Wall clock time and date at job start Wed Apr 1 2020 04:31:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86801 * 119.99843 * 2 1 4 4 H 1.48499 * 109.47208 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47321 * 300.00359 * 3 2 1 6 6 H 1.48501 * 109.46941 * 60.00589 * 3 2 1 7 7 C 1.38813 * 120.00433 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00222 * 179.97438 * 7 2 1 9 9 N 1.36939 * 119.99778 * 359.97438 * 7 2 1 10 10 C 1.46504 * 120.00057 * 180.02562 * 9 7 2 11 11 H 1.08997 * 109.46771 * 324.99545 * 10 9 7 12 12 C 1.52997 * 109.46848 * 204.99992 * 10 9 7 13 13 N 1.46499 * 109.47555 * 55.00180 * 12 10 9 14 14 C 1.34777 * 120.00199 * 180.02562 * 13 12 10 15 15 O 1.21493 * 119.99885 * 359.97438 * 14 13 12 16 16 C 1.48351 * 120.00039 * 180.27215 * 14 13 12 17 17 C 1.41694 * 126.81345 * 179.42856 * 16 14 13 18 18 C 1.37161 * 103.80138 * 179.89464 * 17 16 14 19 19 C 1.47020 * 126.85973 * 180.12499 * 18 17 16 20 20 C 1.36209 * 125.33394 * 179.97438 * 19 18 17 21 21 C 1.37708 * 114.44371 * 179.78773 * 20 19 18 22 22 C 1.33741 * 115.19369 * 0.49761 * 21 20 19 23 23 S 1.75825 * 109.95747 * 359.73192 * 22 21 20 24 24 O 1.34567 * 106.27824 * 0.36703 * 18 17 16 25 25 N 1.20875 * 111.69539 * 359.75363 * 24 18 17 26 26 C 1.53000 * 109.46808 * 84.99941 * 10 9 7 27 27 C 1.52991 * 117.50094 * 8.74904 * 26 10 9 28 28 C 1.52992 * 117.49818 * 300.08219 * 26 10 9 29 29 H 0.97003 * 120.00482 * 359.97438 * 1 2 3 30 30 H 0.97003 * 119.99767 * 359.97438 * 9 7 2 31 31 H 1.08998 * 109.47382 * 294.99742 * 12 10 9 32 32 H 1.08997 * 109.46954 * 174.99814 * 12 10 9 33 33 H 0.97001 * 120.00074 * 359.97438 * 13 12 10 34 34 H 1.08005 * 128.10110 * 0.03382 * 17 16 14 35 35 H 1.07998 * 122.77362 * 359.97438 * 20 19 18 36 36 H 1.08002 * 122.40798 * 180.22835 * 21 20 19 37 37 H 1.08001 * 125.02124 * 179.72409 * 22 21 20 38 38 H 1.09001 * 115.54558 * 154.42168 * 26 10 9 39 39 H 1.09002 * 117.49992 * 359.97438 * 27 26 10 40 40 H 1.08999 * 117.49722 * 145.02193 * 27 26 10 41 41 H 1.08998 * 117.50109 * 214.98039 * 28 26 10 42 42 H 1.09000 * 117.50241 * 0.02562 * 28 26 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3465 -0.0006 5 1 1.8913 2.3965 -1.2124 6 1 1.8914 2.3964 1.2126 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3257 -2.3880 -0.0005 10 6 2.0582 -3.6568 -0.0005 11 1 2.9688 -3.5505 -0.5900 12 6 1.1810 -4.7521 -0.6102 13 7 0.7344 -4.3355 -1.9418 14 6 -0.0555 -5.1473 -2.6722 15 8 -0.3967 -6.2248 -2.2266 16 6 -0.5028 -4.7280 -4.0231 17 6 -1.3198 -5.4670 -4.9143 18 6 -1.4373 -4.6464 -6.0072 19 6 -2.1886 -4.9223 -7.2404 20 6 -2.2848 -4.0828 -8.3087 21 6 -3.0438 -4.5697 -9.3495 22 6 -3.5754 -5.7804 -9.1488 23 16 -3.1101 -6.3850 -7.5647 24 8 -0.7231 -3.5408 -5.7272 25 7 -0.2156 -3.6021 -4.6319 26 6 2.4221 -4.0355 1.4365 27 6 1.8134 -3.1986 2.5633 28 6 3.2996 -3.0602 2.2235 29 1 -0.4851 0.8400 0.0004 30 1 0.3556 -2.3880 0.0002 31 1 0.3135 -4.9201 0.0280 32 1 1.7559 -5.6745 -0.6919 33 1 1.0065 -3.4751 -2.2975 34 1 -1.7511 -6.4461 -4.7667 35 1 -1.8031 -3.1167 -8.3382 36 1 -3.2022 -4.0120 -10.2607 37 1 -4.1986 -6.3085 -9.8552 38 1 2.5634 -5.1006 1.6205 39 1 1.1541 -2.3778 2.2810 40 1 1.5547 -3.7129 3.4889 41 1 4.0179 -3.4834 2.9256 42 1 3.6174 -2.1484 1.7176 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001566716868.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:31:50 Heat of formation + Delta-G solvation = 105.081173 kcal Electronic energy + Delta-G solvation = -26783.546940 eV Core-core repulsion = 22860.343503 eV Total energy + Delta-G solvation = -3923.203436 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.109 amu Computer time = 2.32 seconds Orbital eigenvalues (eV) -45.09587 -39.42727 -38.10175 -37.63668 -34.62117 -34.14227 -33.32336 -32.92927 -30.85235 -28.97472 -28.29336 -25.37036 -24.65404 -23.52379 -22.97758 -22.29438 -21.50211 -20.64033 -19.67364 -18.95679 -18.62550 -17.88073 -17.32457 -16.84262 -16.58873 -15.77843 -15.53973 -15.29623 -14.79601 -14.54710 -14.31924 -13.86332 -13.67106 -13.60587 -13.54246 -13.13855 -12.97868 -12.91489 -12.67918 -12.13422 -11.64229 -11.34981 -11.25308 -11.19027 -10.89782 -10.86001 -10.60901 -10.54137 -10.50038 -10.15840 -10.08244 -9.68605 -9.48806 -9.19617 -8.99684 -8.93773 -8.78185 -8.59113 -7.07832 -5.83505 -3.14073 0.01326 0.93698 1.22558 1.48988 1.66130 2.47606 2.85957 3.13973 3.30700 3.39534 3.45669 3.47644 3.94081 4.25183 4.49128 4.62486 4.62677 4.75187 4.98918 5.03167 5.15381 5.24662 5.32682 5.46827 5.53301 5.58438 5.66401 5.72179 5.82610 5.84014 5.93309 5.97163 6.01560 6.02375 6.37548 6.39298 6.60773 6.67754 6.80001 6.98779 7.27047 7.65596 7.66110 7.96259 8.30483 8.33441 9.45584 9.98275 10.34245 11.37969 Molecular weight = 347.11amu Principal moments of inertia in cm(-1) A = 0.014028 B = 0.002427 C = 0.002125 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1995.482381 B =11533.075272 C =13171.587334 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C -0.007 4.007 3 Si 0.903 3.097 4 H -0.280 1.280 5 H -0.292 1.292 6 H -0.292 1.292 7 C -0.240 4.240 8 H 0.072 0.928 9 N -0.717 5.717 10 C 0.191 3.809 11 H 0.058 0.942 12 C 0.118 3.882 13 N -0.692 5.692 14 C 0.594 3.406 15 O -0.535 6.535 16 C -0.015 4.015 17 C -0.166 4.166 18 C 0.031 3.969 19 C -0.137 4.137 20 C -0.101 4.101 21 C -0.134 4.134 22 C -0.211 4.211 23 S 0.172 5.828 24 O 0.139 5.861 25 N -0.314 5.314 26 C -0.178 4.178 27 C -0.163 4.163 28 C -0.175 4.175 29 H 0.255 0.745 30 H 0.386 0.614 31 H 0.070 0.930 32 H 0.069 0.931 33 H 0.418 0.582 34 H 0.182 0.818 35 H 0.152 0.848 36 H 0.148 0.852 37 H 0.171 0.829 38 H 0.086 0.914 39 H 0.119 0.881 40 H 0.069 0.931 41 H 0.072 0.928 42 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.146 -12.993 -16.553 21.663 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.204 4.204 3 Si 0.734 3.266 4 H -0.206 1.206 5 H -0.219 1.219 6 H -0.219 1.219 7 C -0.371 4.371 8 H 0.090 0.910 9 N -0.359 5.359 10 C 0.080 3.920 11 H 0.076 0.924 12 C -0.006 4.006 13 N -0.344 5.344 14 C 0.377 3.623 15 O -0.412 6.412 16 C -0.173 4.173 17 C -0.189 4.189 18 C -0.034 4.034 19 C -0.255 4.255 20 C -0.134 4.134 21 C -0.164 4.164 22 C -0.347 4.347 23 S 0.437 5.563 24 O 0.060 5.940 25 N -0.011 5.011 26 C -0.200 4.200 27 C -0.200 4.200 28 C -0.212 4.212 29 H 0.065 0.935 30 H 0.221 0.779 31 H 0.089 0.911 32 H 0.087 0.913 33 H 0.255 0.745 34 H 0.199 0.801 35 H 0.169 0.831 36 H 0.165 0.835 37 H 0.188 0.812 38 H 0.105 0.895 39 H 0.137 0.863 40 H 0.088 0.912 41 H 0.090 0.910 42 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -4.795 -13.900 -14.981 20.991 hybrid contribution 0.131 2.003 -0.861 2.184 sum -4.664 -11.897 -15.842 20.354 Atomic orbital electron populations 1.69664 1.05049 1.25653 1.57065 1.24718 0.95417 0.97599 1.02647 0.86191 0.78849 0.84392 0.77173 1.20573 1.21896 1.21915 1.19190 0.90916 0.83726 1.43292 0.90977 1.42482 1.05840 0.99498 1.88102 1.20000 0.94091 0.85996 0.91889 0.92371 1.21715 0.99143 0.97803 0.81969 1.45884 1.48912 1.21731 1.17842 1.16816 0.79133 0.84376 0.81968 1.90767 1.57389 1.22125 1.70893 1.23367 1.02741 0.92354 0.98871 1.22582 1.02408 1.02476 0.91473 1.21251 0.98859 0.88220 0.95052 1.21795 1.07174 1.01053 0.95463 1.20776 0.99949 1.00901 0.91749 1.20047 0.99699 0.96041 1.00654 1.25960 1.07529 1.00650 1.00589 1.84314 1.44501 1.15907 1.11580 1.84964 1.47205 1.35613 1.26240 1.74291 1.14500 1.19217 0.93123 1.23050 1.06115 0.95393 0.95399 1.22919 0.96730 1.03505 0.96821 1.22857 0.93495 1.01875 1.02981 0.93490 0.77938 0.91139 0.91303 0.74477 0.80064 0.83057 0.83486 0.81169 0.89541 0.86317 0.91242 0.90974 0.87889 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 39. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -26.75 13.06 55.49 0.72 -26.02 16 2 C -0.01 -0.19 5.50 -17.43 -0.10 -0.29 16 3 Si 0.90 21.74 29.55 -169.99 -5.02 16.71 16 4 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 5 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 6 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 7 C -0.24 -6.09 8.15 -15.06 -0.12 -6.22 16 8 H 0.07 1.81 6.91 -52.49 -0.36 1.45 16 9 N -0.72 -16.27 3.08 -53.42 -0.16 -16.44 16 10 C 0.19 3.56 2.86 -67.93 -0.19 3.37 16 11 H 0.06 1.11 8.08 -51.93 -0.42 0.69 16 12 C 0.12 2.02 5.22 -4.04 -0.02 2.00 16 13 N -0.69 -12.34 5.39 -61.09 -0.33 -12.67 16 14 C 0.59 10.63 7.85 -12.10 -0.09 10.54 16 15 O -0.54 -10.43 16.94 5.37 0.09 -10.34 16 16 C -0.02 -0.25 7.17 -82.66 -0.59 -0.84 16 17 C -0.17 -2.21 10.77 -38.65 -0.42 -2.63 16 18 C 0.03 0.38 7.28 -36.42 -0.26 0.11 16 19 C -0.14 -1.35 6.45 -36.75 -0.24 -1.58 16 20 C -0.10 -0.84 10.17 -40.51 -0.41 -1.26 16 21 C -0.13 -0.87 10.15 -41.35 -0.42 -1.29 16 22 C -0.21 -1.27 11.21 29.15 0.33 -0.94 16 23 S 0.17 1.31 23.11 -107.50 -2.48 -1.17 16 24 O 0.14 1.98 11.21 15.76 0.18 2.16 16 25 N -0.31 -5.16 11.81 33.36 0.39 -4.76 16 26 C -0.18 -3.10 5.70 -90.63 -0.52 -3.61 16 27 C -0.16 -3.05 9.74 -26.69 -0.26 -3.31 16 28 C -0.18 -3.13 9.87 -26.69 -0.26 -3.39 16 29 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 30 H 0.39 9.67 7.80 -40.82 -0.32 9.35 16 31 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 32 H 0.07 1.08 8.14 -51.93 -0.42 0.65 16 33 H 0.42 7.89 7.89 -40.82 -0.32 7.57 16 34 H 0.18 2.06 8.06 -52.48 -0.42 1.64 16 35 H 0.15 1.11 8.06 -52.49 -0.42 0.68 16 36 H 0.15 0.62 8.06 -52.49 -0.42 0.20 16 37 H 0.17 0.58 8.06 -52.49 -0.42 0.16 16 38 H 0.09 1.33 8.11 -51.93 -0.42 0.91 16 39 H 0.12 2.67 6.68 -51.93 -0.35 2.33 16 40 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 41 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 42 H 0.10 2.06 6.22 -51.93 -0.32 1.74 16 LS Contribution 378.37 15.07 5.70 5.70 Total: -1.00 -29.79 378.37 -9.53 -39.32 By element: Atomic # 1 Polarization: 21.90 SS G_CDS: -5.03 Total: 16.87 kcal Atomic # 6 Polarization: -5.77 SS G_CDS: -3.59 Total: -9.35 kcal Atomic # 7 Polarization: -60.52 SS G_CDS: 0.63 Total: -59.90 kcal Atomic # 8 Polarization: -8.45 SS G_CDS: 0.27 Total: -8.18 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.02 Total: 16.71 kcal Atomic # 16 Polarization: 1.31 SS G_CDS: -2.48 Total: -1.17 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -29.79 -9.53 -39.32 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001566716868.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.399 kcal (2) G-P(sol) polarization free energy of solvation -29.787 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 114.611 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.530 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.318 kcal (6) G-S(sol) free energy of system = (1) + (5) 105.081 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.33 seconds