Wall clock time and date at job start Wed Apr 1 2020 04:04:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30823 * 1 3 3 Si 1.86805 * 119.99988 * 2 1 4 4 H 1.48503 * 109.46919 * 272.70040 * 3 2 1 5 5 H 1.48498 * 109.47295 * 32.70051 * 3 2 1 6 6 H 1.48504 * 109.47351 * 152.70285 * 3 2 1 7 7 C 1.39940 * 120.00266 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99490 * 346.77273 * 7 2 1 9 9 C 1.41437 * 119.99909 * 166.77545 * 7 2 1 10 10 C 1.40778 * 120.17800 * 329.07756 * 9 7 2 11 11 C 1.37716 * 120.04202 * 180.02562 * 10 9 7 12 12 C 1.38377 * 120.41013 * 359.67404 * 11 10 9 13 13 C 1.39887 * 120.35254 * 0.60833 * 12 11 10 14 14 C 1.47882 * 120.02104 * 179.68994 * 13 12 11 15 15 O 1.21545 * 119.99764 * 179.72274 * 14 13 12 16 16 N 1.34775 * 120.00214 * 359.73189 * 14 13 12 17 17 C 1.46500 * 120.00277 * 179.97438 * 16 14 13 18 18 H 1.09000 * 109.47213 * 329.00458 * 17 16 14 19 19 C 1.53000 * 109.47145 * 88.99869 * 17 16 14 20 20 O 1.42906 * 109.46753 * 65.00391 * 19 17 16 21 21 C 1.50697 * 109.47331 * 209.00330 * 17 16 14 22 22 C 1.38237 * 119.98629 * 332.54398 * 21 17 16 23 23 C 1.38186 * 120.04630 * 180.02562 * 22 21 17 24 24 C 1.38488 * 120.03070 * 359.97438 * 23 22 21 25 25 F 1.35103 * 120.01353 * 180.02562 * 24 23 22 26 26 C 1.38397 * 119.97339 * 0.02562 * 24 23 22 27 27 C 1.38436 * 119.95145 * 0.02562 * 26 24 23 28 28 F 1.35105 * 120.01602 * 179.97438 * 27 26 24 29 29 C 1.39026 * 119.95184 * 359.41809 * 13 12 11 30 30 H 0.97005 * 120.00146 * 0.02562 * 1 2 3 31 31 H 1.08004 * 119.98349 * 0.02562 * 10 9 7 32 32 H 1.07997 * 119.79302 * 180.02562 * 11 10 9 33 33 H 1.07992 * 119.82441 * 180.30119 * 12 11 10 34 34 H 0.97001 * 120.00150 * 359.97438 * 16 14 13 35 35 H 1.08999 * 109.47107 * 185.00261 * 19 17 16 36 36 H 1.08994 * 109.47708 * 305.00488 * 19 17 16 37 37 H 0.96703 * 113.99949 * 179.97438 * 20 19 17 38 38 H 1.08000 * 119.97226 * 0.02562 * 22 21 17 39 39 H 1.08002 * 119.97904 * 179.97438 * 23 22 21 40 40 H 1.08002 * 120.02646 * 179.72557 * 26 24 23 41 41 H 1.08000 * 120.20705 * 180.25309 * 29 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2423 1.6178 0.0000 4 1 2.4326 2.0794 -1.3986 5 1 1.4695 2.6356 0.7564 6 1 3.5673 1.4244 0.6421 7 6 2.0080 -1.2119 0.0005 8 1 1.4895 -2.1346 0.2150 9 6 3.3942 -1.2282 -0.2797 10 6 3.9519 -0.2711 -1.1485 11 6 5.3019 -0.2899 -1.4198 12 6 6.1202 -1.2419 -0.8377 13 6 5.5830 -2.2044 0.0236 14 6 6.4631 -3.2227 0.6363 15 8 5.9967 -4.0557 1.3885 16 7 7.7824 -3.2269 0.3608 17 6 8.6544 -4.2353 0.9683 18 1 8.2645 -4.5099 1.9484 19 6 8.7017 -5.4749 0.0727 20 8 9.3201 -5.1403 -1.1714 21 6 10.0438 -3.6720 1.1203 22 6 10.4879 -2.6864 0.2587 23 6 11.7619 -2.1694 0.3966 24 6 12.5953 -2.6378 1.3986 25 9 13.8407 -2.1318 1.5335 26 6 12.1518 -3.6246 2.2618 27 6 10.8756 -4.1426 2.1221 28 9 10.4416 -5.1063 2.9636 29 6 4.2220 -2.1996 0.3075 30 1 -0.4850 0.8401 -0.0004 31 1 3.3206 0.4784 -1.6026 32 1 5.7255 0.4465 -2.0866 33 1 7.1784 -1.2449 -1.0532 34 1 8.1546 -2.5622 -0.2397 35 1 9.2778 -6.2577 0.5659 36 1 7.6876 -5.8303 -0.1098 37 1 9.3845 -5.8805 -1.7903 38 1 9.8385 -2.3202 -0.5227 39 1 12.1079 -1.3997 -0.2774 40 1 12.8025 -3.9937 3.0407 41 1 3.8036 -2.9383 0.9750 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001362709144.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:04:40 Heat of formation + Delta-G solvation = -145.966470 kcal Electronic energy + Delta-G solvation = -29350.424923 eV Core-core repulsion = 24830.202106 eV Total energy + Delta-G solvation = -4520.222817 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 347.112 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -50.12450 -50.02600 -41.44167 -40.09975 -39.05889 -37.84240 -35.85464 -35.51571 -33.07763 -31.99805 -31.90512 -31.53078 -29.17856 -27.09853 -25.36772 -24.61543 -24.00904 -22.55761 -22.16786 -21.44555 -19.94786 -19.17494 -18.63572 -18.28744 -18.02531 -17.57718 -17.23116 -17.07649 -16.67018 -16.51465 -16.41571 -16.34046 -15.94537 -15.65274 -15.51876 -15.45345 -14.90616 -14.80254 -14.56619 -14.50446 -14.26176 -13.86528 -13.73633 -13.34142 -13.30139 -12.89609 -12.78134 -12.64148 -12.46971 -12.44574 -12.30342 -11.71689 -11.57701 -11.25929 -11.05163 -10.83716 -10.35790 -10.11753 -9.70170 -9.62394 -9.56030 -8.88670 -6.56521 -0.17012 -0.03190 0.15453 0.74596 1.25776 1.42334 1.49122 1.91559 1.97486 2.12336 2.30923 2.66102 2.78315 3.15830 3.34054 3.38256 3.44623 3.53615 3.81432 3.87927 4.02349 4.12934 4.25419 4.33217 4.40611 4.41936 4.54564 4.62959 4.70759 4.76332 4.85719 4.87670 4.91418 5.00387 5.07185 5.15610 5.35957 5.42078 5.63262 5.68186 5.70231 5.84344 6.09437 6.29607 6.48544 6.64919 6.74338 6.83501 7.14922 8.20473 Molecular weight = 347.11amu Principal moments of inertia in cm(-1) A = 0.016859 B = 0.002565 C = 0.002414 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1660.473128 B =10912.156582 C =11594.731323 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.856 5.856 2 C 0.040 3.960 3 Si 0.971 3.029 4 H -0.246 1.246 5 H -0.282 1.282 6 H -0.248 1.248 7 C -0.487 4.487 8 H 0.049 0.951 9 C 0.065 3.935 10 C -0.224 4.224 11 C -0.082 4.082 12 C -0.178 4.178 13 C -0.113 4.113 14 C 0.567 3.433 15 O -0.581 6.581 16 N -0.699 5.699 17 C 0.187 3.813 18 H 0.096 0.904 19 C 0.077 3.923 20 O -0.569 6.569 21 C -0.131 4.131 22 C -0.041 4.041 23 C -0.147 4.147 24 C 0.122 3.878 25 F -0.134 7.134 26 C -0.188 4.188 27 C 0.123 3.877 28 F -0.136 7.136 29 C -0.163 4.163 30 H 0.294 0.706 31 H 0.107 0.893 32 H 0.150 0.850 33 H 0.149 0.851 34 H 0.414 0.586 35 H 0.070 0.930 36 H 0.043 0.957 37 H 0.398 0.602 38 H 0.157 0.843 39 H 0.171 0.829 40 H 0.163 0.837 41 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.277 -3.132 -2.582 27.577 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.483 5.483 2 C -0.173 4.173 3 Si 0.794 3.206 4 H -0.171 1.171 5 H -0.209 1.209 6 H -0.171 1.171 7 C -0.517 4.517 8 H 0.067 0.933 9 C 0.063 3.937 10 C -0.243 4.243 11 C -0.099 4.099 12 C -0.197 4.197 13 C -0.116 4.116 14 C 0.356 3.644 15 O -0.462 6.462 16 N -0.353 5.353 17 C 0.082 3.918 18 H 0.114 0.886 19 C -0.002 4.002 20 O -0.377 6.377 21 C -0.132 4.132 22 C -0.059 4.059 23 C -0.166 4.166 24 C 0.102 3.898 25 F -0.113 7.113 26 C -0.207 4.207 27 C 0.103 3.897 28 F -0.115 7.115 29 C -0.184 4.184 30 H 0.105 0.895 31 H 0.125 0.875 32 H 0.168 0.832 33 H 0.167 0.833 34 H 0.255 0.745 35 H 0.088 0.912 36 H 0.061 0.939 37 H 0.248 0.752 38 H 0.175 0.825 39 H 0.188 0.812 40 H 0.181 0.819 41 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 26.753 -3.091 -1.725 26.986 hybrid contribution -0.597 -0.355 0.150 0.710 sum 26.156 -3.445 -1.575 26.429 Atomic orbital electron populations 1.69697 1.09300 1.31538 1.37766 1.26935 0.95546 1.04462 0.90351 0.85436 0.79387 0.75691 0.80124 1.17062 1.20862 1.17142 1.19473 0.92841 0.95104 1.44246 0.93314 1.17778 0.92715 0.92412 0.90842 1.21430 0.96926 1.03022 1.02919 1.21052 0.92281 0.98170 0.98435 1.21014 1.00044 0.97117 1.01533 1.19639 0.93130 0.97634 1.01230 1.18600 0.82525 0.83556 0.79696 1.90700 1.75876 1.41119 1.38501 1.45736 1.06212 1.33993 1.49397 1.19759 0.86427 0.88115 0.97477 0.88627 1.22364 0.97042 0.95006 0.85814 1.86386 1.82455 1.41849 1.27044 1.19814 0.95541 1.00487 0.97379 1.20773 0.95281 0.93003 0.96824 1.21454 0.93560 1.02681 0.98882 1.17419 0.80669 0.94878 0.96790 1.91537 1.38623 1.85791 1.95322 1.21103 0.96017 1.00105 1.03498 1.17130 0.93070 0.89592 0.89859 1.91523 1.89772 1.60708 1.69475 1.21200 0.92735 1.02017 1.02433 0.89537 0.87497 0.83243 0.83308 0.74485 0.91184 0.93876 0.75209 0.82541 0.81152 0.81929 0.89221 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -47.54 13.93 21.82 0.30 -47.23 16 2 C 0.04 2.17 5.46 85.26 0.47 2.64 16 3 Si 0.97 41.39 24.41 68.60 1.67 43.07 16 4 H -0.25 -9.45 6.66 99.48 0.66 -8.79 16 5 H -0.28 -11.45 7.11 99.48 0.71 -10.74 16 6 H -0.25 -10.61 6.72 99.48 0.67 -9.94 16 7 C -0.49 -27.86 9.60 23.47 0.23 -27.63 16 8 H 0.05 3.07 8.06 -2.91 -0.02 3.05 16 9 C 0.06 3.30 5.13 -21.32 -0.11 3.19 16 10 C -0.22 -9.73 7.02 22.77 0.16 -9.57 16 11 C -0.08 -2.80 10.01 22.18 0.22 -2.57 16 12 C -0.18 -5.71 9.55 22.70 0.22 -5.49 16 13 C -0.11 -4.50 5.87 -20.14 -0.12 -4.62 16 14 C 0.57 20.68 7.77 86.80 0.67 21.36 16 15 O -0.58 -25.49 15.93 -3.86 -0.06 -25.55 16 16 N -0.70 -18.07 4.85 -448.95 -2.18 -20.25 16 17 C 0.19 4.37 2.44 44.24 0.11 4.48 16 18 H 0.10 2.67 7.02 -2.39 -0.02 2.65 16 19 C 0.08 1.54 6.87 71.98 0.49 2.04 16 20 O -0.57 -9.19 12.77 -148.98 -1.90 -11.09 16 21 C -0.13 -2.48 4.69 -19.81 -0.09 -2.57 16 22 C -0.04 -0.60 8.84 22.26 0.20 -0.40 16 23 C -0.15 -1.85 10.02 22.32 0.22 -1.62 16 24 C 0.12 1.83 7.30 22.37 0.16 1.99 16 25 F -0.13 -2.13 17.27 44.97 0.78 -1.36 16 26 C -0.19 -2.95 10.01 22.35 0.22 -2.73 16 27 C 0.12 2.33 7.24 22.37 0.16 2.50 16 28 F -0.14 -2.90 16.52 44.97 0.74 -2.16 16 29 C -0.16 -7.97 9.34 23.01 0.21 -7.75 16 30 H 0.29 14.59 8.30 -92.70 -0.77 13.82 16 31 H 0.11 4.57 4.43 -2.91 -0.01 4.56 16 32 H 0.15 3.78 8.06 -2.91 -0.02 3.76 16 33 H 0.15 3.23 6.38 -2.91 -0.02 3.21 16 34 H 0.41 8.34 4.36 -92.71 -0.40 7.94 16 35 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 36 H 0.04 1.03 8.14 -2.39 -0.02 1.01 16 37 H 0.40 3.25 9.12 -74.06 -0.68 2.57 16 38 H 0.16 1.80 6.17 -2.91 -0.02 1.78 16 39 H 0.17 1.25 8.06 -2.91 -0.02 1.22 16 40 H 0.16 2.00 8.06 -2.91 -0.02 1.98 16 41 H 0.09 4.72 7.64 -2.91 -0.02 4.69 16 Total: -1.00 -70.18 355.24 2.75 -67.43 By element: Atomic # 1 Polarization: 23.97 SS G_CDS: -0.03 Total: 23.94 kcal Atomic # 6 Polarization: -30.22 SS G_CDS: 3.43 Total: -26.79 kcal Atomic # 7 Polarization: -65.61 SS G_CDS: -1.88 Total: -67.48 kcal Atomic # 8 Polarization: -34.68 SS G_CDS: -1.96 Total: -36.65 kcal Atomic # 9 Polarization: -5.03 SS G_CDS: 1.52 Total: -3.51 kcal Atomic # 14 Polarization: 41.39 SS G_CDS: 1.67 Total: 43.07 kcal Total: -70.18 2.75 -67.43 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001362709144.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.537 kcal (2) G-P(sol) polarization free energy of solvation -70.182 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.719 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.752 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.429 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.966 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds