Wall clock time and date at job start Wed Apr 1 2020 04:31:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86801 * 119.99843 * 2 1 4 4 H 1.48499 * 109.47208 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47321 * 300.00359 * 3 2 1 6 6 H 1.48501 * 109.46941 * 60.00589 * 3 2 1 7 7 C 1.38813 * 120.00433 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00222 * 179.97438 * 7 2 1 9 9 N 1.36939 * 119.99778 * 359.97438 * 7 2 1 10 10 C 1.46504 * 120.00057 * 180.02562 * 9 7 2 11 11 H 1.08997 * 109.46771 * 324.99545 * 10 9 7 12 12 C 1.52997 * 109.46848 * 204.99992 * 10 9 7 13 13 N 1.46499 * 109.47555 * 55.00180 * 12 10 9 14 14 C 1.34777 * 120.00199 * 180.02562 * 13 12 10 15 15 O 1.21493 * 119.99885 * 359.97438 * 14 13 12 16 16 C 1.48351 * 120.00039 * 180.27215 * 14 13 12 17 17 C 1.41694 * 126.81345 * 179.42856 * 16 14 13 18 18 C 1.37161 * 103.80138 * 179.89464 * 17 16 14 19 19 C 1.47020 * 126.85973 * 180.12499 * 18 17 16 20 20 C 1.36209 * 125.33394 * 179.97438 * 19 18 17 21 21 C 1.37708 * 114.44371 * 179.78773 * 20 19 18 22 22 C 1.33741 * 115.19369 * 0.49761 * 21 20 19 23 23 S 1.75825 * 109.95747 * 359.73192 * 22 21 20 24 24 O 1.34567 * 106.27824 * 0.36703 * 18 17 16 25 25 N 1.20875 * 111.69539 * 359.75363 * 24 18 17 26 26 C 1.53000 * 109.46808 * 84.99941 * 10 9 7 27 27 C 1.52991 * 117.50094 * 8.74904 * 26 10 9 28 28 C 1.52992 * 117.49818 * 300.08219 * 26 10 9 29 29 H 0.97003 * 120.00482 * 359.97438 * 1 2 3 30 30 H 0.97003 * 119.99767 * 359.97438 * 9 7 2 31 31 H 1.08998 * 109.47382 * 294.99742 * 12 10 9 32 32 H 1.08997 * 109.46954 * 174.99814 * 12 10 9 33 33 H 0.97001 * 120.00074 * 359.97438 * 13 12 10 34 34 H 1.08005 * 128.10110 * 0.03382 * 17 16 14 35 35 H 1.07998 * 122.77362 * 359.97438 * 20 19 18 36 36 H 1.08002 * 122.40798 * 180.22835 * 21 20 19 37 37 H 1.08001 * 125.02124 * 179.72409 * 22 21 20 38 38 H 1.09001 * 115.54558 * 154.42168 * 26 10 9 39 39 H 1.09002 * 117.49992 * 359.97438 * 27 26 10 40 40 H 1.08999 * 117.49722 * 145.02193 * 27 26 10 41 41 H 1.08998 * 117.50109 * 214.98039 * 28 26 10 42 42 H 1.09000 * 117.50241 * 0.02562 * 28 26 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3465 -0.0006 5 1 1.8913 2.3965 -1.2124 6 1 1.8914 2.3964 1.2126 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3257 -2.3880 -0.0005 10 6 2.0582 -3.6568 -0.0005 11 1 2.9688 -3.5505 -0.5900 12 6 1.1810 -4.7521 -0.6102 13 7 0.7344 -4.3355 -1.9418 14 6 -0.0555 -5.1473 -2.6722 15 8 -0.3967 -6.2248 -2.2266 16 6 -0.5028 -4.7280 -4.0231 17 6 -1.3198 -5.4670 -4.9143 18 6 -1.4373 -4.6464 -6.0072 19 6 -2.1886 -4.9223 -7.2404 20 6 -2.2848 -4.0828 -8.3087 21 6 -3.0438 -4.5697 -9.3495 22 6 -3.5754 -5.7804 -9.1488 23 16 -3.1101 -6.3850 -7.5647 24 8 -0.7231 -3.5408 -5.7272 25 7 -0.2156 -3.6021 -4.6319 26 6 2.4221 -4.0355 1.4365 27 6 1.8134 -3.1986 2.5633 28 6 3.2996 -3.0602 2.2235 29 1 -0.4851 0.8400 0.0004 30 1 0.3556 -2.3880 0.0002 31 1 0.3135 -4.9201 0.0280 32 1 1.7559 -5.6745 -0.6919 33 1 1.0065 -3.4751 -2.2975 34 1 -1.7511 -6.4461 -4.7667 35 1 -1.8031 -3.1167 -8.3382 36 1 -3.2022 -4.0120 -10.2607 37 1 -4.1986 -6.3085 -9.8552 38 1 2.5634 -5.1006 1.6205 39 1 1.1541 -2.3778 2.2810 40 1 1.5547 -3.7129 3.4889 41 1 4.0179 -3.4834 2.9256 42 1 3.6174 -2.1484 1.7176 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001566716868.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:31:49 Heat of formation + Delta-G solvation = 87.569641 kcal Electronic energy + Delta-G solvation = -26784.306297 eV Core-core repulsion = 22860.343503 eV Total energy + Delta-G solvation = -3923.962793 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.109 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -46.23356 -40.86418 -39.18453 -38.69648 -36.07399 -35.29166 -35.12013 -33.95982 -32.60571 -30.04243 -29.65652 -26.63825 -25.61860 -25.20922 -24.17984 -23.58016 -22.94190 -21.73327 -20.91509 -20.21310 -19.43075 -19.18358 -19.03373 -18.04923 -17.62564 -17.05021 -16.86556 -16.38992 -16.32877 -16.16189 -15.60500 -15.33102 -15.12113 -14.69081 -14.58084 -14.34293 -14.19981 -13.78695 -13.58301 -13.37654 -13.02079 -12.91955 -12.71605 -12.66224 -12.58776 -12.12487 -11.94981 -11.82140 -11.72261 -11.66474 -11.55361 -11.43706 -11.06346 -10.88231 -10.64391 -10.22628 -9.51111 -9.34696 -9.02839 -7.91225 -5.19134 -0.73265 0.03664 0.29440 0.82017 0.94371 1.45879 1.47750 1.55412 1.77578 1.83244 1.94800 1.98373 2.55733 2.75645 3.11824 3.25675 3.44486 3.67933 3.81958 3.91982 3.98990 4.05089 4.22043 4.25969 4.30938 4.45573 4.47894 4.55461 4.59622 4.62598 4.66285 4.86445 4.96776 5.06961 5.14748 5.15701 5.27164 5.32322 5.42879 5.45049 5.64787 5.68527 6.24134 6.28573 6.77686 6.91533 7.36797 8.06883 8.31764 9.31450 Molecular weight = 347.11amu Principal moments of inertia in cm(-1) A = 0.014028 B = 0.002427 C = 0.002125 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1995.482381 B =11533.075272 C =13171.587334 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.965 5.965 2 C -0.069 4.069 3 Si 0.958 3.042 4 H -0.267 1.267 5 H -0.300 1.300 6 H -0.300 1.300 7 C -0.217 4.217 8 H 0.077 0.923 9 N -0.722 5.722 10 C 0.190 3.810 11 H 0.060 0.940 12 C 0.125 3.875 13 N -0.695 5.695 14 C 0.595 3.405 15 O -0.554 6.554 16 C -0.034 4.034 17 C -0.177 4.177 18 C 0.052 3.948 19 C -0.181 4.181 20 C -0.090 4.090 21 C -0.147 4.147 22 C -0.188 4.188 23 S 0.175 5.825 24 O 0.139 5.861 25 N -0.343 5.343 26 C -0.167 4.167 27 C -0.173 4.173 28 C -0.170 4.170 29 H 0.247 0.753 30 H 0.373 0.627 31 H 0.062 0.938 32 H 0.092 0.908 33 H 0.412 0.588 34 H 0.197 0.803 35 H 0.156 0.844 36 H 0.175 0.825 37 H 0.203 0.797 38 H 0.120 0.880 39 H 0.076 0.924 40 H 0.093 0.907 41 H 0.103 0.897 42 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.864 -14.649 -18.187 23.855 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.616 5.616 2 C -0.261 4.261 3 Si 0.789 3.211 4 H -0.191 1.191 5 H -0.228 1.228 6 H -0.228 1.228 7 C -0.349 4.349 8 H 0.095 0.905 9 N -0.362 5.362 10 C 0.081 3.919 11 H 0.078 0.922 12 C 0.001 3.999 13 N -0.345 5.345 14 C 0.379 3.621 15 O -0.432 6.432 16 C -0.191 4.191 17 C -0.200 4.200 18 C -0.012 4.012 19 C -0.299 4.299 20 C -0.123 4.123 21 C -0.175 4.175 22 C -0.324 4.324 23 S 0.440 5.560 24 O 0.060 5.940 25 N -0.041 5.041 26 C -0.188 4.188 27 C -0.210 4.210 28 C -0.207 4.207 29 H 0.056 0.944 30 H 0.205 0.795 31 H 0.080 0.920 32 H 0.110 0.890 33 H 0.248 0.752 34 H 0.214 0.786 35 H 0.174 0.826 36 H 0.192 0.808 37 H 0.220 0.780 38 H 0.138 0.862 39 H 0.094 0.906 40 H 0.111 0.889 41 H 0.122 0.878 42 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -4.458 -15.592 -16.604 23.209 hybrid contribution -0.013 2.422 -0.528 2.479 sum -4.471 -13.170 -17.131 22.067 Atomic orbital electron populations 1.69808 1.06385 1.25472 1.59918 1.25346 0.96032 1.00388 1.04342 0.85295 0.78502 0.81145 0.76178 1.19099 1.22755 1.22762 1.19445 0.91090 0.84524 1.39825 0.90525 1.42544 1.05243 1.00402 1.87976 1.20163 0.93888 0.84720 0.93130 0.92232 1.21680 0.98739 0.97954 0.81483 1.45917 1.49056 1.21448 1.18075 1.16998 0.78626 0.84007 0.82487 1.90739 1.58099 1.22799 1.71579 1.23305 1.03998 0.93189 0.98617 1.22721 1.02790 1.03268 0.91268 1.21629 0.97269 0.86797 0.95551 1.21886 1.09518 1.03169 0.95291 1.21093 0.98911 1.00728 0.91587 1.20313 0.99544 0.96552 1.01133 1.26448 1.06052 1.00188 0.99715 1.84334 1.43950 1.14912 1.12826 1.84907 1.47276 1.36371 1.25482 1.74272 1.15935 1.19809 0.94076 1.23019 1.05125 0.97017 0.93632 1.22778 0.96745 1.03043 0.98448 1.22853 0.93434 1.01127 1.03306 0.94448 0.79487 0.91975 0.88984 0.75170 0.78565 0.82592 0.80818 0.77992 0.86198 0.90585 0.88894 0.87838 0.90429 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -57.75 13.06 21.65 0.28 -57.47 16 2 C -0.07 -3.79 5.50 84.86 0.47 -3.33 16 3 Si 0.96 45.67 29.55 68.60 2.03 47.70 16 4 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 5 H -0.30 -14.56 7.11 99.48 0.71 -13.85 16 6 H -0.30 -14.55 7.11 99.48 0.71 -13.84 16 7 C -0.22 -11.15 8.15 84.03 0.69 -10.46 16 8 H 0.08 3.83 6.91 -2.91 -0.02 3.81 16 9 N -0.72 -33.32 3.08 -322.94 -0.99 -34.32 16 10 C 0.19 6.96 2.86 44.99 0.13 7.09 16 11 H 0.06 2.20 8.08 -2.39 -0.02 2.18 16 12 C 0.12 4.21 5.22 86.38 0.45 4.67 16 13 N -0.69 -25.20 5.39 -465.49 -2.51 -27.70 16 14 C 0.59 21.73 7.85 86.94 0.68 22.41 16 15 O -0.55 -21.74 16.94 -3.69 -0.06 -21.80 16 16 C -0.03 -1.15 7.17 42.79 0.31 -0.84 16 17 C -0.18 -4.79 10.77 22.87 0.25 -4.55 16 18 C 0.05 1.29 7.28 24.32 0.18 1.47 16 19 C -0.18 -3.39 6.45 24.10 0.16 -3.24 16 20 C -0.09 -1.34 10.17 21.67 0.22 -1.12 16 21 C -0.15 -1.44 10.15 21.12 0.21 -1.23 16 22 C -0.19 -1.61 11.21 66.80 0.75 -0.86 16 23 S 0.17 2.35 23.11 -56.49 -1.31 1.04 16 24 O 0.14 4.05 11.21 66.58 0.75 4.80 16 25 N -0.34 -11.70 11.81 -48.87 -0.58 -12.27 16 26 C -0.17 -5.47 5.70 -10.80 -0.06 -5.53 16 27 C -0.17 -6.32 9.74 30.62 0.30 -6.02 16 28 C -0.17 -5.76 9.87 30.62 0.30 -5.46 16 29 H 0.25 14.59 8.31 -92.71 -0.77 13.82 16 30 H 0.37 19.33 7.80 -92.71 -0.72 18.61 16 31 H 0.06 2.22 8.14 -2.39 -0.02 2.20 16 32 H 0.09 2.70 8.14 -2.39 -0.02 2.69 16 33 H 0.41 16.05 7.89 -92.71 -0.73 15.32 16 34 H 0.20 4.48 8.06 -2.91 -0.02 4.46 16 35 H 0.16 2.08 8.06 -2.91 -0.02 2.06 16 36 H 0.17 0.78 8.06 -2.91 -0.02 0.76 16 37 H 0.20 0.42 8.06 -2.91 -0.02 0.39 16 38 H 0.12 3.22 8.11 -2.39 -0.02 3.20 16 39 H 0.08 3.50 6.68 -2.39 -0.02 3.48 16 40 H 0.09 2.93 8.14 -2.39 -0.02 2.91 16 41 H 0.10 2.87 8.14 -2.39 -0.02 2.85 16 42 H 0.08 3.04 6.22 -2.39 -0.01 3.02 16 Total: -1.00 -66.43 378.37 2.27 -64.16 By element: Atomic # 1 Polarization: 43.22 SS G_CDS: -0.37 Total: 42.85 kcal Atomic # 6 Polarization: -12.01 SS G_CDS: 5.02 Total: -6.99 kcal Atomic # 7 Polarization: -127.97 SS G_CDS: -3.80 Total: -131.76 kcal Atomic # 8 Polarization: -17.69 SS G_CDS: 0.68 Total: -17.01 kcal Atomic # 14 Polarization: 45.67 SS G_CDS: 2.03 Total: 47.70 kcal Atomic # 16 Polarization: 2.35 SS G_CDS: -1.31 Total: 1.04 kcal Total: -66.43 2.27 -64.16 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001566716868.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 151.731 kcal (2) G-P(sol) polarization free energy of solvation -66.428 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.303 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.266 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.162 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.570 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds