Wall clock time and date at job start Wed Apr 1 2020 03:59:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30823 * 1 3 3 Si 1.86803 * 119.99942 * 2 1 4 4 H 1.48495 * 109.47111 * 269.99973 * 3 2 1 5 5 H 1.48501 * 109.46813 * 29.99914 * 3 2 1 6 6 H 1.48501 * 109.46932 * 149.99810 * 3 2 1 7 7 C 1.39948 * 120.00061 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00025 * 197.85299 * 7 2 1 9 9 C 1.41398 * 119.99882 * 17.84493 * 7 2 1 10 10 C 1.40713 * 120.24139 * 204.38975 * 9 7 2 11 11 C 1.37624 * 119.74481 * 180.02562 * 10 9 7 12 12 C 1.38637 * 120.24475 * 0.02562 * 11 10 9 13 13 S 1.76199 * 119.74566 * 179.97438 * 12 11 10 14 14 O 1.42103 * 106.40441 * 336.45490 * 13 12 11 15 15 O 1.42101 * 106.39821 * 203.53636 * 13 12 11 16 16 N 1.65600 * 107.22188 * 89.99930 * 13 12 11 17 17 C 1.46492 * 120.00009 * 64.99511 * 16 13 12 18 18 C 1.50703 * 109.47023 * 165.00605 * 17 16 13 19 19 C 1.34554 * 126.58607 * 95.02439 * 18 17 16 20 20 N 1.34009 * 108.03629 * 180.02562 * 19 18 17 21 21 C 1.30913 * 109.29854 * 0.05372 * 20 19 18 22 22 N 1.34818 * 108.60873 * 359.88359 * 21 20 19 23 23 C 1.47005 * 111.17647 * 180.22258 * 22 21 20 24 24 C 1.54388 * 105.53032 * 342.87955 * 23 22 21 25 25 C 1.51568 * 141.44674 * 179.78552 * 21 20 19 26 26 C 1.38633 * 120.50310 * 0.25252 * 12 11 10 27 27 C 1.37618 * 120.24515 * 359.44681 * 26 12 11 28 28 H 0.96995 * 120.00310 * 0.02562 * 1 2 3 29 29 H 1.08004 * 120.12930 * 359.97438 * 10 9 7 30 30 H 1.07994 * 119.87596 * 179.97438 * 11 10 9 31 31 H 0.97002 * 119.99547 * 245.00538 * 16 13 12 32 32 H 1.08998 * 109.47263 * 45.00228 * 17 16 13 33 33 H 1.09007 * 109.47383 * 285.00118 * 17 16 13 34 34 H 1.08009 * 125.98455 * 359.75315 * 19 18 17 35 35 H 1.08998 * 110.23522 * 101.90371 * 23 22 21 36 36 H 1.09003 * 110.23190 * 223.86746 * 23 22 21 37 37 H 1.09003 * 110.97032 * 267.60380 * 24 23 22 38 38 H 1.09000 * 110.99526 * 143.86394 * 24 23 22 39 39 H 1.09004 * 110.47522 * 315.33308 * 25 21 20 40 40 H 1.09000 * 110.47407 * 77.82249 * 25 21 20 41 41 H 1.07995 * 119.87379 * 179.71153 * 26 12 11 42 42 H 1.08006 * 120.12402 * 180.27294 * 27 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 2.4897 2.0464 -1.4000 5 1 1.4396 2.6527 0.7000 6 1 3.5398 1.4402 0.7001 7 6 2.0080 -1.2120 -0.0005 8 1 3.0490 -1.2346 0.2862 9 6 1.3520 -2.4069 -0.3763 10 6 1.8258 -3.6499 0.0825 11 6 1.1797 -4.8066 -0.2900 12 6 0.0666 -4.7502 -1.1145 13 16 -0.7500 -6.2393 -1.5838 14 8 0.2108 -7.2793 -1.4624 15 8 -1.4387 -5.9550 -2.7938 16 7 -1.9126 -6.5412 -0.4439 17 6 -3.0421 -5.6215 -0.2882 18 6 -4.1227 -6.2861 0.5252 19 6 -4.3109 -6.1740 1.8528 20 7 -5.3742 -6.9186 2.1855 21 6 -5.8544 -7.4917 1.1109 22 7 -5.1036 -7.1217 0.0540 23 6 -5.5986 -7.7317 -1.1886 24 6 -6.5106 -8.8951 -0.7433 25 6 -6.9599 -8.4247 0.6584 26 6 -0.4054 -3.5316 -1.5771 27 6 0.2211 -2.3619 -1.2124 28 1 -0.4850 0.8400 -0.0004 29 1 2.6935 -3.6961 0.7239 30 1 1.5418 -5.7617 0.0606 31 1 -1.8455 -7.3271 0.1209 32 1 -3.4356 -5.3597 -1.2704 33 1 -2.7074 -4.7180 0.2217 34 1 -3.7076 -5.5900 2.5321 35 1 -6.1701 -7.0036 -1.7643 36 1 -4.7655 -8.1109 -1.7803 37 1 -5.9502 -9.8280 -0.6806 38 1 -7.3648 -8.9998 -1.4121 39 1 -7.0438 -9.2738 1.3369 40 1 -7.9083 -7.8909 0.5979 41 1 -1.2706 -3.4999 -2.2227 42 1 -0.1509 -1.4132 -1.5704 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001364033289.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:59:59 Heat of formation + Delta-G solvation = 6.408514 kcal Electronic energy + Delta-G solvation = -27501.428576 eV Core-core repulsion = 23573.946372 eV Total energy + Delta-G solvation = -3927.482204 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.109 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.56084 -37.60646 -36.73412 -36.54239 -35.22776 -35.11265 -34.06829 -31.81301 -30.29094 -29.49680 -29.10341 -27.76622 -25.85201 -24.90117 -22.40054 -21.55972 -21.17027 -20.69531 -19.87656 -18.96984 -17.64869 -17.36180 -16.84252 -16.73911 -16.16574 -15.55392 -15.20591 -14.61274 -14.48594 -14.31343 -14.15636 -13.94410 -13.61647 -13.44340 -13.27678 -13.11815 -12.78099 -12.43918 -12.39372 -12.21886 -11.95902 -11.82700 -11.56244 -11.52284 -11.43017 -11.40071 -11.32699 -11.23602 -10.93518 -10.43027 -9.98279 -9.79918 -9.68672 -9.64281 -9.53912 -9.14579 -8.34688 -7.99116 -7.73564 -7.17525 -4.83112 1.13363 1.92411 2.21751 2.58599 2.86497 2.88811 2.91358 2.91547 3.04530 3.64333 3.64477 3.76270 4.10610 4.20658 4.33540 4.40405 4.47681 4.66111 5.01291 5.06450 5.09456 5.22217 5.27721 5.33947 5.35066 5.45913 5.54306 5.61511 5.76329 5.99943 6.05582 6.09528 6.34939 6.65291 6.67959 6.77796 6.87566 6.94201 7.01806 7.21561 7.31340 7.39840 7.59944 7.74341 7.93994 8.03568 8.28835 8.48468 8.61922 9.73817 Molecular weight = 347.11amu Principal moments of inertia in cm(-1) A = 0.015003 B = 0.002811 C = 0.002542 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1865.795033 B = 9959.185371 C =11013.424014 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.764 5.764 2 C 0.072 3.928 3 Si 0.918 3.082 4 H -0.263 1.263 5 H -0.273 1.273 6 H -0.258 1.258 7 C -0.433 4.433 8 H 0.088 0.912 9 C 0.139 3.861 10 C -0.238 4.238 11 C 0.004 3.996 12 C -0.788 4.788 13 S 2.692 3.308 14 O -0.984 6.984 15 O -0.986 6.986 16 N -1.125 6.125 17 C 0.199 3.801 18 C -0.011 4.011 19 C 0.002 3.998 20 N -0.482 5.482 21 C 0.183 3.817 22 N -0.470 5.470 23 C 0.097 3.903 24 C -0.129 4.129 25 C -0.039 4.039 26 C -0.018 4.018 27 C -0.182 4.182 28 H 0.289 0.711 29 H 0.100 0.900 30 H 0.104 0.896 31 H 0.411 0.589 32 H 0.081 0.919 33 H 0.096 0.904 34 H 0.179 0.821 35 H 0.092 0.908 36 H 0.093 0.907 37 H 0.087 0.913 38 H 0.101 0.899 39 H 0.096 0.904 40 H 0.095 0.905 41 H 0.102 0.898 42 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.247 -9.769 -0.535 15.676 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.386 5.386 2 C -0.150 4.150 3 Si 0.741 3.259 4 H -0.188 1.188 5 H -0.198 1.198 6 H -0.182 1.182 7 C -0.461 4.461 8 H 0.106 0.894 9 C 0.136 3.864 10 C -0.259 4.259 11 C -0.016 4.016 12 C -0.884 4.884 13 S 2.792 3.208 14 O -0.975 6.975 15 O -0.976 6.976 16 N -0.881 5.881 17 C 0.071 3.929 18 C -0.125 4.125 19 C -0.148 4.148 20 N -0.201 5.201 21 C -0.080 4.080 22 N -0.154 5.154 23 C -0.025 4.025 24 C -0.167 4.167 25 C -0.078 4.078 26 C -0.038 4.038 27 C -0.202 4.202 28 H 0.101 0.899 29 H 0.118 0.882 30 H 0.122 0.878 31 H 0.244 0.756 32 H 0.099 0.901 33 H 0.114 0.886 34 H 0.196 0.804 35 H 0.110 0.890 36 H 0.111 0.889 37 H 0.106 0.894 38 H 0.120 0.880 39 H 0.115 0.885 40 H 0.113 0.887 41 H 0.120 0.880 42 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -12.563 -10.060 -0.838 16.116 hybrid contribution 0.893 1.284 -0.014 1.564 sum -11.670 -8.776 -0.852 14.626 Atomic orbital electron populations 1.69806 1.07908 1.30427 1.30492 1.26140 0.94913 1.02153 0.91821 0.86135 0.80528 0.79448 0.79804 1.18784 1.19835 1.18173 1.19971 0.98516 0.91170 1.36393 0.89383 1.17858 0.90041 0.92145 0.86399 1.21055 1.04448 0.92679 1.07721 1.20159 0.92105 0.97304 0.92077 1.29077 1.16628 1.15647 1.27073 1.01237 0.72316 0.74404 0.72871 1.93497 1.60368 1.56956 1.86689 1.93475 1.74534 1.86339 1.43282 1.55892 1.38396 1.36030 1.57791 1.19473 0.82637 0.91415 0.99329 1.20936 0.95044 1.01553 0.95011 1.22235 0.97524 1.02802 0.92242 1.69909 1.11181 1.11919 1.27067 1.24298 0.97371 1.02211 0.84076 1.46311 1.23306 1.35556 1.10267 1.22433 0.99062 0.95777 0.85199 1.22740 0.99911 0.97785 0.96286 1.20629 0.94364 0.96971 0.95868 1.20245 0.96857 0.91691 0.95042 1.21333 1.00041 0.96842 1.01984 0.89936 0.88156 0.87780 0.75607 0.90053 0.88631 0.80369 0.89019 0.88860 0.89399 0.88031 0.88550 0.88666 0.87960 0.85957 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -17.75 10.95 55.55 0.61 -17.14 16 2 C 0.07 1.63 5.14 -17.34 -0.09 1.54 16 3 Si 0.92 16.81 29.60 -169.99 -5.03 11.78 16 4 H -0.26 -4.80 7.11 56.52 0.40 -4.40 16 5 H -0.27 -4.89 7.11 56.52 0.40 -4.49 16 6 H -0.26 -4.69 7.11 56.52 0.40 -4.28 16 7 C -0.43 -10.47 9.05 -37.74 -0.34 -10.81 16 8 H 0.09 2.02 7.91 -52.49 -0.42 1.61 16 9 C 0.14 3.47 5.57 -106.83 -0.60 2.87 16 10 C -0.24 -5.56 9.80 -38.87 -0.38 -5.94 16 11 C 0.00 0.08 9.49 -39.66 -0.38 -0.29 16 12 C -0.79 -16.89 5.97 -39.29 -0.23 -17.13 16 13 S 2.69 50.47 5.73 -107.50 -0.62 49.85 16 14 O -0.98 -20.52 17.26 -57.17 -0.99 -21.51 16 15 O -0.99 -20.27 16.72 -57.17 -0.96 -21.22 16 16 N -1.12 -16.88 5.99 -11.66 -0.07 -16.95 16 17 C 0.20 2.82 6.77 -5.20 -0.04 2.79 16 18 C -0.01 -0.15 6.64 -81.49 -0.54 -0.69 16 19 C 0.00 0.03 11.78 -17.90 -0.21 -0.19 16 20 N -0.48 -7.22 11.26 -10.56 -0.12 -7.34 16 21 C 0.18 2.26 8.58 -154.85 -1.33 0.93 16 22 N -0.47 -5.68 3.61 -107.74 -0.39 -6.07 16 23 C 0.10 0.80 7.78 -3.04 -0.02 0.78 16 24 C -0.13 -0.68 7.17 -25.20 -0.18 -0.86 16 25 C -0.04 -0.28 6.86 -26.65 -0.18 -0.46 16 26 C -0.02 -0.40 9.49 -39.66 -0.38 -0.78 16 27 C -0.18 -4.43 8.70 -38.87 -0.34 -4.77 16 28 H 0.29 6.03 8.30 -40.82 -0.34 5.69 16 29 H 0.10 2.16 8.06 -52.48 -0.42 1.74 16 30 H 0.10 2.08 7.60 -52.49 -0.40 1.68 16 31 H 0.41 5.56 8.64 -34.47 -0.30 5.26 16 32 H 0.08 1.15 7.75 -51.93 -0.40 0.74 16 33 H 0.10 1.36 8.14 -51.93 -0.42 0.94 16 34 H 0.18 2.27 8.06 -52.48 -0.42 1.85 16 35 H 0.09 0.65 8.14 -51.93 -0.42 0.22 16 36 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 37 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 38 H 0.10 0.27 8.14 -51.93 -0.42 -0.15 16 39 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 40 H 0.10 0.55 8.14 -51.93 -0.42 0.13 16 41 H 0.10 2.10 7.59 -52.49 -0.40 1.71 16 42 H 0.12 3.02 6.16 -52.48 -0.32 2.69 16 LS Contribution 368.29 15.07 5.55 5.55 Total: -1.00 -32.18 368.29 -12.42 -44.60 By element: Atomic # 1 Polarization: 16.63 SS G_CDS: -5.17 Total: 11.46 kcal Atomic # 6 Polarization: -27.78 SS G_CDS: -5.24 Total: -33.02 kcal Atomic # 7 Polarization: -47.53 SS G_CDS: 0.03 Total: -47.50 kcal Atomic # 8 Polarization: -40.78 SS G_CDS: -1.94 Total: -42.73 kcal Atomic # 14 Polarization: 16.81 SS G_CDS: -5.03 Total: 11.78 kcal Atomic # 16 Polarization: 50.47 SS G_CDS: -0.62 Total: 49.85 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -32.18 -12.42 -44.60 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364033289.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.011 kcal (2) G-P(sol) polarization free energy of solvation -32.183 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.828 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.420 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.602 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.409 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds