Wall clock time and date at job start Wed Apr 1 2020 05:13:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38423 * 122.53923 * 2 1 4 4 C 1.33386 * 114.91957 * 179.97438 * 3 2 1 5 5 S 1.75877 * 109.59648 * 0.02562 * 4 3 2 6 6 C 1.33389 * 122.53783 * 179.70933 * 2 1 3 7 7 C 1.50695 * 125.20387 * 0.02741 * 6 2 1 8 8 H 1.09001 * 109.47051 * 344.99653 * 7 6 2 9 9 C 1.52995 * 109.47178 * 104.99913 * 7 6 2 10 10 O 1.42901 * 109.47124 * 55.00190 * 9 7 6 11 11 N 1.46497 * 109.46966 * 224.99764 * 7 6 2 12 12 C 1.34782 * 119.99897 * 154.99994 * 11 7 6 13 13 O 1.21565 * 120.00084 * 0.02562 * 12 11 7 14 14 N 1.34777 * 119.99654 * 180.02562 * 12 11 7 15 15 C 1.39247 * 119.99480 * 174.84540 * 14 12 11 16 16 C 1.39686 * 119.57299 * 185.33089 * 15 14 12 17 17 C 1.38651 * 119.49529 * 179.97438 * 16 15 14 18 18 C 1.38347 * 118.66959 * 0.02562 * 17 16 15 19 19 C 1.40576 * 119.13228 * 359.97438 * 18 17 16 20 20 C 1.41331 * 119.78533 * 180.02562 * 19 18 17 21 21 H 1.07999 * 120.00186 * 359.97438 * 20 19 18 22 22 C 1.40030 * 119.99831 * 180.02562 * 20 19 18 23 23 N 1.30737 * 120.00019 * 359.97438 * 22 20 19 24 24 Si 1.86801 * 119.99888 * 179.97438 * 22 20 19 25 25 H 1.48505 * 109.46999 * 89.99913 * 24 22 20 26 26 H 1.48498 * 109.47161 * 209.99553 * 24 22 20 27 27 H 1.48496 * 109.47600 * 329.99990 * 24 22 20 28 28 N 1.31903 * 119.57726 * 5.05696 * 15 14 12 29 29 H 1.09001 * 109.47335 * 90.02060 * 1 2 3 30 30 H 1.09001 * 109.47383 * 330.02232 * 1 2 3 31 31 H 1.08998 * 109.47689 * 210.02529 * 1 2 3 32 32 H 1.08003 * 122.54193 * 359.95784 * 3 2 1 33 33 H 1.08010 * 125.19943 * 179.97438 * 4 3 2 34 34 H 1.09000 * 109.47585 * 174.99771 * 9 7 6 35 35 H 1.09005 * 109.47455 * 295.00239 * 9 7 6 36 36 H 0.96699 * 114.00193 * 180.02562 * 10 9 7 37 37 H 0.97000 * 120.00149 * 335.00610 * 11 7 6 38 38 H 0.97001 * 120.00634 * 354.84500 * 14 12 11 39 39 H 1.08000 * 120.25443 * 359.95875 * 16 15 14 40 40 H 1.08001 * 120.66232 * 180.02562 * 17 16 15 41 41 H 1.07997 * 120.43565 * 179.97438 * 18 17 16 42 42 H 0.97005 * 120.00434 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2515 1.1669 0.0000 4 6 3.5736 0.9901 0.0005 5 16 3.9386 -0.7304 0.0004 6 6 2.2244 -1.1245 0.0057 7 6 1.6536 -2.5192 0.0122 8 1 0.5972 -2.4781 0.2776 9 6 1.8065 -3.1393 -1.3781 10 8 3.1783 -3.0869 -1.7748 11 7 2.3722 -3.3363 0.9930 12 6 1.7713 -4.4082 1.5467 13 8 0.6333 -4.6972 1.2319 14 7 2.4323 -5.1596 2.4495 15 6 1.7773 -6.2016 3.1010 16 6 2.4351 -6.9027 4.1144 17 6 1.7813 -7.9396 4.7623 18 6 0.4880 -8.2498 4.3813 19 6 -0.1197 -7.5068 3.3542 20 6 -1.4405 -7.8115 2.9543 21 1 -1.9796 -8.6132 3.4372 22 6 -2.0499 -7.0747 1.9313 23 7 -1.3973 -6.1045 1.3465 24 14 -3.7955 -7.4779 1.4023 25 1 -4.7539 -6.6803 2.2090 26 1 -3.9654 -7.1490 -0.0358 27 1 -4.0551 -8.9247 1.6133 28 7 0.5419 -6.5103 2.7569 29 1 -0.3634 -0.0004 -1.0277 30 1 -0.3634 0.8902 0.5135 31 1 -0.3634 -0.8897 0.5142 32 1 1.7965 2.1464 -0.0007 33 1 4.3077 1.7823 0.0002 34 1 1.4754 -4.1774 -1.3514 35 1 1.2001 -2.5828 -2.0929 36 1 3.3497 -3.4634 -2.6488 37 1 3.2804 -3.1059 1.2441 38 1 3.3641 -4.9747 2.6454 39 1 3.4453 -6.6394 4.3909 40 1 2.2718 -8.4940 5.5488 41 1 -0.0478 -9.0522 4.8665 42 1 -1.8192 -5.5943 0.6376 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001366530708.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:13:29 Heat of formation + Delta-G solvation = -0.580014 kcal Electronic energy + Delta-G solvation = -28122.010738 eV Core-core repulsion = 24194.225488 eV Total energy + Delta-G solvation = -3927.785249 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.109 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.27080 -39.96599 -39.15085 -37.79304 -35.98435 -35.33645 -34.81807 -32.34041 -32.11264 -30.98782 -29.86294 -27.70057 -27.38731 -24.62621 -23.86787 -23.19021 -22.45773 -21.41189 -20.14933 -19.46844 -18.72515 -18.24449 -18.10636 -17.73002 -16.59648 -16.32417 -16.26026 -16.14504 -16.01068 -15.57001 -15.20945 -15.08128 -14.69032 -14.60757 -14.35487 -14.00911 -13.97973 -13.64519 -13.41668 -13.04012 -12.87668 -12.72385 -12.70162 -12.63088 -12.53267 -12.33434 -12.29613 -11.74790 -11.52507 -11.49634 -11.05018 -10.85562 -10.82520 -9.98487 -9.85031 -9.53462 -9.13932 -9.09201 -8.77765 -7.99876 -6.38439 0.06891 0.76162 0.98428 1.18641 1.29956 1.41219 1.52711 1.55555 1.66329 1.91992 2.28837 2.53940 3.05380 3.32064 3.34408 3.62339 4.08132 4.09178 4.14170 4.36122 4.39286 4.45799 4.53593 4.58159 4.68627 4.72376 4.78001 4.81175 4.88426 4.98461 5.07240 5.13247 5.17853 5.30210 5.51624 5.55817 5.67896 5.69575 5.85511 5.94022 6.02590 6.30745 6.43057 6.83496 6.84394 7.09186 7.19524 7.97394 8.39246 8.60996 Molecular weight = 347.11amu Principal moments of inertia in cm(-1) A = 0.012634 B = 0.003447 C = 0.002963 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2215.755337 B = 8120.214949 C = 9446.229485 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C -0.103 4.103 3 C -0.142 4.142 4 C -0.218 4.218 5 S 0.137 5.863 6 C -0.203 4.203 7 C 0.245 3.755 8 H 0.094 0.906 9 C 0.078 3.922 10 O -0.568 6.568 11 N -0.729 5.729 12 C 0.663 3.337 13 O -0.508 6.508 14 N -0.663 5.663 15 C 0.366 3.634 16 C -0.347 4.347 17 C -0.033 4.033 18 C -0.331 4.331 19 C 0.237 3.763 20 C -0.466 4.466 21 H 0.084 0.916 22 C 0.012 3.988 23 N -0.682 5.682 24 Si 0.972 3.028 25 H -0.267 1.267 26 H -0.272 1.272 27 H -0.257 1.257 28 N -0.504 5.504 29 H 0.081 0.919 30 H 0.082 0.918 31 H 0.050 0.950 32 H 0.160 0.840 33 H 0.189 0.811 34 H 0.033 0.967 35 H 0.068 0.932 36 H 0.393 0.607 37 H 0.397 0.603 38 H 0.415 0.585 39 H 0.130 0.870 40 H 0.137 0.863 41 H 0.104 0.896 42 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.661 15.187 -7.031 19.324 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.117 4.117 3 C -0.172 4.172 4 C -0.353 4.353 5 S 0.403 5.597 6 C -0.321 4.321 7 C 0.138 3.862 8 H 0.111 0.889 9 C -0.002 4.002 10 O -0.376 6.376 11 N -0.389 5.389 12 C 0.361 3.639 13 O -0.375 6.375 14 N -0.313 5.313 15 C 0.126 3.874 16 C -0.373 4.373 17 C -0.057 4.057 18 C -0.354 4.354 19 C 0.112 3.888 20 C -0.497 4.497 21 H 0.103 0.897 22 C -0.214 4.214 23 N -0.301 5.301 24 Si 0.793 3.207 25 H -0.192 1.192 26 H -0.197 1.197 27 H -0.181 1.181 28 N -0.224 5.224 29 H 0.100 0.900 30 H 0.101 0.899 31 H 0.069 0.931 32 H 0.177 0.823 33 H 0.206 0.794 34 H 0.051 0.949 35 H 0.086 0.914 36 H 0.242 0.758 37 H 0.232 0.768 38 H 0.252 0.748 39 H 0.147 0.853 40 H 0.155 0.845 41 H 0.122 0.878 42 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 9.580 15.030 -7.611 19.380 hybrid contribution -0.819 -0.100 0.171 0.843 sum 8.761 14.930 -7.440 18.842 Atomic orbital electron populations 1.20610 0.89386 1.02867 1.02989 1.19102 0.98050 0.91775 1.02766 1.20201 0.93032 0.99414 1.04537 1.26072 1.00299 0.99782 1.09175 1.84215 1.03916 0.99947 1.71599 1.24105 0.97787 0.97117 1.13119 1.19075 0.96166 0.84030 0.86959 0.88866 1.22396 0.83950 0.98860 0.94979 1.86409 1.24992 1.85307 1.40890 1.45123 1.18123 1.29065 1.46560 1.16615 0.85696 0.80962 0.80637 1.91368 1.15703 1.69153 1.61301 1.42410 1.14659 1.31780 1.42415 1.18816 0.91086 0.87664 0.89800 1.20905 1.02847 1.06876 1.06676 1.21011 0.93351 0.94643 0.96743 1.21806 0.98560 1.07912 1.07132 1.18876 0.93671 0.87583 0.88675 1.19882 0.97463 1.15607 1.16703 0.89748 1.27004 1.03312 0.94769 0.96333 1.70550 1.35516 1.10552 1.13505 0.85372 0.77702 0.79750 0.77856 1.19181 1.19730 1.18116 1.68648 1.05742 1.18505 1.29466 0.90042 0.89920 0.93071 0.82288 0.79418 0.94896 0.91420 0.75785 0.76827 0.74828 0.85254 0.84530 0.87782 0.91982 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.06 9.82 71.23 0.70 -1.36 16 2 C -0.10 -2.34 5.80 -20.92 -0.12 -2.46 16 3 C -0.14 -2.61 9.98 21.22 0.21 -2.40 16 4 C -0.22 -3.75 11.23 66.72 0.75 -3.00 16 5 S 0.14 2.87 21.44 -56.49 -1.21 1.66 16 6 C -0.20 -5.11 5.14 24.59 0.13 -4.98 16 7 C 0.24 7.34 2.64 44.24 0.12 7.46 16 8 H 0.09 3.25 5.71 -2.39 -0.01 3.23 16 9 C 0.08 2.13 6.84 71.98 0.49 2.62 16 10 O -0.57 -13.12 12.14 -148.98 -1.81 -14.92 16 11 N -0.73 -23.66 5.02 -461.45 -2.31 -25.97 16 12 C 0.66 28.29 8.49 179.05 1.52 29.81 16 13 O -0.51 -26.68 11.76 -3.92 -0.05 -26.72 16 14 N -0.66 -27.07 5.39 -322.13 -1.74 -28.81 16 15 C 0.37 18.27 7.43 133.26 0.99 19.26 16 16 C -0.35 -15.25 9.96 22.72 0.23 -15.03 16 17 C -0.03 -1.48 10.15 22.39 0.23 -1.25 16 18 C -0.33 -17.04 9.83 22.87 0.22 -16.81 16 19 C 0.24 13.94 6.55 40.19 0.26 14.20 16 20 C -0.47 -26.84 9.14 23.47 0.21 -26.63 16 21 H 0.08 4.57 7.85 -2.91 -0.02 4.54 16 22 C 0.01 0.64 5.50 85.29 0.47 1.11 16 23 N -0.68 -39.40 8.98 21.84 0.20 -39.21 16 24 Si 0.97 40.88 29.56 68.60 2.03 42.90 16 25 H -0.27 -10.89 7.11 99.48 0.71 -10.18 16 26 H -0.27 -11.02 7.11 99.48 0.71 -10.32 16 27 H -0.26 -10.40 7.11 99.48 0.71 -9.69 16 28 N -0.50 -29.51 5.73 -186.36 -1.07 -30.58 16 29 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 30 H 0.08 1.41 8.13 -2.39 -0.02 1.39 16 31 H 0.05 1.28 6.49 -2.39 -0.02 1.27 16 32 H 0.16 2.14 8.06 -2.91 -0.02 2.11 16 33 H 0.19 2.10 8.06 -2.91 -0.02 2.08 16 34 H 0.03 1.10 8.14 -2.39 -0.02 1.08 16 35 H 0.07 1.59 8.14 -2.38 -0.02 1.57 16 36 H 0.39 5.86 9.12 -74.06 -0.68 5.18 16 37 H 0.40 10.97 7.88 -92.71 -0.73 10.24 16 38 H 0.42 12.93 8.71 -92.71 -0.81 12.13 16 39 H 0.13 4.59 8.06 -2.91 -0.02 4.57 16 40 H 0.14 4.86 8.06 -2.91 -0.02 4.84 16 41 H 0.10 4.99 8.06 -2.91 -0.02 4.96 16 42 H 0.27 14.60 8.29 -92.70 -0.77 13.83 16 Total: -1.00 -76.18 366.72 -0.66 -76.84 By element: Atomic # 1 Polarization: 45.39 SS G_CDS: -1.11 Total: 44.29 kcal Atomic # 6 Polarization: -5.88 SS G_CDS: 6.41 Total: 0.53 kcal Atomic # 7 Polarization: -119.65 SS G_CDS: -4.92 Total: -124.57 kcal Atomic # 8 Polarization: -39.79 SS G_CDS: -1.85 Total: -41.65 kcal Atomic # 14 Polarization: 40.88 SS G_CDS: 2.03 Total: 42.90 kcal Atomic # 16 Polarization: 2.87 SS G_CDS: -1.21 Total: 1.66 kcal Total: -76.18 -0.66 -76.84 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001366530708.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.257 kcal (2) G-P(sol) polarization free energy of solvation -76.176 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.081 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.661 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.837 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.580 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds