Wall clock time and date at job start Wed Apr 1 2020 03:59:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30823 * 1 3 3 Si 1.86803 * 119.99942 * 2 1 4 4 H 1.48495 * 109.47111 * 269.99973 * 3 2 1 5 5 H 1.48501 * 109.46813 * 29.99914 * 3 2 1 6 6 H 1.48501 * 109.46932 * 149.99810 * 3 2 1 7 7 C 1.39948 * 120.00061 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00025 * 197.85299 * 7 2 1 9 9 C 1.41398 * 119.99882 * 17.84493 * 7 2 1 10 10 C 1.40713 * 120.24139 * 204.38975 * 9 7 2 11 11 C 1.37624 * 119.74481 * 180.02562 * 10 9 7 12 12 C 1.38637 * 120.24475 * 0.02562 * 11 10 9 13 13 S 1.76199 * 119.74566 * 179.97438 * 12 11 10 14 14 O 1.42103 * 106.40441 * 336.45490 * 13 12 11 15 15 O 1.42101 * 106.39821 * 203.53636 * 13 12 11 16 16 N 1.65600 * 107.22188 * 89.99930 * 13 12 11 17 17 C 1.46492 * 120.00009 * 64.99511 * 16 13 12 18 18 C 1.50703 * 109.47023 * 165.00605 * 17 16 13 19 19 C 1.34554 * 126.58607 * 95.02439 * 18 17 16 20 20 N 1.34009 * 108.03629 * 180.02562 * 19 18 17 21 21 C 1.30913 * 109.29854 * 0.05372 * 20 19 18 22 22 N 1.34818 * 108.60873 * 359.88359 * 21 20 19 23 23 C 1.47005 * 111.17647 * 180.22258 * 22 21 20 24 24 C 1.54388 * 105.53032 * 342.87955 * 23 22 21 25 25 C 1.51568 * 141.44674 * 179.78552 * 21 20 19 26 26 C 1.38633 * 120.50310 * 0.25252 * 12 11 10 27 27 C 1.37618 * 120.24515 * 359.44681 * 26 12 11 28 28 H 0.96995 * 120.00310 * 0.02562 * 1 2 3 29 29 H 1.08004 * 120.12930 * 359.97438 * 10 9 7 30 30 H 1.07994 * 119.87596 * 179.97438 * 11 10 9 31 31 H 0.97002 * 119.99547 * 245.00538 * 16 13 12 32 32 H 1.08998 * 109.47263 * 45.00228 * 17 16 13 33 33 H 1.09007 * 109.47383 * 285.00118 * 17 16 13 34 34 H 1.08009 * 125.98455 * 359.75315 * 19 18 17 35 35 H 1.08998 * 110.23522 * 101.90371 * 23 22 21 36 36 H 1.09003 * 110.23190 * 223.86746 * 23 22 21 37 37 H 1.09003 * 110.97032 * 267.60380 * 24 23 22 38 38 H 1.09000 * 110.99526 * 143.86394 * 24 23 22 39 39 H 1.09004 * 110.47522 * 315.33308 * 25 21 20 40 40 H 1.09000 * 110.47407 * 77.82249 * 25 21 20 41 41 H 1.07995 * 119.87379 * 179.71153 * 26 12 11 42 42 H 1.08006 * 120.12402 * 180.27294 * 27 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 2.4897 2.0464 -1.4000 5 1 1.4396 2.6527 0.7000 6 1 3.5398 1.4402 0.7001 7 6 2.0080 -1.2120 -0.0005 8 1 3.0490 -1.2346 0.2862 9 6 1.3520 -2.4069 -0.3763 10 6 1.8258 -3.6499 0.0825 11 6 1.1797 -4.8066 -0.2900 12 6 0.0666 -4.7502 -1.1145 13 16 -0.7500 -6.2393 -1.5838 14 8 0.2108 -7.2793 -1.4624 15 8 -1.4387 -5.9550 -2.7938 16 7 -1.9126 -6.5412 -0.4439 17 6 -3.0421 -5.6215 -0.2882 18 6 -4.1227 -6.2861 0.5252 19 6 -4.3109 -6.1740 1.8528 20 7 -5.3742 -6.9186 2.1855 21 6 -5.8544 -7.4917 1.1109 22 7 -5.1036 -7.1217 0.0540 23 6 -5.5986 -7.7317 -1.1886 24 6 -6.5106 -8.8951 -0.7433 25 6 -6.9599 -8.4247 0.6584 26 6 -0.4054 -3.5316 -1.5771 27 6 0.2211 -2.3619 -1.2124 28 1 -0.4850 0.8400 -0.0004 29 1 2.6935 -3.6961 0.7239 30 1 1.5418 -5.7617 0.0606 31 1 -1.8455 -7.3271 0.1209 32 1 -3.4356 -5.3597 -1.2704 33 1 -2.7074 -4.7180 0.2217 34 1 -3.7076 -5.5900 2.5321 35 1 -6.1701 -7.0036 -1.7643 36 1 -4.7655 -8.1109 -1.7803 37 1 -5.9502 -9.8280 -0.6806 38 1 -7.3648 -8.9998 -1.4121 39 1 -7.0438 -9.2738 1.3369 40 1 -7.9083 -7.8909 0.5979 41 1 -1.2706 -3.4999 -2.2227 42 1 -0.1509 -1.4132 -1.5704 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001364033289.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:59:57 Heat of formation + Delta-G solvation = -14.142486 kcal Electronic energy + Delta-G solvation = -27502.319734 eV Core-core repulsion = 23573.946372 eV Total energy + Delta-G solvation = -3928.373362 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.109 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -43.47723 -39.38545 -38.21560 -37.45189 -36.84539 -36.33949 -35.80393 -32.69604 -32.07204 -31.29242 -30.04727 -28.51678 -27.62713 -25.98046 -23.31742 -23.06520 -22.95533 -21.56795 -20.83923 -20.42896 -19.42508 -18.76868 -18.32631 -17.56238 -17.49213 -17.21411 -16.43371 -15.88559 -15.74277 -15.47426 -15.33658 -15.13336 -14.95421 -14.76008 -14.30495 -14.14095 -14.08046 -13.95935 -13.80948 -13.58590 -13.16594 -13.10762 -13.06122 -12.92519 -12.91028 -12.88281 -12.60516 -12.47168 -11.99306 -11.94367 -11.56323 -11.39699 -11.23880 -10.96631 -10.57603 -10.51779 -9.80172 -9.55167 -9.33412 -8.87773 -6.65233 -0.39835 0.47342 0.91644 1.06072 1.35969 1.43414 1.50591 1.76847 2.00577 2.11387 2.29626 2.53059 2.88294 2.94149 3.38919 3.52135 3.55680 3.67351 3.86606 3.96148 4.08721 4.30623 4.32119 4.35550 4.44956 4.55448 4.59286 4.70492 4.75439 4.87468 4.89302 4.94737 5.00413 5.10253 5.13412 5.23817 5.35512 5.52149 5.59426 5.75470 5.79335 5.92608 6.01293 6.06929 6.15584 6.48820 6.68182 6.80700 7.06215 8.07084 Molecular weight = 347.11amu Principal moments of inertia in cm(-1) A = 0.015003 B = 0.002811 C = 0.002542 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1865.795033 B = 9959.185371 C =11013.424014 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.792 5.792 2 C 0.036 3.964 3 Si 0.990 3.010 4 H -0.260 1.260 5 H -0.263 1.263 6 H -0.255 1.255 7 C -0.465 4.465 8 H 0.090 0.910 9 C 0.111 3.889 10 C -0.258 4.258 11 C -0.001 4.001 12 C -0.797 4.797 13 S 2.729 3.271 14 O -1.000 7.000 15 O -0.999 6.999 16 N -1.109 6.109 17 C 0.200 3.800 18 C -0.023 4.023 19 C -0.013 4.013 20 N -0.523 5.523 21 C 0.182 3.818 22 N -0.474 5.474 23 C 0.082 3.918 24 C -0.113 4.113 25 C -0.039 4.039 26 C -0.019 4.019 27 C -0.206 4.206 28 H 0.299 0.701 29 H 0.110 0.890 30 H 0.124 0.876 31 H 0.421 0.579 32 H 0.085 0.915 33 H 0.092 0.908 34 H 0.181 0.819 35 H 0.105 0.895 36 H 0.091 0.909 37 H 0.094 0.906 38 H 0.136 0.864 39 H 0.109 0.891 40 H 0.114 0.886 41 H 0.118 0.882 42 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.680 -10.811 -1.117 17.472 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.415 5.415 2 C -0.184 4.184 3 Si 0.809 3.191 4 H -0.185 1.185 5 H -0.188 1.188 6 H -0.178 1.178 7 C -0.491 4.491 8 H 0.108 0.892 9 C 0.108 3.892 10 C -0.278 4.278 11 C -0.021 4.021 12 C -0.890 4.890 13 S 2.825 3.175 14 O -0.991 6.991 15 O -0.989 6.989 16 N -0.868 5.868 17 C 0.074 3.926 18 C -0.139 4.139 19 C -0.163 4.163 20 N -0.242 5.242 21 C -0.081 4.081 22 N -0.158 5.158 23 C -0.038 4.038 24 C -0.151 4.151 25 C -0.078 4.078 26 C -0.039 4.039 27 C -0.226 4.226 28 H 0.110 0.890 29 H 0.128 0.872 30 H 0.142 0.858 31 H 0.256 0.744 32 H 0.103 0.897 33 H 0.110 0.890 34 H 0.198 0.802 35 H 0.123 0.877 36 H 0.110 0.890 37 H 0.112 0.888 38 H 0.154 0.846 39 H 0.128 0.872 40 H 0.132 0.868 41 H 0.136 0.864 42 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -13.980 -11.101 -1.428 17.909 hybrid contribution 1.204 1.465 0.166 1.903 sum -12.776 -9.636 -1.262 16.053 Atomic orbital electron populations 1.69831 1.09232 1.31864 1.30565 1.26972 0.95609 1.05053 0.90797 0.85067 0.79166 0.75010 0.79825 1.18488 1.18765 1.17828 1.20235 0.98907 0.92135 1.37856 0.89170 1.18204 0.90717 0.93200 0.87094 1.21276 1.05228 0.92863 1.08433 1.20442 0.92035 0.97769 0.91839 1.29561 1.16758 1.16746 1.25942 1.00209 0.71912 0.72834 0.72580 1.93471 1.61594 1.56990 1.87037 1.93456 1.74683 1.86311 1.44470 1.55487 1.37587 1.36422 1.57348 1.19475 0.82447 0.91088 0.99610 1.20737 0.95701 1.02658 0.94774 1.22418 0.97900 1.03165 0.92845 1.69880 1.12110 1.13411 1.28831 1.25312 0.97901 1.01502 0.83413 1.46608 1.22597 1.34902 1.11679 1.22859 0.99749 0.97153 0.84067 1.22810 1.00384 0.96473 0.95420 1.20932 0.93348 0.96519 0.96985 1.20450 0.96997 0.91614 0.94837 1.21356 1.00928 0.97184 1.03152 0.88998 0.87204 0.85804 0.74380 0.89726 0.89034 0.80189 0.87706 0.89043 0.88785 0.84558 0.87245 0.86829 0.86433 0.87014 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -37.54 10.95 21.83 0.24 -37.30 16 2 C 0.04 1.63 5.14 85.26 0.44 2.06 16 3 Si 0.99 34.37 29.60 68.60 2.03 36.40 16 4 H -0.26 -8.87 7.11 99.48 0.71 -8.16 16 5 H -0.26 -8.64 7.11 99.48 0.71 -7.93 16 6 H -0.25 -8.63 7.11 99.48 0.71 -7.92 16 7 C -0.46 -23.07 9.05 23.46 0.21 -22.86 16 8 H 0.09 4.26 7.91 -2.91 -0.02 4.23 16 9 C 0.11 5.73 5.57 -21.29 -0.12 5.61 16 10 C -0.26 -12.28 9.80 22.73 0.22 -12.06 16 11 C 0.00 -0.05 9.49 22.22 0.21 0.17 16 12 C -0.80 -34.06 5.97 22.46 0.13 -33.92 16 13 S 2.73 99.28 5.73 -56.49 -0.32 98.95 16 14 O -1.00 -40.26 17.26 -128.00 -2.21 -42.47 16 15 O -1.00 -39.72 16.72 -128.00 -2.14 -41.86 16 16 N -1.11 -32.11 5.99 -190.80 -1.14 -33.25 16 17 C 0.20 5.59 6.77 85.64 0.58 6.17 16 18 C -0.02 -0.63 6.64 40.88 0.27 -0.36 16 19 C -0.01 -0.39 11.78 83.52 0.98 0.59 16 20 N -0.52 -15.56 11.26 -187.32 -2.11 -17.67 16 21 C 0.18 4.22 8.58 138.36 1.19 5.41 16 22 N -0.47 -10.78 3.61 -494.77 -1.79 -12.56 16 23 C 0.08 1.14 7.78 86.75 0.67 1.82 16 24 C -0.11 -0.76 7.17 31.59 0.23 -0.53 16 25 C -0.04 -0.44 6.86 30.64 0.21 -0.23 16 26 C -0.02 -0.86 9.49 22.22 0.21 -0.65 16 27 C -0.21 -10.37 8.70 22.73 0.20 -10.17 16 28 H 0.30 12.57 8.30 -92.71 -0.77 11.80 16 29 H 0.11 4.84 8.06 -2.91 -0.02 4.82 16 30 H 0.12 4.86 7.60 -2.91 -0.02 4.84 16 31 H 0.42 10.85 8.64 -96.75 -0.84 10.01 16 32 H 0.08 2.31 7.75 -2.39 -0.02 2.29 16 33 H 0.09 2.63 8.14 -2.38 -0.02 2.61 16 34 H 0.18 4.80 8.06 -2.91 -0.02 4.77 16 35 H 0.10 1.18 8.14 -2.39 -0.02 1.17 16 36 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 37 H 0.09 0.56 8.14 -2.39 -0.02 0.54 16 38 H 0.14 0.04 8.14 -2.39 -0.02 0.02 16 39 H 0.11 0.99 8.14 -2.38 -0.02 0.97 16 40 H 0.11 0.90 8.14 -2.39 -0.02 0.88 16 41 H 0.12 4.85 7.59 -2.91 -0.02 4.82 16 42 H 0.11 5.75 6.16 -2.91 -0.02 5.73 16 Total: -1.00 -70.33 368.29 -1.57 -71.90 By element: Atomic # 1 Polarization: 36.57 SS G_CDS: 0.23 Total: 36.80 kcal Atomic # 6 Polarization: -64.60 SS G_CDS: 5.64 Total: -58.95 kcal Atomic # 7 Polarization: -95.98 SS G_CDS: -4.80 Total: -100.78 kcal Atomic # 8 Polarization: -79.97 SS G_CDS: -4.35 Total: -84.32 kcal Atomic # 14 Polarization: 34.37 SS G_CDS: 2.03 Total: 36.40 kcal Atomic # 16 Polarization: 99.28 SS G_CDS: -0.32 Total: 98.95 kcal Total: -70.33 -1.57 -71.90 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364033289.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.760 kcal (2) G-P(sol) polarization free energy of solvation -70.333 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.572 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.570 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.903 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.142 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds