Wall clock time and date at job start Wed Apr 1 2020 05:13:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38423 * 122.53923 * 2 1 4 4 C 1.33386 * 114.91957 * 179.97438 * 3 2 1 5 5 S 1.75877 * 109.59648 * 0.02562 * 4 3 2 6 6 C 1.33389 * 122.53783 * 179.70933 * 2 1 3 7 7 C 1.50695 * 125.20387 * 0.02741 * 6 2 1 8 8 H 1.09001 * 109.47051 * 344.99653 * 7 6 2 9 9 C 1.52995 * 109.47178 * 104.99913 * 7 6 2 10 10 O 1.42901 * 109.47124 * 55.00190 * 9 7 6 11 11 N 1.46497 * 109.46966 * 224.99764 * 7 6 2 12 12 C 1.34782 * 119.99897 * 154.99994 * 11 7 6 13 13 O 1.21565 * 120.00084 * 0.02562 * 12 11 7 14 14 N 1.34777 * 119.99654 * 180.02562 * 12 11 7 15 15 C 1.39247 * 119.99480 * 174.84540 * 14 12 11 16 16 C 1.39686 * 119.57299 * 185.33089 * 15 14 12 17 17 C 1.38651 * 119.49529 * 179.97438 * 16 15 14 18 18 C 1.38347 * 118.66959 * 0.02562 * 17 16 15 19 19 C 1.40576 * 119.13228 * 359.97438 * 18 17 16 20 20 C 1.41331 * 119.78533 * 180.02562 * 19 18 17 21 21 H 1.07999 * 120.00186 * 359.97438 * 20 19 18 22 22 C 1.40030 * 119.99831 * 180.02562 * 20 19 18 23 23 N 1.30737 * 120.00019 * 359.97438 * 22 20 19 24 24 Si 1.86801 * 119.99888 * 179.97438 * 22 20 19 25 25 H 1.48505 * 109.46999 * 89.99913 * 24 22 20 26 26 H 1.48498 * 109.47161 * 209.99553 * 24 22 20 27 27 H 1.48496 * 109.47600 * 329.99990 * 24 22 20 28 28 N 1.31903 * 119.57726 * 5.05696 * 15 14 12 29 29 H 1.09001 * 109.47335 * 90.02060 * 1 2 3 30 30 H 1.09001 * 109.47383 * 330.02232 * 1 2 3 31 31 H 1.08998 * 109.47689 * 210.02529 * 1 2 3 32 32 H 1.08003 * 122.54193 * 359.95784 * 3 2 1 33 33 H 1.08010 * 125.19943 * 179.97438 * 4 3 2 34 34 H 1.09000 * 109.47585 * 174.99771 * 9 7 6 35 35 H 1.09005 * 109.47455 * 295.00239 * 9 7 6 36 36 H 0.96699 * 114.00193 * 180.02562 * 10 9 7 37 37 H 0.97000 * 120.00149 * 335.00610 * 11 7 6 38 38 H 0.97001 * 120.00634 * 354.84500 * 14 12 11 39 39 H 1.08000 * 120.25443 * 359.95875 * 16 15 14 40 40 H 1.08001 * 120.66232 * 180.02562 * 17 16 15 41 41 H 1.07997 * 120.43565 * 179.97438 * 18 17 16 42 42 H 0.97005 * 120.00434 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2515 1.1669 0.0000 4 6 3.5736 0.9901 0.0005 5 16 3.9386 -0.7304 0.0004 6 6 2.2244 -1.1245 0.0057 7 6 1.6536 -2.5192 0.0122 8 1 0.5972 -2.4781 0.2776 9 6 1.8065 -3.1393 -1.3781 10 8 3.1783 -3.0869 -1.7748 11 7 2.3722 -3.3363 0.9930 12 6 1.7713 -4.4082 1.5467 13 8 0.6333 -4.6972 1.2319 14 7 2.4323 -5.1596 2.4495 15 6 1.7773 -6.2016 3.1010 16 6 2.4351 -6.9027 4.1144 17 6 1.7813 -7.9396 4.7623 18 6 0.4880 -8.2498 4.3813 19 6 -0.1197 -7.5068 3.3542 20 6 -1.4405 -7.8115 2.9543 21 1 -1.9796 -8.6132 3.4372 22 6 -2.0499 -7.0747 1.9313 23 7 -1.3973 -6.1045 1.3465 24 14 -3.7955 -7.4779 1.4023 25 1 -4.7539 -6.6803 2.2090 26 1 -3.9654 -7.1490 -0.0358 27 1 -4.0551 -8.9247 1.6133 28 7 0.5419 -6.5103 2.7569 29 1 -0.3634 -0.0004 -1.0277 30 1 -0.3634 0.8902 0.5135 31 1 -0.3634 -0.8897 0.5142 32 1 1.7965 2.1464 -0.0007 33 1 4.3077 1.7823 0.0002 34 1 1.4754 -4.1774 -1.3514 35 1 1.2001 -2.5828 -2.0929 36 1 3.3497 -3.4634 -2.6488 37 1 3.2804 -3.1059 1.2441 38 1 3.3641 -4.9747 2.6454 39 1 3.4453 -6.6394 4.3909 40 1 2.2718 -8.4940 5.5488 41 1 -0.0478 -9.0522 4.8665 42 1 -1.8192 -5.5943 0.6376 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001366530708.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:13:30 Heat of formation + Delta-G solvation = 22.480399 kcal Electronic energy + Delta-G solvation = -28121.010763 eV Core-core repulsion = 24194.225488 eV Total energy + Delta-G solvation = -3926.785275 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.109 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -39.72278 -38.65006 -37.66841 -36.68412 -34.39938 -33.80142 -32.95980 -31.20057 -30.25556 -29.55782 -28.38487 -26.72593 -25.47112 -23.46008 -22.52839 -21.48133 -20.95721 -19.91369 -18.77883 -17.78570 -17.63243 -17.18392 -16.68670 -16.08887 -15.30669 -15.07350 -14.85769 -14.60762 -14.39513 -14.02055 -13.90311 -13.68379 -13.43354 -13.08783 -13.04546 -12.73827 -12.56041 -12.23415 -12.04235 -11.89920 -11.76772 -11.68085 -11.33504 -11.13826 -10.92566 -10.62914 -10.61410 -10.43433 -9.98813 -9.90090 -9.67623 -9.13099 -9.00120 -8.67825 -8.49206 -8.26796 -7.91709 -7.18193 -6.90749 -6.08324 -4.35695 0.95362 1.64082 2.04817 2.61562 2.86954 3.15441 3.18472 3.21136 3.29114 3.30278 4.08968 4.16043 4.37281 4.64112 4.77152 4.86386 4.97910 5.22918 5.33883 5.38467 5.43087 5.49763 5.60172 5.73736 5.86252 5.96996 6.02389 6.08672 6.13946 6.40946 6.45701 6.51532 6.64352 6.83290 6.88472 6.95291 7.26323 7.38938 7.63864 7.65659 7.77482 7.85391 8.20551 8.32816 8.67990 8.83069 9.09718 9.59523 10.30298 10.52565 Molecular weight = 347.11amu Principal moments of inertia in cm(-1) A = 0.012634 B = 0.003447 C = 0.002963 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2215.755337 B = 8120.214949 C = 9446.229485 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C -0.103 4.103 3 C -0.131 4.131 4 C -0.230 4.230 5 S 0.140 5.860 6 C -0.177 4.177 7 C 0.245 3.755 8 H 0.118 0.882 9 C 0.066 3.934 10 O -0.566 6.566 11 N -0.748 5.748 12 C 0.667 3.333 13 O -0.464 6.464 14 N -0.672 5.672 15 C 0.387 3.613 16 C -0.357 4.357 17 C -0.036 4.036 18 C -0.307 4.307 19 C 0.272 3.728 20 C -0.426 4.426 21 H 0.081 0.919 22 C 0.058 3.942 23 N -0.649 5.649 24 Si 0.893 3.107 25 H -0.272 1.272 26 H -0.279 1.279 27 H -0.264 1.264 28 N -0.471 5.471 29 H 0.069 0.931 30 H 0.066 0.934 31 H 0.072 0.928 32 H 0.136 0.864 33 H 0.160 0.840 34 H 0.065 0.935 35 H 0.050 0.950 36 H 0.375 0.625 37 H 0.385 0.615 38 H 0.395 0.605 39 H 0.090 0.910 40 H 0.095 0.905 41 H 0.096 0.904 42 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.223 13.634 -6.942 17.369 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.116 4.116 3 C -0.162 4.162 4 C -0.366 4.366 5 S 0.406 5.594 6 C -0.295 4.295 7 C 0.137 3.863 8 H 0.135 0.865 9 C -0.014 4.014 10 O -0.371 6.371 11 N -0.408 5.408 12 C 0.366 3.634 13 O -0.328 6.328 14 N -0.320 5.320 15 C 0.148 3.852 16 C -0.383 4.383 17 C -0.060 4.060 18 C -0.330 4.330 19 C 0.147 3.853 20 C -0.457 4.457 21 H 0.099 0.901 22 C -0.172 4.172 23 N -0.268 5.268 24 Si 0.718 3.282 25 H -0.197 1.197 26 H -0.204 1.204 27 H -0.188 1.188 28 N -0.189 5.189 29 H 0.088 0.912 30 H 0.085 0.915 31 H 0.091 0.909 32 H 0.153 0.847 33 H 0.178 0.822 34 H 0.083 0.917 35 H 0.068 0.932 36 H 0.221 0.779 37 H 0.218 0.782 38 H 0.228 0.772 39 H 0.108 0.892 40 H 0.113 0.887 41 H 0.114 0.886 42 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 8.059 13.448 -7.514 17.386 hybrid contribution -0.581 0.293 0.100 0.658 sum 7.478 13.741 -7.414 17.312 Atomic orbital electron populations 1.20588 0.89773 1.03175 1.02302 1.18807 0.97464 0.91408 1.03959 1.19969 0.92869 0.98981 1.04372 1.25689 0.99785 1.00106 1.10990 1.84275 1.05190 0.98516 1.71438 1.24296 0.96567 0.98109 1.10566 1.19120 0.97357 0.82821 0.86966 0.86484 1.22668 0.82933 1.00717 0.95045 1.86454 1.26148 1.85159 1.39332 1.45346 1.17831 1.30529 1.47086 1.16398 0.86009 0.80296 0.80729 1.91377 1.13664 1.67864 1.59919 1.42540 1.13858 1.32745 1.42856 1.18336 0.91353 0.86593 0.88939 1.20447 1.01447 1.08115 1.08336 1.20542 0.94277 0.94795 0.96390 1.21620 0.97064 1.07351 1.06990 1.18387 0.92769 0.86708 0.87480 1.19560 0.96681 1.14351 1.15063 0.90052 1.26175 0.98979 0.95222 0.96775 1.70360 1.33712 1.09594 1.13091 0.86563 0.83535 0.79864 0.78252 1.19711 1.20400 1.18820 1.68687 1.04012 1.17885 1.28341 0.91230 0.91535 0.90909 0.84656 0.82247 0.91703 0.93182 0.77860 0.78187 0.77189 0.89163 0.88652 0.88626 0.91793 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.05 9.82 36.00 0.35 -0.70 16 2 C -0.10 -1.23 5.80 -106.25 -0.62 -1.85 16 3 C -0.13 -1.38 9.98 -41.21 -0.41 -1.79 16 4 C -0.23 -2.33 11.23 29.04 0.33 -2.00 16 5 S 0.14 1.59 21.44 -107.50 -2.31 -0.72 16 6 C -0.18 -2.28 5.14 -36.01 -0.19 -2.47 16 7 C 0.25 3.58 2.64 -69.09 -0.18 3.40 16 8 H 0.12 1.90 5.71 -51.93 -0.30 1.60 16 9 C 0.07 0.88 6.84 37.16 0.25 1.13 16 10 O -0.57 -6.73 12.14 -35.23 -0.43 -7.16 16 11 N -0.75 -11.95 5.02 -59.82 -0.30 -12.25 16 12 C 0.67 13.83 8.49 -86.91 -0.74 13.09 16 13 O -0.46 -11.56 11.76 5.31 0.06 -11.50 16 14 N -0.67 -13.70 5.39 -15.79 -0.09 -13.79 16 15 C 0.39 9.61 7.43 -154.99 -1.15 8.45 16 16 C -0.36 -8.16 9.96 -38.89 -0.39 -8.55 16 17 C -0.04 -0.82 10.15 -39.39 -0.40 -1.22 16 18 C -0.31 -7.82 9.83 -38.66 -0.38 -8.20 16 19 C 0.27 7.69 6.55 -85.00 -0.56 7.14 16 20 C -0.43 -11.77 9.14 -37.73 -0.34 -12.12 16 21 H 0.08 2.11 7.85 -52.49 -0.41 1.70 16 22 C 0.06 1.52 5.50 -17.35 -0.10 1.42 16 23 N -0.65 -17.84 8.98 55.55 0.50 -17.34 16 24 Si 0.89 19.20 29.56 -169.99 -5.02 14.18 16 25 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16 26 H -0.28 -5.88 7.11 56.52 0.40 -5.48 16 27 H -0.26 -5.59 7.11 56.52 0.40 -5.18 16 28 N -0.47 -13.30 5.73 -10.26 -0.06 -13.36 16 29 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.07 0.61 8.13 -51.93 -0.42 0.19 16 31 H 0.07 0.87 6.49 -51.93 -0.34 0.53 16 32 H 0.14 1.14 8.06 -52.48 -0.42 0.72 16 33 H 0.16 1.22 8.06 -52.48 -0.42 0.79 16 34 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 35 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.37 2.99 9.12 45.56 0.42 3.41 16 37 H 0.39 5.42 7.88 -40.82 -0.32 5.10 16 38 H 0.40 6.39 8.71 -40.82 -0.36 6.04 16 39 H 0.09 1.77 8.06 -52.49 -0.42 1.35 16 40 H 0.10 1.86 8.06 -52.49 -0.42 1.44 16 41 H 0.10 2.26 8.06 -52.49 -0.42 1.84 16 42 H 0.27 6.93 8.29 -40.82 -0.34 6.60 16 LS Contribution 366.72 15.07 5.53 5.53 Total: -1.00 -33.56 366.72 -10.87 -44.44 By element: Atomic # 1 Polarization: 20.49 SS G_CDS: -4.25 Total: 16.24 kcal Atomic # 6 Polarization: 0.25 SS G_CDS: -4.51 Total: -4.26 kcal Atomic # 7 Polarization: -56.80 SS G_CDS: 0.06 Total: -56.74 kcal Atomic # 8 Polarization: -18.29 SS G_CDS: -0.37 Total: -18.66 kcal Atomic # 14 Polarization: 19.20 SS G_CDS: -5.02 Total: 14.18 kcal Atomic # 16 Polarization: 1.59 SS G_CDS: -2.31 Total: -0.72 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -33.56 -10.87 -44.44 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001366530708.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.916 kcal (2) G-P(sol) polarization free energy of solvation -33.562 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.354 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.873 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.436 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.480 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds