Wall clock time and date at job start Wed Apr 1 2020 04:20:11
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.30824 * 1
3 3 Si 1.86801 * 119.99601 * 2 1
4 4 H 1.48497 * 109.47218 * 275.41139 * 3 2 1
5 5 H 1.48495 * 109.47366 * 35.41573 * 3 2 1
6 6 H 1.48509 * 109.46949 * 155.41445 * 3 2 1
7 7 C 1.39942 * 119.99972 * 180.02562 * 2 1 3
8 8 H 1.08004 * 119.99907 * 341.71981 * 7 2 1
9 9 C 1.41395 * 119.99974 * 161.73024 * 7 2 1
10 10 C 1.40730 * 120.24191 * 330.21274 * 9 7 2
11 11 C 1.37600 * 119.74715 * 180.02562 * 10 9 7
12 12 C 1.38662 * 120.24363 * 359.72380 * 11 10 9
13 13 C 1.38617 * 120.50289 * 0.55688 * 12 11 10
14 14 S 1.76191 * 119.87704 * 179.71762 * 13 12 11
15 15 O 1.42102 * 106.40183 * 156.18436 * 14 13 12
16 16 O 1.42102 * 106.40320 * 23.27026 * 14 13 12
17 17 N 1.65597 * 107.22014 * 269.72881 * 14 13 12
18 18 C 1.46493 * 120.00236 * 64.99653 * 17 14 13
19 19 C 1.50706 * 109.47537 * 165.00119 * 18 17 14
20 20 C 1.34559 * 126.58259 * 95.02394 * 19 18 17
21 21 N 1.34000 * 108.03257 * 180.02562 * 20 19 18
22 22 C 1.30910 * 109.30322 * 0.10090 * 21 20 19
23 23 N 1.34820 * 108.60462 * 359.53306 * 22 21 20
24 24 C 1.47010 * 111.17481 * 180.02562 * 23 22 21
25 25 C 1.54387 * 105.59969 * 343.29432 * 24 23 22
26 26 C 1.51559 * 141.44725 * 179.78681 * 22 21 20
27 27 C 1.37637 * 120.24513 * 359.44585 * 13 12 11
28 28 H 0.97006 * 120.00360 * 359.97438 * 1 2 3
29 29 H 1.07998 * 120.13203 * 0.02562 * 10 9 7
30 30 H 1.07995 * 119.88002 * 180.02562 * 11 10 9
31 31 H 1.07995 * 119.74733 * 180.29410 * 12 11 10
32 32 H 0.97002 * 119.99998 * 245.00043 * 17 14 13
33 33 H 1.09001 * 109.47145 * 45.00467 * 18 17 14
34 34 H 1.08998 * 109.47544 * 285.00796 * 18 17 14
35 35 H 1.08001 * 125.98348 * 0.05978 * 20 19 18
36 36 H 1.09001 * 110.39626 * 224.16122 * 24 23 22
37 37 H 1.08999 * 110.00669 * 102.23548 * 24 23 22
38 38 H 1.08996 * 110.97295 * 267.37402 * 25 24 23
39 39 H 1.09000 * 110.99916 * 143.62328 * 25 24 23
40 40 H 1.08998 * 110.47926 * 315.23480 * 26 22 21
41 41 H 1.08997 * 110.48129 * 77.72561 * 26 22 21
42 42 H 1.08004 * 120.12738 * 180.25742 * 27 13 12
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3082 0.0000 0.0000
3 14 2.2421 1.6178 0.0000
4 1 2.3753 2.1125 -1.3938
5 1 1.5015 2.6170 0.8113
6 1 3.5923 1.4100 0.5825
7 6 2.0079 -1.2119 -0.0005
8 1 1.5088 -2.1238 0.2924
9 6 3.3684 -1.2426 -0.3844
10 6 3.8634 -0.3105 -1.3154
11 6 5.1891 -0.3500 -1.6821
12 6 6.0374 -1.2998 -1.1338
13 6 5.5595 -2.2265 -0.2203
14 16 6.6504 -3.4309 0.4606
15 8 6.0813 -3.8333 1.6989
16 8 7.9616 -2.8954 0.3454
17 7 6.5978 -4.7562 -0.5310
18 6 7.0866 -4.6602 -1.9086
19 6 7.2757 -6.0451 -2.4723
20 6 6.3911 -6.7369 -3.2135
21 7 6.9390 -7.9222 -3.5141
22 6 8.1338 -7.9936 -2.9838
23 7 8.3853 -6.8399 -2.3333
24 6 9.7186 -6.8590 -1.7143
25 6 10.1425 -8.3433 -1.6873
26 6 9.3214 -8.9269 -2.8593
27 6 4.2372 -2.2057 0.1610
28 1 -0.4851 0.8401 0.0004
29 1 3.2054 0.4330 -1.7404
30 1 5.5713 0.3646 -2.3960
31 1 7.0775 -1.3205 -1.4237
32 1 6.2433 -5.5961 -0.1996
33 1 8.0390 -4.1302 -1.9201
34 1 6.3613 -4.1172 -2.5145
35 1 5.4113 -6.3962 -3.5141
36 1 9.6725 -6.4617 -0.7003
37 1 10.4175 -6.2781 -2.3161
38 1 9.8630 -8.8117 -0.7437
39 1 11.2120 -8.4475 -1.8704
40 1 8.9888 -9.9382 -2.6253
41 1 9.9080 -8.9224 -3.7779
42 1 3.8678 -2.9259 0.8760
RHF calculation, no. of doubly occupied orbitals= 61
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001364968003.mol2 42
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 04:20:11
Heat of formation + Delta-G solvation = 15.094994 kcal
Electronic energy + Delta-G solvation = -27570.840357 eV
Core-core repulsion = 23643.734827 eV
Total energy + Delta-G solvation = -3927.105530 eV
No. of doubly occupied orbitals = 61
Molecular weight
(most abundant/longest-lived isotopes) = 347.109 amu
Computer time = 0.79 seconds
Orbital eigenvalues (eV)
-42.66611 -37.97228 -36.92595 -36.75021 -35.51023 -35.34477 -33.82170 -31.93162
-30.77588 -30.21534 -29.24328 -27.87257 -25.45440 -25.04682 -22.49267 -22.44941
-20.97717 -20.79950 -19.99844 -19.33218 -18.13957 -17.43422 -16.88538 -16.54345
-16.33973 -15.44510 -15.41171 -14.90931 -14.69424 -14.58287 -14.48986 -14.07105
-13.86120 -13.69560 -13.32086 -13.21228 -12.95129 -12.90215 -12.50191 -12.28910
-12.03596 -11.93873 -11.79519 -11.74152 -11.71830 -11.54344 -11.51134 -11.08493
-10.83607 -10.42771 -10.10151 -10.02005 -9.83859 -9.74595 -9.53643 -9.24484
-8.46807 -8.31956 -7.92677 -7.12142 -4.67845 0.76023 1.77404 1.86451
2.36966 2.48116 2.93279 2.96629 3.09064 3.17768 3.45147 3.56078
3.82302 3.99806 4.04033 4.24046 4.27987 4.32845 4.50994 4.78544
4.93270 5.00187 5.06265 5.11226 5.15028 5.26491 5.30160 5.46626
5.48218 5.61530 5.73478 5.81248 5.95148 6.15886 6.22555 6.41353
6.52193 6.67080 6.81860 6.83656 6.95973 7.05781 7.14621 7.34015
7.57695 7.72937 7.93786 8.14554 8.38129 8.57622 9.89579
Molecular weight = 347.11amu
Principal moments of inertia in cm(-1)
A = 0.019861 B = 0.002759 C = 0.002633
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1409.430780 B =10145.984013 C =10633.189483
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.798 5.798
2 C 0.083 3.917
3 Si 0.906 3.094
4 H -0.268 1.268
5 H -0.286 1.286
6 H -0.243 1.243
7 C -0.442 4.442
8 H 0.096 0.904
9 C 0.073 3.927
10 C -0.197 4.197
11 C -0.091 4.091
12 C -0.161 4.161
13 C -0.625 4.625
14 S 2.689 3.311
15 O -0.966 6.966
16 O -0.973 6.973
17 N -1.119 6.119
18 C 0.197 3.803
19 C -0.016 4.016
20 C 0.005 3.995
21 N -0.481 5.481
22 C 0.187 3.813
23 N -0.470 5.470
24 C 0.097 3.903
25 C -0.129 4.129
26 C -0.040 4.040
27 C -0.101 4.101
28 H 0.288 0.712
29 H 0.107 0.893
30 H 0.103 0.897
31 H 0.111 0.889
32 H 0.417 0.583
33 H 0.084 0.916
34 H 0.096 0.904
35 H 0.180 0.820
36 H 0.093 0.907
37 H 0.092 0.908
38 H 0.088 0.912
39 H 0.102 0.898
40 H 0.097 0.903
41 H 0.096 0.904
42 H 0.120 0.880
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 17.340 -11.950 -5.131 21.675
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.421 5.421
2 C -0.137 4.137
3 Si 0.732 3.268
4 H -0.194 1.194
5 H -0.213 1.213
6 H -0.166 1.166
7 C -0.470 4.470
8 H 0.114 0.886
9 C 0.069 3.931
10 C -0.217 4.217
11 C -0.110 4.110
12 C -0.182 4.182
13 C -0.716 4.716
14 S 2.784 3.216
15 O -0.956 6.956
16 O -0.963 6.963
17 N -0.878 5.878
18 C 0.070 3.930
19 C -0.130 4.130
20 C -0.145 4.145
21 N -0.200 5.200
22 C -0.076 4.076
23 N -0.154 5.154
24 C -0.025 4.025
25 C -0.167 4.167
26 C -0.079 4.079
27 C -0.122 4.122
28 H 0.099 0.901
29 H 0.124 0.876
30 H 0.121 0.879
31 H 0.129 0.871
32 H 0.251 0.749
33 H 0.102 0.898
34 H 0.114 0.886
35 H 0.197 0.803
36 H 0.112 0.888
37 H 0.110 0.890
38 H 0.107 0.893
39 H 0.120 0.880
40 H 0.115 0.885
41 H 0.114 0.886
42 H 0.138 0.862
Dipole moment (debyes) X Y Z Total
from point charges 17.386 -12.032 -4.740 21.668
hybrid contribution -0.303 1.542 0.046 1.572
sum 17.083 -10.491 -4.695 20.589
Atomic orbital electron populations
1.69678 1.08067 1.30587 1.33796 1.26170 0.94788 1.01759 0.90956
0.86371 0.81506 0.79841 0.79059 1.19376 1.21289 1.16636 1.19533
0.92858 0.96452 1.38115 0.88608 1.17788 0.93237 0.91495 0.90551
1.21314 0.95753 1.03204 1.01411 1.20701 0.93823 0.97627 0.98868
1.20049 0.98315 0.98605 1.01231 1.29877 1.10260 1.17214 1.14271
1.01714 0.74100 0.72934 0.72812 1.93565 1.79515 1.82215 1.40336
1.93515 1.37376 1.78894 1.86524 1.55725 1.79755 1.28155 1.24138
1.19519 1.00614 0.90902 0.81939 1.20846 0.87713 0.96258 1.08184
1.22257 1.00315 0.90496 1.01446 1.69921 1.05493 1.20833 1.23769
1.24320 0.95469 0.89346 0.98487 1.46321 1.13310 1.15233 1.40581
1.22445 0.80935 0.99063 1.00041 1.22748 1.01434 0.92960 0.99605
1.20644 0.90072 0.97693 0.99510 1.20850 0.90510 1.01583 0.99273
0.90123 0.87572 0.87859 0.87102 0.74940 0.89812 0.88597 0.80305
0.88814 0.89019 0.89331 0.87984 0.88454 0.88615 0.86220
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 17.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.80 -20.47 13.93 55.55 0.77 -19.70 16
2 C 0.08 2.11 5.40 -17.34 -0.09 2.01 16
3 Si 0.91 19.92 24.52 -169.99 -4.17 15.76 16
4 H -0.27 -5.62 6.71 56.52 0.38 -5.24 16
5 H -0.29 -6.07 7.11 56.52 0.40 -5.67 16
6 H -0.24 -5.53 6.86 56.52 0.39 -5.14 16
7 C -0.44 -11.46 9.57 -37.74 -0.36 -11.82 16
8 H 0.10 2.58 8.06 -52.48 -0.42 2.16 16
9 C 0.07 1.78 5.10 -106.83 -0.55 1.24 16
10 C -0.20 -4.49 7.18 -38.87 -0.28 -4.76 16
11 C -0.09 -1.84 10.02 -39.66 -0.40 -2.24 16
12 C -0.16 -3.13 9.53 -39.28 -0.37 -3.51 16
13 C -0.62 -12.47 5.94 -39.66 -0.24 -12.71 16
14 S 2.69 46.17 5.73 -107.50 -0.62 45.55 16
15 O -0.97 -19.16 17.27 -57.17 -0.99 -20.15 16
16 O -0.97 -17.97 16.73 -57.17 -0.96 -18.93 16
17 N -1.12 -14.91 5.99 -11.66 -0.07 -14.98 16
18 C 0.20 2.38 6.77 -5.19 -0.04 2.35 16
19 C -0.02 -0.19 6.64 -81.49 -0.54 -0.73 16
20 C 0.00 0.06 11.78 -17.91 -0.21 -0.15 16
21 N -0.48 -6.68 11.26 -10.56 -0.12 -6.80 16
22 C 0.19 2.09 8.58 -154.85 -1.33 0.76 16
23 N -0.47 -5.05 3.61 -107.74 -0.39 -5.44 16
24 C 0.10 0.68 7.78 -3.04 -0.02 0.66 16
25 C -0.13 -0.56 7.17 -25.19 -0.18 -0.74 16
26 C -0.04 -0.25 6.86 -26.65 -0.18 -0.43 16
27 C -0.10 -2.27 9.26 -38.87 -0.36 -2.63 16
28 H 0.29 6.67 8.30 -40.82 -0.34 6.33 16
29 H 0.11 2.38 4.73 -52.49 -0.25 2.13 16
30 H 0.10 1.76 8.06 -52.49 -0.42 1.34 16
31 H 0.11 1.89 7.59 -52.49 -0.40 1.49 16
32 H 0.42 5.03 8.64 -34.47 -0.30 4.73 16
33 H 0.08 0.97 7.75 -51.93 -0.40 0.57 16
34 H 0.10 1.10 8.14 -51.93 -0.42 0.68 16
35 H 0.18 2.02 8.06 -52.49 -0.42 1.60 16
36 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16
37 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16
38 H 0.09 0.36 8.14 -51.93 -0.42 -0.06 16
39 H 0.10 0.18 8.14 -51.93 -0.42 -0.24 16
40 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16
41 H 0.10 0.46 8.14 -51.93 -0.42 0.04 16
42 H 0.12 2.59 7.60 -52.48 -0.40 2.19 16
LS Contribution 363.08 15.07 5.47 5.47
Total: -1.00 -33.22 363.08 -11.35 -44.57
By element:
Atomic # 1 Polarization: 12.49 SS G_CDS: -5.14 Total: 7.35 kcal
Atomic # 6 Polarization: -27.55 SS G_CDS: -5.15 Total: -32.70 kcal
Atomic # 7 Polarization: -47.12 SS G_CDS: 0.20 Total: -46.92 kcal
Atomic # 8 Polarization: -37.14 SS G_CDS: -1.94 Total: -39.08 kcal
Atomic # 14 Polarization: 19.92 SS G_CDS: -4.17 Total: 15.76 kcal
Atomic # 16 Polarization: 46.17 SS G_CDS: -0.62 Total: 45.55 kcal
Total LS contribution 5.47 Total: 5.47 kcal
Total: -33.22 -11.35 -44.57 kcal
The number of atoms in the molecule is 42
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001364968003.mol2 42
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 59.666 kcal
(2) G-P(sol) polarization free energy of solvation -33.216 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.450 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.355 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.571 kcal
(6) G-S(sol) free energy of system = (1) + (5) 15.095 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.79 seconds