Wall clock time and date at job start Wed Apr 1 2020 04:35:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86804 * 120.00107 * 2 1 4 4 H 1.48496 * 109.46849 * 264.53301 * 3 2 1 5 5 H 1.48502 * 109.46851 * 24.53510 * 3 2 1 6 6 H 1.48499 * 109.47033 * 144.53372 * 3 2 1 7 7 C 1.38807 * 119.99986 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99998 * 337.63715 * 7 2 1 9 9 N 1.36937 * 119.99943 * 157.63228 * 7 2 1 10 10 C 1.47416 * 125.64925 * 341.48256 * 9 7 2 11 11 C 1.54913 * 104.83555 * 204.16259 * 10 9 7 12 12 C 1.55159 * 101.58029 * 322.99478 * 11 10 9 13 13 O 1.42894 * 110.87193 * 277.06315 * 12 11 10 14 14 C 1.53006 * 110.72094 * 153.86285 * 12 11 10 15 15 N 1.46499 * 109.46952 * 190.02649 * 14 12 11 16 16 C 1.34774 * 119.99659 * 180.02562 * 15 14 12 17 17 O 1.21626 * 120.00424 * 359.97438 * 16 15 14 18 18 C 1.47202 * 119.99847 * 179.97438 * 16 15 14 19 19 C 1.33791 * 124.64978 * 179.97438 * 18 16 15 20 20 C 1.40092 * 115.49949 * 179.73557 * 19 18 16 21 21 C 1.41727 * 129.98700 * 179.97438 * 20 19 18 22 22 C 1.36041 * 119.33661 * 179.97438 * 21 20 19 23 23 N 1.32310 * 121.57842 * 0.02562 * 22 21 20 24 24 C 1.31359 * 122.05466 * 359.97438 * 23 22 21 25 25 C 1.39726 * 120.60146 * 0.02562 * 24 23 22 26 26 S 1.75534 * 124.64868 * 359.69518 * 18 16 15 27 27 C 1.47023 * 125.64630 * 161.52604 * 9 7 2 28 28 H 0.97003 * 119.99593 * 0.02562 * 1 2 3 29 29 H 1.08993 * 110.37068 * 323.00595 * 10 9 7 30 30 H 1.09001 * 110.36607 * 85.32640 * 10 9 7 31 31 H 1.08999 * 111.00745 * 204.91813 * 11 10 9 32 32 H 1.09001 * 111.00073 * 81.06408 * 11 10 9 33 33 H 0.96699 * 114.00128 * 177.45009 * 13 12 11 34 34 H 1.08993 * 109.47169 * 70.02024 * 14 12 11 35 35 H 1.09002 * 109.46835 * 310.02086 * 14 12 11 36 36 H 0.96999 * 120.00050 * 359.97438 * 15 14 12 37 37 H 1.08002 * 122.24841 * 359.75831 * 19 18 16 38 38 H 1.08003 * 120.33481 * 0.02562 * 21 20 19 39 39 H 1.07995 * 119.21526 * 179.97438 * 22 21 20 40 40 H 1.08003 * 119.70135 * 180.02562 * 24 23 22 41 41 H 1.09003 * 109.88465 * 59.48649 * 27 9 7 42 42 H 1.08998 * 109.88569 * 298.32308 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.6132 1.9797 -1.3937 5 1 1.3947 2.6833 0.5814 6 1 3.4852 1.4762 0.8124 7 6 2.0102 -1.2021 0.0005 8 1 1.5311 -2.1021 0.3568 9 7 3.3023 -1.2469 -0.4507 10 6 3.9506 -0.2331 -1.3023 11 6 5.0954 -0.9911 -2.0198 12 6 5.5798 -1.9531 -0.9030 13 8 6.4902 -1.2926 -0.0216 14 6 6.2244 -3.2026 -1.5067 15 7 6.4534 -4.1924 -0.4513 16 6 7.0162 -5.3796 -0.7516 17 8 7.3335 -5.6295 -1.8988 18 6 7.2468 -6.3740 0.3090 19 6 7.7967 -7.5784 0.1161 20 6 7.9315 -8.3707 1.2635 21 6 8.4633 -9.6760 1.4117 22 6 8.4896 -10.2489 2.6453 23 7 8.0296 -9.6169 3.7127 24 6 7.5244 -8.4064 3.6424 25 6 7.4542 -7.7349 2.4190 26 16 6.8445 -6.1396 2.0015 27 6 4.2725 -2.3145 -0.1669 28 1 -0.4850 0.8401 -0.0004 29 1 3.2415 0.1604 -2.0304 30 1 4.3547 0.5736 -0.6908 31 1 5.8899 -0.3072 -2.3182 32 1 4.7179 -1.5473 -2.8779 33 1 6.7913 -1.8407 0.7159 34 1 7.1757 -2.9347 -1.9663 35 1 5.5617 -3.6241 -2.2625 36 1 6.2006 -3.9930 0.4637 37 1 8.1156 -7.9168 -0.8587 38 1 8.8447 -10.2102 0.5540 39 1 8.8949 -11.2438 2.7558 40 1 7.1601 -7.9256 4.5383 41 1 3.8922 -3.2681 -0.5334 42 1 4.4553 -2.3737 0.9060 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001569751794.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:35:43 Heat of formation + Delta-G solvation = 9.573214 kcal Electronic energy + Delta-G solvation = -27132.417737 eV Core-core repulsion = 23205.072765 eV Total energy + Delta-G solvation = -3927.344972 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.109 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.94018 -40.21297 -38.85950 -36.52624 -35.49341 -34.52074 -32.31533 -31.94893 -31.15792 -30.08683 -28.73846 -26.62710 -25.25613 -24.46978 -23.42297 -22.00984 -21.23920 -20.56225 -20.14155 -19.17838 -17.57043 -17.16488 -16.95793 -16.71716 -16.27386 -15.80748 -15.67444 -15.23032 -14.97752 -14.86198 -14.49042 -14.35576 -14.32136 -14.16808 -13.61620 -13.45477 -13.16353 -12.87813 -12.41151 -12.30634 -12.20002 -11.94769 -11.72306 -11.41842 -11.25469 -11.07443 -10.89588 -10.49967 -10.46665 -10.17830 -10.14056 -10.12046 -9.81442 -9.64007 -9.47942 -9.35895 -8.74346 -8.39155 -7.12099 -5.99449 -3.31204 -0.31563 0.49639 0.79312 1.25271 1.48642 2.66006 2.75125 3.25414 3.32847 3.47083 3.51212 3.92518 4.03447 4.16196 4.17681 4.37393 4.41084 4.50972 4.53971 4.85923 4.87382 4.98451 5.00378 5.05079 5.11259 5.23618 5.35326 5.51649 5.52911 5.63581 5.67701 5.77512 5.93360 6.01835 6.03504 6.11582 6.26797 6.31074 6.56426 6.68647 7.01358 7.40278 7.61739 7.65658 7.73231 8.25293 8.76322 9.62996 10.09730 11.16200 Molecular weight = 347.11amu Principal moments of inertia in cm(-1) A = 0.018624 B = 0.002443 C = 0.002277 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1503.042596 B =11460.104115 C =12294.384029 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C 0.024 3.976 3 Si 0.883 3.117 4 H -0.284 1.284 5 H -0.302 1.302 6 H -0.274 1.274 7 C -0.246 4.246 8 H 0.092 0.908 9 N -0.604 5.604 10 C 0.113 3.887 11 C -0.113 4.113 12 C 0.103 3.897 13 O -0.543 6.543 14 C 0.104 3.896 15 N -0.718 5.718 16 C 0.588 3.412 17 O -0.520 6.520 18 C -0.204 4.204 19 C -0.053 4.053 20 C -0.045 4.045 21 C -0.119 4.119 22 C 0.078 3.922 23 N -0.466 5.466 24 C 0.161 3.839 25 C -0.198 4.198 26 S 0.167 5.833 27 C 0.113 3.887 28 H 0.264 0.736 29 H 0.062 0.938 30 H 0.033 0.967 31 H 0.080 0.920 32 H 0.087 0.913 33 H 0.369 0.631 34 H 0.082 0.918 35 H 0.087 0.913 36 H 0.399 0.601 37 H 0.161 0.839 38 H 0.144 0.856 39 H 0.162 0.838 40 H 0.166 0.834 41 H 0.042 0.958 42 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.451 -17.043 3.139 26.051 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.175 4.175 3 Si 0.713 3.287 4 H -0.211 1.211 5 H -0.230 1.230 6 H -0.200 1.200 7 C -0.373 4.373 8 H 0.110 0.890 9 N -0.331 5.331 10 C -0.012 4.012 11 C -0.152 4.152 12 C 0.061 3.939 13 O -0.348 6.348 14 C -0.019 4.019 15 N -0.370 5.370 16 C 0.372 3.628 17 O -0.397 6.397 18 C -0.324 4.324 19 C -0.086 4.086 20 C -0.061 4.061 21 C -0.141 4.141 22 C -0.071 4.071 23 N -0.175 5.175 24 C -0.010 4.010 25 C -0.316 4.316 26 S 0.432 5.568 27 C -0.013 4.013 28 H 0.074 0.926 29 H 0.080 0.920 30 H 0.051 0.949 31 H 0.098 0.902 32 H 0.106 0.894 33 H 0.215 0.785 34 H 0.101 0.899 35 H 0.105 0.895 36 H 0.234 0.766 37 H 0.178 0.822 38 H 0.161 0.839 39 H 0.179 0.821 40 H 0.183 0.817 41 H 0.060 0.940 42 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges 18.714 -15.866 3.473 24.779 hybrid contribution 0.912 -0.128 -0.634 1.118 sum 19.626 -15.994 2.840 25.476 Atomic orbital electron populations 1.69842 1.05560 1.26706 1.52872 1.24991 0.95161 0.97468 0.99872 0.86984 0.79239 0.84543 0.77936 1.21144 1.23010 1.20005 1.18604 0.84080 0.95509 1.39099 0.89044 1.44672 1.09571 1.21989 1.56827 1.21980 0.93176 0.92683 0.93345 1.22754 0.98688 0.97967 0.95771 1.22547 0.88760 0.90822 0.91775 1.86612 1.64096 1.43147 1.40908 1.22174 1.02015 0.87513 0.90210 1.45864 1.62595 1.15971 1.12587 1.17009 0.77867 0.80942 0.86951 1.90844 1.51085 1.77948 1.19798 1.24005 1.09880 1.00183 0.98375 1.20159 0.97168 0.91622 0.99641 1.18349 1.00072 0.95759 0.91917 1.21817 0.99229 0.93259 0.99788 1.22200 0.96980 1.00158 0.87775 1.67734 1.09117 1.08203 1.32456 1.22404 0.94007 0.89946 0.94609 1.24139 1.07520 1.00558 0.99426 1.84291 1.62271 1.11630 0.98596 1.22010 0.88632 0.93595 0.97079 0.92616 0.91953 0.94933 0.90189 0.89428 0.78457 0.89942 0.89497 0.76590 0.82173 0.83869 0.82102 0.81684 0.94030 0.94848 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -27.69 13.97 55.49 0.78 -26.91 16 2 C 0.02 0.69 5.43 -17.43 -0.09 0.60 16 3 Si 0.88 22.53 24.27 -169.99 -4.13 18.40 16 4 H -0.28 -6.96 6.49 56.52 0.37 -6.59 16 5 H -0.30 -7.80 7.11 56.52 0.40 -7.40 16 6 H -0.27 -7.00 6.66 56.52 0.38 -6.62 16 7 C -0.25 -6.86 10.57 -15.06 -0.16 -7.02 16 8 H 0.09 2.69 8.06 -52.48 -0.42 2.27 16 9 N -0.60 -14.19 3.21 -170.08 -0.55 -14.73 16 10 C 0.11 2.42 4.69 -2.53 -0.01 2.41 16 11 C -0.11 -1.83 6.26 -24.58 -0.15 -1.98 16 12 C 0.10 1.52 0.93 -88.78 -0.08 1.44 16 13 O -0.54 -7.86 13.10 -35.23 -0.46 -8.32 16 14 C 0.10 1.30 4.80 -4.04 -0.02 1.28 16 15 N -0.72 -8.06 5.13 -61.45 -0.32 -8.37 16 16 C 0.59 7.20 7.80 -12.62 -0.10 7.10 16 17 O -0.52 -7.89 16.73 5.25 0.09 -7.80 16 18 C -0.20 -2.09 6.33 -37.50 -0.24 -2.33 16 19 C -0.05 -0.50 9.81 -40.45 -0.40 -0.90 16 20 C -0.05 -0.40 5.91 -107.11 -0.63 -1.03 16 21 C -0.12 -0.82 10.13 -39.04 -0.40 -1.22 16 22 C 0.08 0.55 11.06 -18.13 -0.20 0.35 16 23 N -0.47 -4.17 10.34 -13.41 -0.14 -4.31 16 24 C 0.16 1.33 11.24 -17.20 -0.19 1.13 16 25 C -0.20 -1.75 6.54 -38.27 -0.25 -2.00 16 26 S 0.17 1.41 22.26 -107.50 -2.39 -0.98 16 27 C 0.11 2.06 5.76 -3.06 -0.02 2.04 16 28 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 29 H 0.06 1.41 6.63 -51.93 -0.34 1.07 16 30 H 0.03 0.75 5.58 -51.93 -0.29 0.46 16 31 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 32 H 0.09 1.28 7.96 -51.93 -0.41 0.87 16 33 H 0.37 3.87 8.44 45.56 0.38 4.25 16 34 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 35 H 0.09 1.14 8.03 -51.93 -0.42 0.72 16 36 H 0.40 3.88 6.52 -40.82 -0.27 3.61 16 37 H 0.16 1.36 7.96 -52.49 -0.42 0.95 16 38 H 0.14 0.60 8.06 -52.48 -0.42 0.17 16 39 H 0.16 0.67 8.06 -52.49 -0.42 0.25 16 40 H 0.17 0.95 8.06 -52.48 -0.42 0.53 16 41 H 0.04 0.75 7.82 -51.93 -0.41 0.34 16 42 H 0.03 0.59 8.07 -51.93 -0.42 0.17 16 LS Contribution 360.35 15.07 5.43 5.43 Total: -1.00 -35.08 360.35 -8.95 -44.03 By element: Atomic # 1 Polarization: 8.01 SS G_CDS: -4.32 Total: 3.69 kcal Atomic # 6 Polarization: 2.83 SS G_CDS: -2.94 Total: -0.11 kcal Atomic # 7 Polarization: -54.10 SS G_CDS: -0.22 Total: -54.33 kcal Atomic # 8 Polarization: -15.75 SS G_CDS: -0.37 Total: -16.12 kcal Atomic # 14 Polarization: 22.53 SS G_CDS: -4.13 Total: 18.40 kcal Atomic # 16 Polarization: 1.41 SS G_CDS: -2.39 Total: -0.98 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -35.08 -8.95 -44.03 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569751794.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.600 kcal (2) G-P(sol) polarization free energy of solvation -35.075 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.525 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.952 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.027 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.573 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds