Wall clock time and date at job start Wed Apr 1 2020 04:20:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30824 * 1 3 3 Si 1.86801 * 119.99601 * 2 1 4 4 H 1.48497 * 109.47218 * 275.41139 * 3 2 1 5 5 H 1.48495 * 109.47366 * 35.41573 * 3 2 1 6 6 H 1.48509 * 109.46949 * 155.41445 * 3 2 1 7 7 C 1.39942 * 119.99972 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99907 * 341.71981 * 7 2 1 9 9 C 1.41395 * 119.99974 * 161.73024 * 7 2 1 10 10 C 1.40730 * 120.24191 * 330.21274 * 9 7 2 11 11 C 1.37600 * 119.74715 * 180.02562 * 10 9 7 12 12 C 1.38662 * 120.24363 * 359.72380 * 11 10 9 13 13 C 1.38617 * 120.50289 * 0.55688 * 12 11 10 14 14 S 1.76191 * 119.87704 * 179.71762 * 13 12 11 15 15 O 1.42102 * 106.40183 * 156.18436 * 14 13 12 16 16 O 1.42102 * 106.40320 * 23.27026 * 14 13 12 17 17 N 1.65597 * 107.22014 * 269.72881 * 14 13 12 18 18 C 1.46493 * 120.00236 * 64.99653 * 17 14 13 19 19 C 1.50706 * 109.47537 * 165.00119 * 18 17 14 20 20 C 1.34559 * 126.58259 * 95.02394 * 19 18 17 21 21 N 1.34000 * 108.03257 * 180.02562 * 20 19 18 22 22 C 1.30910 * 109.30322 * 0.10090 * 21 20 19 23 23 N 1.34820 * 108.60462 * 359.53306 * 22 21 20 24 24 C 1.47010 * 111.17481 * 180.02562 * 23 22 21 25 25 C 1.54387 * 105.59969 * 343.29432 * 24 23 22 26 26 C 1.51559 * 141.44725 * 179.78681 * 22 21 20 27 27 C 1.37637 * 120.24513 * 359.44585 * 13 12 11 28 28 H 0.97006 * 120.00360 * 359.97438 * 1 2 3 29 29 H 1.07998 * 120.13203 * 0.02562 * 10 9 7 30 30 H 1.07995 * 119.88002 * 180.02562 * 11 10 9 31 31 H 1.07995 * 119.74733 * 180.29410 * 12 11 10 32 32 H 0.97002 * 119.99998 * 245.00043 * 17 14 13 33 33 H 1.09001 * 109.47145 * 45.00467 * 18 17 14 34 34 H 1.08998 * 109.47544 * 285.00796 * 18 17 14 35 35 H 1.08001 * 125.98348 * 0.05978 * 20 19 18 36 36 H 1.09001 * 110.39626 * 224.16122 * 24 23 22 37 37 H 1.08999 * 110.00669 * 102.23548 * 24 23 22 38 38 H 1.08996 * 110.97295 * 267.37402 * 25 24 23 39 39 H 1.09000 * 110.99916 * 143.62328 * 25 24 23 40 40 H 1.08998 * 110.47926 * 315.23480 * 26 22 21 41 41 H 1.08997 * 110.48129 * 77.72561 * 26 22 21 42 42 H 1.08004 * 120.12738 * 180.25742 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2421 1.6178 0.0000 4 1 2.3753 2.1125 -1.3938 5 1 1.5015 2.6170 0.8113 6 1 3.5923 1.4100 0.5825 7 6 2.0079 -1.2119 -0.0005 8 1 1.5088 -2.1238 0.2924 9 6 3.3684 -1.2426 -0.3844 10 6 3.8634 -0.3105 -1.3154 11 6 5.1891 -0.3500 -1.6821 12 6 6.0374 -1.2998 -1.1338 13 6 5.5595 -2.2265 -0.2203 14 16 6.6504 -3.4309 0.4606 15 8 6.0813 -3.8333 1.6989 16 8 7.9616 -2.8954 0.3454 17 7 6.5978 -4.7562 -0.5310 18 6 7.0866 -4.6602 -1.9086 19 6 7.2757 -6.0451 -2.4723 20 6 6.3911 -6.7369 -3.2135 21 7 6.9390 -7.9222 -3.5141 22 6 8.1338 -7.9936 -2.9838 23 7 8.3853 -6.8399 -2.3333 24 6 9.7186 -6.8590 -1.7143 25 6 10.1425 -8.3433 -1.6873 26 6 9.3214 -8.9269 -2.8593 27 6 4.2372 -2.2057 0.1610 28 1 -0.4851 0.8401 0.0004 29 1 3.2054 0.4330 -1.7404 30 1 5.5713 0.3646 -2.3960 31 1 7.0775 -1.3205 -1.4237 32 1 6.2433 -5.5961 -0.1996 33 1 8.0390 -4.1302 -1.9201 34 1 6.3613 -4.1172 -2.5145 35 1 5.4113 -6.3962 -3.5141 36 1 9.6725 -6.4617 -0.7003 37 1 10.4175 -6.2781 -2.3161 38 1 9.8630 -8.8117 -0.7437 39 1 11.2120 -8.4475 -1.8704 40 1 8.9888 -9.9382 -2.6253 41 1 9.9080 -8.9224 -3.7779 42 1 3.8678 -2.9259 0.8760 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001364968003.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:20:10 Heat of formation + Delta-G solvation = -8.194193 kcal Electronic energy + Delta-G solvation = -27571.850252 eV Core-core repulsion = 23643.734827 eV Total energy + Delta-G solvation = -3928.115425 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.109 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -43.46734 -39.69734 -38.37630 -37.45183 -37.00064 -36.39607 -35.64572 -32.70939 -32.55134 -31.89941 -30.06128 -28.51192 -27.26248 -25.98558 -24.12203 -23.05786 -22.69929 -21.56748 -20.90384 -20.67293 -19.74835 -18.68825 -18.08389 -17.67322 -17.55472 -17.06451 -16.70267 -16.45801 -15.85616 -15.62246 -15.35597 -15.31184 -14.86380 -14.74372 -14.69052 -14.30584 -14.10782 -14.04255 -13.83538 -13.59402 -13.40530 -13.25519 -13.13794 -13.09812 -12.97725 -12.89247 -12.55514 -12.46108 -12.07302 -11.93533 -11.80619 -11.58581 -11.12652 -10.95065 -10.61613 -10.54565 -10.02228 -9.69659 -9.32401 -8.97686 -6.60594 -0.64867 0.16114 0.64275 0.90520 1.20079 1.35355 1.42336 1.78168 1.95506 2.04036 2.18771 2.40333 2.69357 2.95401 3.28408 3.32664 3.45636 3.66284 3.86736 3.97190 4.08193 4.18148 4.32777 4.34017 4.43760 4.45527 4.56843 4.60280 4.68662 4.72251 4.75866 4.84541 4.90327 5.01554 5.05706 5.14355 5.32445 5.36444 5.42214 5.61847 5.75623 5.81083 5.90222 5.98490 6.07783 6.23506 6.57134 6.68428 7.08028 8.10614 Molecular weight = 347.11amu Principal moments of inertia in cm(-1) A = 0.019861 B = 0.002759 C = 0.002633 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1409.430780 B =10145.984013 C =10633.189483 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.842 5.842 2 C 0.048 3.952 3 Si 0.957 3.043 4 H -0.247 1.247 5 H -0.275 1.275 6 H -0.255 1.255 7 C -0.484 4.484 8 H 0.060 0.940 9 C 0.054 3.946 10 C -0.204 4.204 11 C -0.094 4.094 12 C -0.140 4.140 13 C -0.633 4.633 14 S 2.721 3.279 15 O -0.993 6.993 16 O -0.977 6.977 17 N -1.105 6.105 18 C 0.195 3.805 19 C -0.024 4.024 20 C -0.014 4.014 21 N -0.525 5.525 22 C 0.182 3.818 23 N -0.473 5.473 24 C 0.083 3.917 25 C -0.115 4.115 26 C -0.040 4.040 27 C -0.122 4.122 28 H 0.296 0.704 29 H 0.109 0.891 30 H 0.145 0.855 31 H 0.147 0.853 32 H 0.424 0.576 33 H 0.096 0.904 34 H 0.102 0.898 35 H 0.182 0.818 36 H 0.093 0.907 37 H 0.108 0.892 38 H 0.092 0.908 39 H 0.136 0.864 40 H 0.106 0.894 41 H 0.114 0.886 42 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.646 -11.797 -6.211 25.422 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.467 5.467 2 C -0.168 4.168 3 Si 0.779 3.221 4 H -0.172 1.172 5 H -0.201 1.201 6 H -0.178 1.178 7 C -0.513 4.513 8 H 0.079 0.921 9 C 0.051 3.949 10 C -0.223 4.223 11 C -0.113 4.113 12 C -0.161 4.161 13 C -0.721 4.721 14 S 2.814 3.186 15 O -0.984 6.984 16 O -0.966 6.966 17 N -0.867 5.867 18 C 0.069 3.931 19 C -0.139 4.139 20 C -0.164 4.164 21 N -0.245 5.245 22 C -0.082 4.082 23 N -0.157 5.157 24 C -0.037 4.037 25 C -0.153 4.153 26 C -0.079 4.079 27 C -0.143 4.143 28 H 0.107 0.893 29 H 0.126 0.874 30 H 0.163 0.837 31 H 0.165 0.835 32 H 0.260 0.740 33 H 0.114 0.886 34 H 0.120 0.880 35 H 0.199 0.801 36 H 0.111 0.889 37 H 0.126 0.874 38 H 0.110 0.890 39 H 0.154 0.846 40 H 0.125 0.875 41 H 0.132 0.868 42 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 21.686 -11.860 -5.826 25.394 hybrid contribution -1.365 1.295 0.299 1.905 sum 20.321 -10.565 -5.527 23.560 Atomic orbital electron populations 1.69707 1.09139 1.31711 1.36189 1.26820 0.95383 1.04136 0.90424 0.85615 0.79649 0.76675 0.80126 1.17175 1.20108 1.17848 1.19492 0.94309 0.95977 1.41537 0.92148 1.17938 0.92821 0.92842 0.91306 1.21519 0.97221 1.02677 1.00910 1.21181 0.92668 0.98334 0.99130 1.20641 0.99878 0.96664 0.98894 1.30373 1.09634 1.18301 1.13815 1.00800 0.73079 0.72616 0.72139 1.93531 1.79936 1.82538 1.42350 1.93506 1.37001 1.79487 1.86649 1.55411 1.79534 1.27092 1.24614 1.19669 1.01282 0.91329 0.80810 1.20738 0.88414 0.96347 1.08403 1.22459 1.00927 0.90847 1.02160 1.69878 1.07344 1.21573 1.25689 1.25263 0.95505 0.90400 0.96999 1.46624 1.14065 1.14674 1.40325 1.22857 0.79415 1.01385 1.00055 1.22815 1.02981 0.90555 0.98921 1.20925 0.88564 0.97190 1.01242 1.20874 0.91726 1.01710 0.99996 0.89323 0.87361 0.83718 0.83536 0.74036 0.88629 0.87997 0.80115 0.88857 0.87397 0.88981 0.84598 0.87539 0.86816 0.86971 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -45.30 13.93 21.83 0.30 -45.00 16 2 C 0.05 2.51 5.40 85.26 0.46 2.98 16 3 Si 0.96 41.11 24.52 68.60 1.68 42.79 16 4 H -0.25 -9.68 6.71 99.48 0.67 -9.02 16 5 H -0.27 -11.17 7.11 99.48 0.71 -10.46 16 6 H -0.25 -11.27 6.86 99.48 0.68 -10.59 16 7 C -0.48 -26.71 9.57 23.46 0.22 -26.49 16 8 H 0.06 3.59 8.06 -2.91 -0.02 3.57 16 9 C 0.05 2.70 5.10 -21.29 -0.11 2.59 16 10 C -0.20 -9.03 7.18 22.73 0.16 -8.87 16 11 C -0.09 -3.48 10.02 22.22 0.22 -3.26 16 12 C -0.14 -4.95 9.53 22.46 0.21 -4.73 16 13 C -0.63 -24.23 5.94 22.22 0.13 -24.10 16 14 S 2.72 88.29 5.73 -56.49 -0.32 87.97 16 15 O -0.99 -38.74 17.27 -128.00 -2.21 -40.95 16 16 O -0.98 -32.83 16.73 -128.00 -2.14 -34.97 16 17 N -1.10 -27.53 5.99 -190.79 -1.14 -28.68 16 18 C 0.20 4.29 6.77 85.64 0.58 4.87 16 19 C -0.02 -0.54 6.64 40.88 0.27 -0.27 16 20 C -0.01 -0.36 11.78 83.52 0.98 0.62 16 21 N -0.53 -14.46 11.26 -187.34 -2.11 -16.56 16 22 C 0.18 3.80 8.58 138.35 1.19 4.98 16 23 N -0.47 -9.20 3.61 -494.77 -1.79 -10.99 16 24 C 0.08 0.90 7.78 86.75 0.67 1.57 16 25 C -0.11 -0.55 7.17 31.59 0.23 -0.32 16 26 C -0.04 -0.38 6.86 30.65 0.21 -0.17 16 27 C -0.12 -5.58 9.26 22.73 0.21 -5.37 16 28 H 0.30 14.24 8.30 -92.70 -0.77 13.47 16 29 H 0.11 4.70 4.73 -2.91 -0.01 4.69 16 30 H 0.15 4.16 8.06 -2.91 -0.02 4.13 16 31 H 0.15 4.18 7.59 -2.91 -0.02 4.16 16 32 H 0.42 9.75 8.64 -96.74 -0.84 8.91 16 33 H 0.10 1.90 7.75 -2.39 -0.02 1.88 16 34 H 0.10 2.12 8.14 -2.39 -0.02 2.10 16 35 H 0.18 4.23 8.06 -2.91 -0.02 4.20 16 36 H 0.09 1.03 8.14 -2.39 -0.02 1.02 16 37 H 0.11 0.83 8.14 -2.39 -0.02 0.81 16 38 H 0.09 0.41 8.14 -2.39 -0.02 0.40 16 39 H 0.14 -0.21 8.14 -2.39 -0.02 -0.23 16 40 H 0.11 0.84 8.14 -2.39 -0.02 0.82 16 41 H 0.11 0.70 8.14 -2.39 -0.02 0.68 16 42 H 0.11 5.14 7.60 -2.91 -0.02 5.12 16 Total: -1.00 -74.77 363.08 -1.91 -76.67 By element: Atomic # 1 Polarization: 25.51 SS G_CDS: 0.17 Total: 25.68 kcal Atomic # 6 Polarization: -61.61 SS G_CDS: 5.65 Total: -55.96 kcal Atomic # 7 Polarization: -96.50 SS G_CDS: -4.73 Total: -101.23 kcal Atomic # 8 Polarization: -71.56 SS G_CDS: -4.35 Total: -75.92 kcal Atomic # 14 Polarization: 41.11 SS G_CDS: 1.68 Total: 42.79 kcal Atomic # 16 Polarization: 88.29 SS G_CDS: -0.32 Total: 87.97 kcal Total: -74.77 -1.91 -76.67 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364968003.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.478 kcal (2) G-P(sol) polarization free energy of solvation -74.767 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.289 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.906 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.672 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.194 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds