120.04541 * 0.55399 * 24 23 22 26 26 F 1.35102 * 119.95376 * 179.69768 * 25 24 23 27 27 C 1.38474 * 120.08895 * 359.72333 * 25 24 23 28 28 C 1.38115 * 120.04605 * 359.97438 * 27 25 24 29 29 H 0.96995 * 119.99845 * 359.97438 * 1 2 3 30 30 H 1.08995 * 109.47600 * 59.99469 * 9 7 2 31 31 H 1.09007 * 109.46900 * 299.99167 * 9 7 2 32 32 H 1.08992 * 109.47749 * 300.00197 * 13 11 10 33 33 H 1.09001 * 109.47054 * 60.00809 * 13 11 10 34 34 H 0.96711 * 114.00206 * 90.00220 * 16 15 14 35 35 H 1.08003 * 119.05727 * 179.71163 * 18 17 15 36 36 H 0.96698 * 114.00089 * 270.02746 * 21 20 19 37 37 H 1.08004 * 120.01937 * 0.02562 * 23 22 10 38 38 H 1.08006 * 119.97666 * 180.25274 * 24 23 22 39 39 H 1.07996 * 119.97793 * 179.97438 * 27 25 24 40 40 H 1.07995 * 120.02021 * 179.97438 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1294 -0.0005 9 6 3.5116 -1.1940 0.0000 10 7 3.9999 -2.5752 -0.0001 11 6 4.2294 -3.2089 1.1671 12 8 4.7146 -4.3205 1.1684 13 6 3.8834 -2.5361 2.4704 14 6 4.2364 -3.4492 3.6162 15 6 3.3086 -4.3545 4.1183 16 8 2.0653 -4.4318 3.5842 17 7 3.6597 -5.1464 5.1270 18 6 4.8644 -5.0734 5.6559 19 7 5.7692 -4.2252 5.2112 20 6 5.4965 -3.4039 4.2016 21 8 6.4330 -2.5341 3.7508 22 6 4.2337 -3.2351 -1.2128 23 6 5.2655 -2.8184 -2.0434 24 6 5.4980 -3.4743 -3.2364 25 6 4.6959 -4.5395 -3.6098 26 9 4.9212 -5.1759 -4.7800 27 6 3.6628 -4.9530 -2.7856 28 6 3.4308 -4.3038 -1.5888 29 1 -0.4850 0.8400 0.0004 30 1 3.8746 -0.6807 0.8904 31 1 3.8753 -0.6796 -0.8896 32 1 4.4459 -1.6069 2.5603 33 1 2.8157 -2.3184 2.4947 34 1 1.9885 -5.0634 2.8559 35 1 5.1170 -5.7273 6.4775 36 1 6.4162 -1.6742 4.1926 37 1 5.8888 -1.9851 -1.7543 38 1 6.3030 -3.1531 -3.8808 39 1 3.0381 -5.7837 -3.0787 40 1 2.6248 -4.6263 -0.9465 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001362237506.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:12:00 Heat of formation + Delta-G solvation = -95.809292 kcal Electronic energy + Delta-G solvation = -30431.055486 eV Core-core repulsion = 25932.927609 eV Total energy + Delta-G solvation = -4498.127877 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 347.111 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -49.90196 -42.54433 -41.39863 -39.38356 -39.23435 -38.14491 -36.77459 -34.56238 -34.11704 -33.63849 -32.19355 -31.20779 -29.69045 -28.64616 -25.07966 -25.02815 -24.66136 -23.87491 -23.22995 -20.78143 -20.50659 -19.64241 -19.15926 -18.93564 -18.74913 -18.29606 -17.75832 -17.31818 -16.91888 -16.60798 -16.53916 -16.24792 -15.90934 -15.62864 -15.43782 -15.30234 -14.82300 -14.57173 -14.52036 -14.41241 -14.32907 -13.90457 -13.68658 -13.65585 -13.27290 -13.15936 -12.95322 -12.72708 -12.50147 -12.20015 -11.97723 -11.68795 -11.63533 -11.42218 -11.15098 -10.76554 -10.55801 -10.30580 -10.12953 -10.12075 -9.25633 -8.26631 -6.34707 -0.34110 -0.26894 0.05024 0.22496 1.43208 1.44325 1.52795 1.53905 2.01962 2.23118 2.30301 2.36866 2.53174 2.59228 3.07776 3.23170 3.24324 3.49312 3.66707 3.72916 3.79481 3.88262 4.11108 4.20298 4.21720 4.36746 4.37800 4.52349 4.74858 4.80731 4.82456 4.87821 5.06933 5.09816 5.10832 5.34820 5.44520 5.57994 5.69874 5.93882 6.15257 6.31151 6.43188 6.48724 6.70991 6.90420 7.12593 7.31117 8.88972 Molecular weight = 347.11amu Principal moments of inertia in cm(-1) A = 0.007569 B = 0.004747 C = 0.003465 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3698.544912 B = 5896.568415 C = 8079.429612 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.940 5.940 2 C 0.022 3.978 3 Si 0.933 3.067 4 H -0.270 1.270 5 H -0.288 1.288 6 H -0.225 1.225 7 C -0.538 4.538 8 H 0.035 0.965 9 C 0.215 3.785 10 N -0.554 5.554 11 C 0.531 3.469 12 O -0.575 6.575 13 C -0.076 4.076 14 C -0.209 4.209 15 C 0.377 3.623 16 O -0.480 6.480 17 N -0.560 5.560 18 C 0.339 3.661 19 N -0.556 5.556 20 C 0.387 3.613 21 O -0.475 6.475 22 C 0.131 3.869 23 C -0.100 4.100 24 C -0.134 4.134 25 C 0.079 3.921 26 F -0.142 7.142 27 C -0.143 4.143 28 C -0.096 4.096 29 H 0.267 0.733 30 H 0.063 0.937 31 H 0.046 0.954 32 H 0.130 0.870 33 H 0.116 0.884 34 H 0.422 0.578 35 H 0.246 0.754 36 H 0.430 0.570 37 H 0.153 0.847 38 H 0.168 0.832 39 H 0.153 0.847 40 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.221 -3.578 3.901 13.319 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.177 4.177 3 Si 0.755 3.245 4 H -0.196 1.196 5 H -0.214 1.214 6 H -0.148 1.148 7 C -0.576 4.576 8 H 0.054 0.946 9 C 0.094 3.906 10 N -0.280 5.280 11 C 0.322 3.678 12 O -0.455 6.455 13 C -0.116 4.116 14 C -0.216 4.216 15 C 0.191 3.809 16 O -0.290 6.290 17 N -0.286 5.286 18 C 0.052 3.948 19 N -0.282 5.282 20 C 0.201 3.799 21 O -0.286 6.286 22 C 0.040 3.960 23 C -0.120 4.120 24 C -0.153 4.153 25 C 0.060 3.940 26 F -0.120 7.120 27 C -0.162 4.162 28 C -0.115 4.115 29 H 0.076 0.924 30 H 0.081 0.919 31 H 0.065 0.935 32 H 0.148 0.852 33 H 0.134 0.866 34 H 0.284 0.716 35 H 0.262 0.738 36 H 0.294 0.706 37 H 0.170 0.830 38 H 0.186 0.814 39 H 0.171 0.829 40 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 12.533 -4.565 4.556 14.095 hybrid contribution -0.928 1.154 -1.131 1.863 sum 11.605 -3.411 3.425 12.571 Atomic orbital electron populations 1.70042 1.08436 1.28290 1.51129 1.25724 0.95355 1.02910 0.93719 0.85942 0.80451 0.78674 0.79409 1.19556 1.21440 1.14750 1.21401 0.90814 0.93403 1.51994 0.94620 1.19886 0.93471 0.77690 0.99516 1.45541 1.63684 1.15737 1.03085 1.20670 0.76367 0.85301 0.85480 1.90649 1.45695 1.21227 1.87968 1.20280 1.05716 0.98351 0.87291 1.21408 0.94080 1.04083 1.02056 1.19318 0.84377 0.88333 0.88889 1.84635 1.24374 1.65725 1.54260 1.68095 1.22013 1.25679 1.12847 1.25426 0.81635 0.91729 0.96006 1.68101 1.37515 1.08787 1.13832 1.19171 0.84429 0.89411 0.86936 1.84705 1.53614 1.28189 1.62120 1.17941 0.95505 0.94606 0.87923 1.21287 0.95967 1.00852 0.93877 1.21229 1.01098 0.95281 0.97727 1.17765 0.98109 0.94891 0.83225 1.91476 1.94242 1.81025 1.45287 1.21133 0.98692 1.02228 0.94181 1.21126 0.98236 0.95977 0.96198 0.92385 0.91901 0.93550 0.85236 0.86644 0.71601 0.73819 0.70619 0.82960 0.81448 0.82909 0.86401 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -53.28 13.96 21.45 0.30 -52.99 16 2 C 0.02 1.13 5.47 84.66 0.46 1.59 16 3 Si 0.93 36.74 27.47 68.60 1.88 38.62 16 4 H -0.27 -10.54 7.11 99.48 0.71 -9.83 16 5 H -0.29 -11.65 7.11 99.48 0.71 -10.94 16 6 H -0.23 -7.40 6.54 99.48 0.65 -6.75 16 7 C -0.54 -26.25 9.74 25.60 0.25 -26.00 16 8 H 0.04 2.02 8.06 -2.91 -0.02 2.00 16 9 C 0.21 8.23 3.96 85.63 0.34 8.57 16 10 N -0.55 -20.43 2.51 -635.24 -1.59 -22.03 16 11 C 0.53 19.33 7.52 87.66 0.66 19.99 16 12 O -0.58 -23.55 15.79 -3.06 -0.05 -23.59 16 13 C -0.08 -2.36 4.14 29.10 0.12 -2.24 16 14 C -0.21 -6.24 4.43 -19.49 -0.09 -6.33 16 15 C 0.38 11.59 7.80 84.71 0.66 12.25 16 16 O -0.48 -14.70 12.74 -88.42 -1.13 -15.82 16 17 N -0.56 -15.79 10.46 -313.02 -3.27 -19.07 16 18 C 0.34 7.85 12.28 180.91 2.22 10.07 16 19 N -0.56 -14.50 10.46 -313.02 -3.27 -17.77 16 20 C 0.39 10.60 7.80 84.71 0.66 11.26 16 21 O -0.48 -10.81 12.74 -88.39 -1.13 -11.94 16 22 C 0.13 4.67 4.75 38.12 0.18 4.85 16 23 C -0.10 -2.95 9.68 22.39 0.22 -2.73 16 24 C -0.13 -3.47 10.02 22.30 0.22 -3.25 16 25 C 0.08 2.24 7.30 22.38 0.16 2.41 16 26 F -0.14 -3.85 17.27 44.97 0.78 -3.07 16 27 C -0.14 -4.28 10.02 22.30 0.22 -4.06 16 28 C -0.10 -3.36 9.55 22.39 0.21 -3.14 16 29 H 0.27 14.28 8.31 -92.71 -0.77 13.51 16 30 H 0.06 2.14 5.52 -2.39 -0.01 2.13 16 31 H 0.05 1.70 7.28 -2.38 -0.02 1.68 16 32 H 0.13 3.30 6.74 -2.39 -0.02 3.28 16 33 H 0.12 4.01 7.42 -2.39 -0.02 4.00 16 34 H 0.42 10.42 9.06 -74.05 -0.67 9.75 16 35 H 0.25 3.23 8.06 -2.91 -0.02 3.21 16 36 H 0.43 4.66 9.06 -74.06 -0.67 3.99 16 37 H 0.15 3.77 8.06 -2.91 -0.02 3.75 16 38 H 0.17 3.17 8.06 -2.91 -0.02 3.14 16 39 H 0.15 3.83 8.06 -2.91 -0.02 3.80 16 40 H 0.12 4.31 8.06 -2.91 -0.02 4.29 16 Total: -1.00 -72.19 360.34 -1.23 -73.42 By element: Atomic # 1 Polarization: 31.25 SS G_CDS: -0.25 Total: 31.00 kcal Atomic # 6 Polarization: 16.73 SS G_CDS: 6.51 Total: 23.23 kcal Atomic # 7 Polarization: -104.01 SS G_CDS: -7.84 Total: -111.85 kcal Atomic # 8 Polarization: -49.05 SS G_CDS: -2.30 Total: -51.35 kcal Atomic # 9 Polarization: -3.85 SS G_CDS: 0.78 Total: -3.07 kcal Atomic # 14 Polarization: 36.74 SS G_CDS: 1.88 Total: 38.62 kcal Total: -72.19 -1.23 -73.42 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001362237506.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.393 kcal (2) G-P(sol) polarization free energy of solvation -72.191 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.584 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.225 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.416 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.809 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds