Wall clock time and date at job start Wed Apr 1 2020 04:20:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30824 * 1 3 3 Si 1.86801 * 119.99601 * 2 1 4 4 H 1.48497 * 109.47218 * 275.41139 * 3 2 1 5 5 H 1.48495 * 109.47366 * 35.41573 * 3 2 1 6 6 H 1.48509 * 109.46949 * 155.41445 * 3 2 1 7 7 C 1.39942 * 119.99972 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99907 * 341.71981 * 7 2 1 9 9 C 1.41395 * 119.99974 * 161.73024 * 7 2 1 10 10 C 1.40730 * 120.24191 * 330.21274 * 9 7 2 11 11 C 1.37600 * 119.74715 * 180.02562 * 10 9 7 12 12 C 1.38662 * 120.24363 * 359.72380 * 11 10 9 13 13 C 1.38617 * 120.50289 * 0.55688 * 12 11 10 14 14 S 1.76191 * 119.87704 * 179.71762 * 13 12 11 15 15 O 1.42102 * 106.40183 * 156.18436 * 14 13 12 16 16 O 1.42102 * 106.40320 * 23.27026 * 14 13 12 17 17 N 1.65597 * 107.22014 * 269.72881 * 14 13 12 18 18 C 1.46493 * 120.00236 * 64.99653 * 17 14 13 19 19 C 1.50706 * 109.47537 * 165.00119 * 18 17 14 20 20 C 1.34559 * 126.58259 * 95.02394 * 19 18 17 21 21 N 1.34000 * 108.03257 * 180.02562 * 20 19 18 22 22 C 1.30910 * 109.30322 * 0.10090 * 21 20 19 23 23 N 1.34820 * 108.60462 * 359.53306 * 22 21 20 24 24 C 1.47010 * 111.17481 * 180.02562 * 23 22 21 25 25 C 1.54387 * 105.59969 * 343.29432 * 24 23 22 26 26 C 1.51559 * 141.44725 * 179.78681 * 22 21 20 27 27 C 1.37637 * 120.24513 * 359.44585 * 13 12 11 28 28 H 0.97006 * 120.00360 * 359.97438 * 1 2 3 29 29 H 1.07998 * 120.13203 * 0.02562 * 10 9 7 30 30 H 1.07995 * 119.88002 * 180.02562 * 11 10 9 31 31 H 1.07995 * 119.74733 * 180.29410 * 12 11 10 32 32 H 0.97002 * 119.99998 * 245.00043 * 17 14 13 33 33 H 1.09001 * 109.47145 * 45.00467 * 18 17 14 34 34 H 1.08998 * 109.47544 * 285.00796 * 18 17 14 35 35 H 1.08001 * 125.98348 * 0.05978 * 20 19 18 36 36 H 1.09001 * 110.39626 * 224.16122 * 24 23 22 37 37 H 1.08999 * 110.00669 * 102.23548 * 24 23 22 38 38 H 1.08996 * 110.97295 * 267.37402 * 25 24 23 39 39 H 1.09000 * 110.99916 * 143.62328 * 25 24 23 40 40 H 1.08998 * 110.47926 * 315.23480 * 26 22 21 41 41 H 1.08997 * 110.48129 * 77.72561 * 26 22 21 42 42 H 1.08004 * 120.12738 * 180.25742 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2421 1.6178 0.0000 4 1 2.3753 2.1125 -1.3938 5 1 1.5015 2.6170 0.8113 6 1 3.5923 1.4100 0.5825 7 6 2.0079 -1.2119 -0.0005 8 1 1.5088 -2.1238 0.2924 9 6 3.3684 -1.2426 -0.3844 10 6 3.8634 -0.3105 -1.3154 11 6 5.1891 -0.3500 -1.6821 12 6 6.0374 -1.2998 -1.1338 13 6 5.5595 -2.2265 -0.2203 14 16 6.6504 -3.4309 0.4606 15 8 6.0813 -3.8333 1.6989 16 8 7.9616 -2.8954 0.3454 17 7 6.5978 -4.7562 -0.5310 18 6 7.0866 -4.6602 -1.9086 19 6 7.2757 -6.0451 -2.4723 20 6 6.3911 -6.7369 -3.2135 21 7 6.9390 -7.9222 -3.5141 22 6 8.1338 -7.9936 -2.9838 23 7 8.3853 -6.8399 -2.3333 24 6 9.7186 -6.8590 -1.7143 25 6 10.1425 -8.3433 -1.6873 26 6 9.3214 -8.9269 -2.8593 27 6 4.2372 -2.2057 0.1610 28 1 -0.4851 0.8401 0.0004 29 1 3.2054 0.4330 -1.7404 30 1 5.5713 0.3646 -2.3960 31 1 7.0775 -1.3205 -1.4237 32 1 6.2433 -5.5961 -0.1996 33 1 8.0390 -4.1302 -1.9201 34 1 6.3613 -4.1172 -2.5145 35 1 5.4113 -6.3962 -3.5141 36 1 9.6725 -6.4617 -0.7003 37 1 10.4175 -6.2781 -2.3161 38 1 9.8630 -8.8117 -0.7437 39 1 11.2120 -8.4475 -1.8704 40 1 8.9888 -9.9382 -2.6253 41 1 9.9080 -8.9224 -3.7779 42 1 3.8678 -2.9259 0.8760 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001364968003.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:20:11 Heat of formation + Delta-G solvation = 15.094994 kcal Electronic energy + Delta-G solvation = -27570.840357 eV Core-core repulsion = 23643.734827 eV Total energy + Delta-G solvation = -3927.105530 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.109 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.66611 -37.97228 -36.92595 -36.75021 -35.51023 -35.34477 -33.82170 -31.93162 -30.77588 -30.21534 -29.24328 -27.87257 -25.45440 -25.04682 -22.49267 -22.44941 -20.97717 -20.79950 -19.99844 -19.33218 -18.13957 -17.43422 -16.88538 -16.54345 -16.33973 -15.44510 -15.41171 -14.90931 -14.69424 -14.58287 -14.48986 -14.07105 -13.86120 -13.69560 -13.32086 -13.21228 -12.95129 -12.90215 -12.50191 -12.28910 -12.03596 -11.93873 -11.79519 -11.74152 -11.71830 -11.54344 -11.51134 -11.08493 -10.83607 -10.42771 -10.10151 -10.02005 -9.83859 -9.74595 -9.53643 -9.24484 -8.46807 -8.31956 -7.92677 -7.12142 -4.67845 0.76023 1.77404 1.86451 2.36966 2.48116 2.93279 2.96629 3.09064 3.17768 3.45147 3.56078 3.82302 3.99806 4.04033 4.24046 4.27987 4.32845 4.50994 4.78544 4.93270 5.00187 5.06265 5.11226 5.15028 5.26491 5.30160 5.46626 5.48218 5.61530 5.73478 5.81248 5.95148 6.15886 6.22555 6.41353 6.52193 6.67080 6.81860 6.83656 6.95973 7.05781 7.14621 7.34015 7.57695 7.72937 7.93786 8.14554 8.38129 8.57622 9.89579 Molecular weight = 347.11amu Principal moments of inertia in cm(-1) A = 0.019861 B = 0.002759 C = 0.002633 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1409.430780 B =10145.984013 C =10633.189483 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.798 5.798 2 C 0.083 3.917 3 Si 0.906 3.094 4 H -0.268 1.268 5 H -0.286 1.286 6 H -0.243 1.243 7 C -0.442 4.442 8 H 0.096 0.904 9 C 0.073 3.927 10 C -0.197 4.197 11 C -0.091 4.091 12 C -0.161 4.161 13 C -0.625 4.625 14 S 2.689 3.311 15 O -0.966 6.966 16 O -0.973 6.973 17 N -1.119 6.119 18 C 0.197 3.803 19 C -0.016 4.016 20 C 0.005 3.995 21 N -0.481 5.481 22 C 0.187 3.813 23 N -0.470 5.470 24 C 0.097 3.903 25 C -0.129 4.129 26 C -0.040 4.040 27 C -0.101 4.101 28 H 0.288 0.712 29 H 0.107 0.893 30 H 0.103 0.897 31 H 0.111 0.889 32 H 0.417 0.583 33 H 0.084 0.916 34 H 0.096 0.904 35 H 0.180 0.820 36 H 0.093 0.907 37 H 0.092 0.908 38 H 0.088 0.912 39 H 0.102 0.898 40 H 0.097 0.903 41 H 0.096 0.904 42 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.340 -11.950 -5.131 21.675 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.421 5.421 2 C -0.137 4.137 3 Si 0.732 3.268 4 H -0.194 1.194 5 H -0.213 1.213 6 H -0.166 1.166 7 C -0.470 4.470 8 H 0.114 0.886 9 C 0.069 3.931 10 C -0.217 4.217 11 C -0.110 4.110 12 C -0.182 4.182 13 C -0.716 4.716 14 S 2.784 3.216 15 O -0.956 6.956 16 O -0.963 6.963 17 N -0.878 5.878 18 C 0.070 3.930 19 C -0.130 4.130 20 C -0.145 4.145 21 N -0.200 5.200 22 C -0.076 4.076 23 N -0.154 5.154 24 C -0.025 4.025 25 C -0.167 4.167 26 C -0.079 4.079 27 C -0.122 4.122 28 H 0.099 0.901 29 H 0.124 0.876 30 H 0.121 0.879 31 H 0.129 0.871 32 H 0.251 0.749 33 H 0.102 0.898 34 H 0.114 0.886 35 H 0.197 0.803 36 H 0.112 0.888 37 H 0.110 0.890 38 H 0.107 0.893 39 H 0.120 0.880 40 H 0.115 0.885 41 H 0.114 0.886 42 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 17.386 -12.032 -4.740 21.668 hybrid contribution -0.303 1.542 0.046 1.572 sum 17.083 -10.491 -4.695 20.589 Atomic orbital electron populations 1.69678 1.08067 1.30587 1.33796 1.26170 0.94788 1.01759 0.90956 0.86371 0.81506 0.79841 0.79059 1.19376 1.21289 1.16636 1.19533 0.92858 0.96452 1.38115 0.88608 1.17788 0.93237 0.91495 0.90551 1.21314 0.95753 1.03204 1.01411 1.20701 0.93823 0.97627 0.98868 1.20049 0.98315 0.98605 1.01231 1.29877 1.10260 1.17214 1.14271 1.01714 0.74100 0.72934 0.72812 1.93565 1.79515 1.82215 1.40336 1.93515 1.37376 1.78894 1.86524 1.55725 1.79755 1.28155 1.24138 1.19519 1.00614 0.90902 0.81939 1.20846 0.87713 0.96258 1.08184 1.22257 1.00315 0.90496 1.01446 1.69921 1.05493 1.20833 1.23769 1.24320 0.95469 0.89346 0.98487 1.46321 1.13310 1.15233 1.40581 1.22445 0.80935 0.99063 1.00041 1.22748 1.01434 0.92960 0.99605 1.20644 0.90072 0.97693 0.99510 1.20850 0.90510 1.01583 0.99273 0.90123 0.87572 0.87859 0.87102 0.74940 0.89812 0.88597 0.80305 0.88814 0.89019 0.89331 0.87984 0.88454 0.88615 0.86220 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -20.47 13.93 55.55 0.77 -19.70 16 2 C 0.08 2.11 5.40 -17.34 -0.09 2.01 16 3 Si 0.91 19.92 24.52 -169.99 -4.17 15.76 16 4 H -0.27 -5.62 6.71 56.52 0.38 -5.24 16 5 H -0.29 -6.07 7.11 56.52 0.40 -5.67 16 6 H -0.24 -5.53 6.86 56.52 0.39 -5.14 16 7 C -0.44 -11.46 9.57 -37.74 -0.36 -11.82 16 8 H 0.10 2.58 8.06 -52.48 -0.42 2.16 16 9 C 0.07 1.78 5.10 -106.83 -0.55 1.24 16 10 C -0.20 -4.49 7.18 -38.87 -0.28 -4.76 16 11 C -0.09 -1.84 10.02 -39.66 -0.40 -2.24 16 12 C -0.16 -3.13 9.53 -39.28 -0.37 -3.51 16 13 C -0.62 -12.47 5.94 -39.66 -0.24 -12.71 16 14 S 2.69 46.17 5.73 -107.50 -0.62 45.55 16 15 O -0.97 -19.16 17.27 -57.17 -0.99 -20.15 16 16 O -0.97 -17.97 16.73 -57.17 -0.96 -18.93 16 17 N -1.12 -14.91 5.99 -11.66 -0.07 -14.98 16 18 C 0.20 2.38 6.77 -5.19 -0.04 2.35 16 19 C -0.02 -0.19 6.64 -81.49 -0.54 -0.73 16 20 C 0.00 0.06 11.78 -17.91 -0.21 -0.15 16 21 N -0.48 -6.68 11.26 -10.56 -0.12 -6.80 16 22 C 0.19 2.09 8.58 -154.85 -1.33 0.76 16 23 N -0.47 -5.05 3.61 -107.74 -0.39 -5.44 16 24 C 0.10 0.68 7.78 -3.04 -0.02 0.66 16 25 C -0.13 -0.56 7.17 -25.19 -0.18 -0.74 16 26 C -0.04 -0.25 6.86 -26.65 -0.18 -0.43 16 27 C -0.10 -2.27 9.26 -38.87 -0.36 -2.63 16 28 H 0.29 6.67 8.30 -40.82 -0.34 6.33 16 29 H 0.11 2.38 4.73 -52.49 -0.25 2.13 16 30 H 0.10 1.76 8.06 -52.49 -0.42 1.34 16 31 H 0.11 1.89 7.59 -52.49 -0.40 1.49 16 32 H 0.42 5.03 8.64 -34.47 -0.30 4.73 16 33 H 0.08 0.97 7.75 -51.93 -0.40 0.57 16 34 H 0.10 1.10 8.14 -51.93 -0.42 0.68 16 35 H 0.18 2.02 8.06 -52.49 -0.42 1.60 16 36 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.09 0.36 8.14 -51.93 -0.42 -0.06 16 39 H 0.10 0.18 8.14 -51.93 -0.42 -0.24 16 40 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16 41 H 0.10 0.46 8.14 -51.93 -0.42 0.04 16 42 H 0.12 2.59 7.60 -52.48 -0.40 2.19 16 LS Contribution 363.08 15.07 5.47 5.47 Total: -1.00 -33.22 363.08 -11.35 -44.57 By element: Atomic # 1 Polarization: 12.49 SS G_CDS: -5.14 Total: 7.35 kcal Atomic # 6 Polarization: -27.55 SS G_CDS: -5.15 Total: -32.70 kcal Atomic # 7 Polarization: -47.12 SS G_CDS: 0.20 Total: -46.92 kcal Atomic # 8 Polarization: -37.14 SS G_CDS: -1.94 Total: -39.08 kcal Atomic # 14 Polarization: 19.92 SS G_CDS: -4.17 Total: 15.76 kcal Atomic # 16 Polarization: 46.17 SS G_CDS: -0.62 Total: 45.55 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -33.22 -11.35 -44.57 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364968003.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.666 kcal (2) G-P(sol) polarization free energy of solvation -33.216 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.450 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.355 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.571 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.095 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds