Wall clock time and date at job start Wed Apr 1 2020 04:04:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30823 * 1 3 3 Si 1.86805 * 119.99988 * 2 1 4 4 H 1.48503 * 109.46919 * 272.70040 * 3 2 1 5 5 H 1.48498 * 109.47295 * 32.70051 * 3 2 1 6 6 H 1.48504 * 109.47351 * 152.70285 * 3 2 1 7 7 C 1.39940 * 120.00266 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99490 * 346.77273 * 7 2 1 9 9 C 1.41437 * 119.99909 * 166.77545 * 7 2 1 10 10 C 1.40778 * 120.17800 * 329.07756 * 9 7 2 11 11 C 1.37716 * 120.04202 * 180.02562 * 10 9 7 12 12 C 1.38377 * 120.41013 * 359.67404 * 11 10 9 13 13 C 1.39887 * 120.35254 * 0.60833 * 12 11 10 14 14 C 1.47882 * 120.02104 * 179.68994 * 13 12 11 15 15 O 1.21545 * 119.99764 * 179.72274 * 14 13 12 16 16 N 1.34775 * 120.00214 * 359.73189 * 14 13 12 17 17 C 1.46500 * 120.00277 * 179.97438 * 16 14 13 18 18 H 1.09000 * 109.47213 * 329.00458 * 17 16 14 19 19 C 1.53000 * 109.47145 * 88.99869 * 17 16 14 20 20 O 1.42906 * 109.46753 * 65.00391 * 19 17 16 21 21 C 1.50697 * 109.47331 * 209.00330 * 17 16 14 22 22 C 1.38237 * 119.98629 * 332.54398 * 21 17 16 23 23 C 1.38186 * 120.04630 * 180.02562 * 22 21 17 24 24 C 1.38488 * 120.03070 * 359.97438 * 23 22 21 25 25 F 1.35103 * 120.01353 * 180.02562 * 24 23 22 26 26 C 1.38397 * 119.97339 * 0.02562 * 24 23 22 27 27 C 1.38436 * 119.95145 * 0.02562 * 26 24 23 28 28 F 1.35105 * 120.01602 * 179.97438 * 27 26 24 29 29 C 1.39026 * 119.95184 * 359.41809 * 13 12 11 30 30 H 0.97005 * 120.00146 * 0.02562 * 1 2 3 31 31 H 1.08004 * 119.98349 * 0.02562 * 10 9 7 32 32 H 1.07997 * 119.79302 * 180.02562 * 11 10 9 33 33 H 1.07992 * 119.82441 * 180.30119 * 12 11 10 34 34 H 0.97001 * 120.00150 * 359.97438 * 16 14 13 35 35 H 1.08999 * 109.47107 * 185.00261 * 19 17 16 36 36 H 1.08994 * 109.47708 * 305.00488 * 19 17 16 37 37 H 0.96703 * 113.99949 * 179.97438 * 20 19 17 38 38 H 1.08000 * 119.97226 * 0.02562 * 22 21 17 39 39 H 1.08002 * 119.97904 * 179.97438 * 23 22 21 40 40 H 1.08002 * 120.02646 * 179.72557 * 26 24 23 41 41 H 1.08000 * 120.20705 * 180.25309 * 29 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2423 1.6178 0.0000 4 1 2.4326 2.0794 -1.3986 5 1 1.4695 2.6356 0.7564 6 1 3.5673 1.4244 0.6421 7 6 2.0080 -1.2119 0.0005 8 1 1.4895 -2.1346 0.2150 9 6 3.3942 -1.2282 -0.2797 10 6 3.9519 -0.2711 -1.1485 11 6 5.3019 -0.2899 -1.4198 12 6 6.1202 -1.2419 -0.8377 13 6 5.5830 -2.2044 0.0236 14 6 6.4631 -3.2227 0.6363 15 8 5.9967 -4.0557 1.3885 16 7 7.7824 -3.2269 0.3608 17 6 8.6544 -4.2353 0.9683 18 1 8.2645 -4.5099 1.9484 19 6 8.7017 -5.4749 0.0727 20 8 9.3201 -5.1403 -1.1714 21 6 10.0438 -3.6720 1.1203 22 6 10.4879 -2.6864 0.2587 23 6 11.7619 -2.1694 0.3966 24 6 12.5953 -2.6378 1.3986 25 9 13.8407 -2.1318 1.5335 26 6 12.1518 -3.6246 2.2618 27 6 10.8756 -4.1426 2.1221 28 9 10.4416 -5.1063 2.9636 29 6 4.2220 -2.1996 0.3075 30 1 -0.4850 0.8401 -0.0004 31 1 3.3206 0.4784 -1.6026 32 1 5.7255 0.4465 -2.0866 33 1 7.1784 -1.2449 -1.0532 34 1 8.1546 -2.5622 -0.2397 35 1 9.2778 -6.2577 0.5659 36 1 7.6876 -5.8303 -0.1098 37 1 9.3845 -5.8805 -1.7903 38 1 9.8385 -2.3202 -0.5227 39 1 12.1079 -1.3997 -0.2774 40 1 12.8025 -3.9937 3.0407 41 1 3.8036 -2.9383 0.9750 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001362709144.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:04:41 Heat of formation + Delta-G solvation = -125.925825 kcal Electronic energy + Delta-G solvation = -29349.555895 eV Core-core repulsion = 24830.202106 eV Total energy + Delta-G solvation = -4519.353789 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 347.112 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -49.33337 -49.31352 -40.23379 -38.98233 -37.53877 -36.87204 -34.70211 -33.71776 -31.72234 -31.20392 -30.42430 -30.01539 -28.25249 -25.28621 -24.15875 -23.80122 -22.91182 -21.20974 -20.71576 -20.08311 -18.69312 -18.14073 -17.69728 -17.30370 -16.76050 -16.33858 -16.27182 -15.87493 -15.69704 -15.61638 -15.33314 -14.86351 -14.76200 -14.70848 -14.37185 -14.09508 -13.70379 -13.65043 -13.36703 -12.89268 -12.82020 -12.78466 -12.52204 -12.11345 -11.99558 -11.76811 -11.64852 -11.57276 -11.11950 -10.79106 -10.58967 -10.25219 -10.00150 -9.77093 -9.53653 -9.41775 -9.20822 -9.13104 -8.88217 -7.92372 -7.80532 -7.00859 -4.59706 0.57055 0.66471 1.82946 2.47029 2.97072 3.02554 3.15451 3.22697 3.26966 3.49807 3.51708 3.90051 3.98737 4.10767 4.17975 4.22453 4.45688 4.50622 4.81266 4.96874 5.12505 5.17631 5.27789 5.35033 5.44540 5.46982 5.54504 5.59671 5.70675 5.79781 5.88937 5.96125 6.30921 6.38313 6.51116 6.60443 6.63623 6.93291 7.15639 7.33574 7.40602 7.43148 7.67165 7.71383 7.92921 8.24799 8.47653 8.56903 8.68052 10.01427 Molecular weight = 347.11amu Principal moments of inertia in cm(-1) A = 0.016859 B = 0.002565 C = 0.002414 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1660.473128 B =10912.156582 C =11594.731323 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.808 5.808 2 C 0.081 3.919 3 Si 0.914 3.086 4 H -0.270 1.270 5 H -0.291 1.291 6 H -0.243 1.243 7 C -0.441 4.441 8 H 0.094 0.906 9 C 0.082 3.918 10 C -0.221 4.221 11 C -0.083 4.083 12 C -0.213 4.213 13 C -0.109 4.109 14 C 0.567 3.433 15 O -0.546 6.546 16 N -0.723 5.723 17 C 0.191 3.809 18 H 0.117 0.883 19 C 0.069 3.931 20 O -0.566 6.566 21 C -0.122 4.122 22 C -0.038 4.038 23 C -0.158 4.158 24 C 0.127 3.873 25 F -0.133 7.133 26 C -0.191 4.191 27 C 0.137 3.863 28 F -0.127 7.127 29 C -0.133 4.133 30 H 0.287 0.713 31 H 0.104 0.896 32 H 0.100 0.900 33 H 0.095 0.905 34 H 0.402 0.598 35 H 0.054 0.946 36 H 0.062 0.938 37 H 0.379 0.621 38 H 0.143 0.857 39 H 0.145 0.855 40 H 0.149 0.851 41 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.469 -5.158 -0.636 23.063 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.432 5.432 2 C -0.138 4.138 3 Si 0.741 3.259 4 H -0.196 1.196 5 H -0.218 1.218 6 H -0.166 1.166 7 C -0.469 4.469 8 H 0.112 0.888 9 C 0.079 3.921 10 C -0.240 4.240 11 C -0.101 4.101 12 C -0.233 4.233 13 C -0.112 4.112 14 C 0.358 3.642 15 O -0.424 6.424 16 N -0.377 5.377 17 C 0.085 3.915 18 H 0.134 0.866 19 C -0.010 4.010 20 O -0.371 6.371 21 C -0.124 4.124 22 C -0.056 4.056 23 C -0.177 4.177 24 C 0.107 3.893 25 F -0.111 7.111 26 C -0.210 4.210 27 C 0.117 3.883 28 F -0.105 7.105 29 C -0.154 4.154 30 H 0.097 0.903 31 H 0.122 0.878 32 H 0.118 0.882 33 H 0.113 0.887 34 H 0.241 0.759 35 H 0.072 0.928 36 H 0.080 0.920 37 H 0.226 0.774 38 H 0.161 0.839 39 H 0.163 0.837 40 H 0.167 0.833 41 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 21.895 -5.101 0.258 22.483 hybrid contribution 0.567 0.426 -0.412 0.820 sum 22.462 -4.675 -0.154 22.944 Atomic orbital electron populations 1.69651 1.08006 1.30367 1.35143 1.26171 0.94861 1.01701 0.91060 0.86290 0.81061 0.79620 0.78951 1.19594 1.21831 1.16635 1.19536 0.91288 0.95887 1.40187 0.88811 1.17715 0.93479 0.91045 0.89908 1.21208 0.95088 1.03939 1.03791 1.20507 0.93747 0.97352 0.98511 1.20375 0.97500 1.00085 1.05375 1.19366 0.94062 0.96662 1.01066 1.18834 0.81249 0.84247 0.79916 1.90705 1.74919 1.39903 1.36893 1.45973 1.07772 1.33751 1.50247 1.19707 0.85824 0.87882 0.98084 0.86576 1.22577 0.97618 0.95611 0.85195 1.86450 1.82853 1.40506 1.27288 1.19932 0.96651 0.99460 0.96372 1.20628 0.94637 0.93468 0.96894 1.21204 0.94352 1.02913 0.99262 1.17289 0.80599 0.94869 0.96533 1.91534 1.38473 1.85800 1.95291 1.20957 0.96420 1.00409 1.03231 1.17010 0.92453 0.89182 0.89673 1.91544 1.89599 1.60265 1.69135 1.21281 0.90935 1.01787 1.01358 0.90285 0.87809 0.88186 0.88683 0.75926 0.92790 0.91966 0.77399 0.83917 0.83735 0.83321 0.86573 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -21.16 13.93 55.55 0.77 -20.38 16 2 C 0.08 2.07 5.46 -17.34 -0.09 1.98 16 3 Si 0.91 20.16 24.41 -169.99 -4.15 16.01 16 4 H -0.27 -5.69 6.66 56.52 0.38 -5.32 16 5 H -0.29 -6.23 7.11 56.52 0.40 -5.82 16 6 H -0.24 -5.47 6.72 56.52 0.38 -5.09 16 7 C -0.44 -11.68 9.60 -37.73 -0.36 -12.05 16 8 H 0.09 2.62 8.06 -52.49 -0.42 2.20 16 9 C 0.08 2.01 5.13 -106.87 -0.55 1.46 16 10 C -0.22 -5.02 7.02 -38.81 -0.27 -5.29 16 11 C -0.08 -1.64 10.01 -39.72 -0.40 -2.03 16 12 C -0.21 -3.97 9.55 -38.91 -0.37 -4.34 16 13 C -0.11 -2.24 5.87 -105.04 -0.62 -2.85 16 14 C 0.57 10.63 7.77 -12.31 -0.10 10.53 16 15 O -0.55 -11.67 15.93 5.33 0.08 -11.59 16 16 N -0.72 -10.32 4.85 -55.87 -0.27 -10.59 16 17 C 0.19 2.39 2.44 -69.08 -0.17 2.22 16 18 H 0.12 1.62 7.02 -51.93 -0.36 1.26 16 19 C 0.07 0.75 6.87 37.16 0.26 1.01 16 20 O -0.57 -5.48 12.77 -35.23 -0.45 -5.93 16 21 C -0.12 -1.32 4.69 -104.54 -0.49 -1.82 16 22 C -0.04 -0.36 8.84 -39.60 -0.35 -0.71 16 23 C -0.16 -1.35 10.02 -39.51 -0.40 -1.74 16 24 C 0.13 1.16 7.30 -39.43 -0.29 0.88 16 25 F -0.13 -1.26 17.27 2.25 0.04 -1.22 16 26 C -0.19 -1.74 10.01 -39.45 -0.39 -2.14 16 27 C 0.14 1.43 7.24 -39.43 -0.29 1.14 16 28 F -0.13 -1.40 16.52 2.25 0.04 -1.37 16 29 C -0.13 -3.13 9.34 -38.44 -0.36 -3.49 16 30 H 0.29 6.78 8.30 -40.82 -0.34 6.44 16 31 H 0.10 2.34 4.43 -52.48 -0.23 2.11 16 32 H 0.10 1.66 8.06 -52.49 -0.42 1.24 16 33 H 0.10 1.41 6.38 -52.49 -0.33 1.07 16 34 H 0.40 5.03 4.36 -40.82 -0.18 4.85 16 35 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.38 2.16 9.12 45.56 0.42 2.57 16 38 H 0.14 1.22 6.17 -52.49 -0.32 0.90 16 39 H 0.14 0.92 8.06 -52.49 -0.42 0.50 16 40 H 0.15 1.09 8.06 -52.49 -0.42 0.67 16 41 H 0.12 2.78 7.64 -52.49 -0.40 2.38 16 LS Contribution 355.24 15.07 5.35 5.35 Total: -1.00 -29.64 355.24 -6.96 -36.59 By element: Atomic # 1 Polarization: 13.51 SS G_CDS: -3.14 Total: 10.37 kcal Atomic # 6 Polarization: -12.00 SS G_CDS: -5.23 Total: -17.23 kcal Atomic # 7 Polarization: -31.48 SS G_CDS: 0.50 Total: -30.98 kcal Atomic # 8 Polarization: -17.16 SS G_CDS: -0.37 Total: -17.52 kcal Atomic # 9 Polarization: -2.67 SS G_CDS: 0.08 Total: -2.59 kcal Atomic # 14 Polarization: 20.16 SS G_CDS: -4.15 Total: 16.01 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -29.64 -6.96 -36.59 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001362709144.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.333 kcal (2) G-P(sol) polarization free energy of solvation -29.637 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.970 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.956 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.593 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.926 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds