Wall clock time and date at job start Wed Apr 1 2020 04:35:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86804 * 120.00107 * 2 1 4 4 H 1.48496 * 109.46849 * 264.53301 * 3 2 1 5 5 H 1.48502 * 109.46851 * 24.53510 * 3 2 1 6 6 H 1.48499 * 109.47033 * 144.53372 * 3 2 1 7 7 C 1.38807 * 119.99986 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99998 * 337.63715 * 7 2 1 9 9 N 1.36937 * 119.99943 * 157.63228 * 7 2 1 10 10 C 1.47416 * 125.64925 * 341.48256 * 9 7 2 11 11 C 1.54913 * 104.83555 * 204.16259 * 10 9 7 12 12 C 1.55159 * 101.58029 * 322.99478 * 11 10 9 13 13 O 1.42894 * 110.87193 * 277.06315 * 12 11 10 14 14 C 1.53006 * 110.72094 * 153.86285 * 12 11 10 15 15 N 1.46499 * 109.46952 * 190.02649 * 14 12 11 16 16 C 1.34774 * 119.99659 * 180.02562 * 15 14 12 17 17 O 1.21626 * 120.00424 * 359.97438 * 16 15 14 18 18 C 1.47202 * 119.99847 * 179.97438 * 16 15 14 19 19 C 1.33791 * 124.64978 * 179.97438 * 18 16 15 20 20 C 1.40092 * 115.49949 * 179.73557 * 19 18 16 21 21 C 1.41727 * 129.98700 * 179.97438 * 20 19 18 22 22 C 1.36041 * 119.33661 * 179.97438 * 21 20 19 23 23 N 1.32310 * 121.57842 * 0.02562 * 22 21 20 24 24 C 1.31359 * 122.05466 * 359.97438 * 23 22 21 25 25 C 1.39726 * 120.60146 * 0.02562 * 24 23 22 26 26 S 1.75534 * 124.64868 * 359.69518 * 18 16 15 27 27 C 1.47023 * 125.64630 * 161.52604 * 9 7 2 28 28 H 0.97003 * 119.99593 * 0.02562 * 1 2 3 29 29 H 1.08993 * 110.37068 * 323.00595 * 10 9 7 30 30 H 1.09001 * 110.36607 * 85.32640 * 10 9 7 31 31 H 1.08999 * 111.00745 * 204.91813 * 11 10 9 32 32 H 1.09001 * 111.00073 * 81.06408 * 11 10 9 33 33 H 0.96699 * 114.00128 * 177.45009 * 13 12 11 34 34 H 1.08993 * 109.47169 * 70.02024 * 14 12 11 35 35 H 1.09002 * 109.46835 * 310.02086 * 14 12 11 36 36 H 0.96999 * 120.00050 * 359.97438 * 15 14 12 37 37 H 1.08002 * 122.24841 * 359.75831 * 19 18 16 38 38 H 1.08003 * 120.33481 * 0.02562 * 21 20 19 39 39 H 1.07995 * 119.21526 * 179.97438 * 22 21 20 40 40 H 1.08003 * 119.70135 * 180.02562 * 24 23 22 41 41 H 1.09003 * 109.88465 * 59.48649 * 27 9 7 42 42 H 1.08998 * 109.88569 * 298.32308 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.6132 1.9797 -1.3937 5 1 1.3947 2.6833 0.5814 6 1 3.4852 1.4762 0.8124 7 6 2.0102 -1.2021 0.0005 8 1 1.5311 -2.1021 0.3568 9 7 3.3023 -1.2469 -0.4507 10 6 3.9506 -0.2331 -1.3023 11 6 5.0954 -0.9911 -2.0198 12 6 5.5798 -1.9531 -0.9030 13 8 6.4902 -1.2926 -0.0216 14 6 6.2244 -3.2026 -1.5067 15 7 6.4534 -4.1924 -0.4513 16 6 7.0162 -5.3796 -0.7516 17 8 7.3335 -5.6295 -1.8988 18 6 7.2468 -6.3740 0.3090 19 6 7.7967 -7.5784 0.1161 20 6 7.9315 -8.3707 1.2635 21 6 8.4633 -9.6760 1.4117 22 6 8.4896 -10.2489 2.6453 23 7 8.0296 -9.6169 3.7127 24 6 7.5244 -8.4064 3.6424 25 6 7.4542 -7.7349 2.4190 26 16 6.8445 -6.1396 2.0015 27 6 4.2725 -2.3145 -0.1669 28 1 -0.4850 0.8401 -0.0004 29 1 3.2415 0.1604 -2.0304 30 1 4.3547 0.5736 -0.6908 31 1 5.8899 -0.3072 -2.3182 32 1 4.7179 -1.5473 -2.8779 33 1 6.7913 -1.8407 0.7159 34 1 7.1757 -2.9347 -1.9663 35 1 5.5617 -3.6241 -2.2625 36 1 6.2006 -3.9930 0.4637 37 1 8.1156 -7.9168 -0.8587 38 1 8.8447 -10.2102 0.5540 39 1 8.8949 -11.2438 2.7558 40 1 7.1601 -7.9256 4.5383 41 1 3.8922 -3.2681 -0.5334 42 1 4.4553 -2.3737 0.9060 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001569751794.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:35:42 Heat of formation + Delta-G solvation = -17.929649 kcal Electronic energy + Delta-G solvation = -27133.610351 eV Core-core repulsion = 23205.072765 eV Total energy + Delta-G solvation = -3928.537586 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.109 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.61272 -41.19167 -40.09279 -37.27461 -36.93015 -35.55659 -34.25897 -32.51339 -32.12168 -31.48004 -30.07998 -28.01149 -26.30346 -25.24317 -24.66271 -23.08263 -22.58024 -21.53559 -21.37522 -19.98131 -18.97318 -18.40882 -17.74880 -17.61066 -17.32694 -17.10891 -16.69358 -16.51546 -15.99184 -15.75290 -15.61936 -15.47044 -15.33602 -15.19905 -14.90272 -14.56490 -14.23019 -14.10159 -13.85717 -13.56087 -13.33795 -13.14515 -12.96599 -12.91094 -12.76886 -12.22208 -12.08361 -12.04475 -11.87899 -11.55629 -11.35074 -11.07049 -11.04701 -10.84244 -10.77004 -10.50047 -10.17506 -9.09722 -8.99855 -8.20555 -5.47589 -1.00867 -0.06930 0.12694 0.58119 0.78046 1.29312 1.38599 1.47572 1.75048 1.87975 2.39255 2.67193 2.94609 3.11002 3.14208 3.29160 3.44506 3.54774 3.57592 3.67490 3.71111 3.78228 3.80593 4.29726 4.32542 4.33083 4.44963 4.53270 4.59992 4.64377 4.69322 4.74561 4.80593 4.91520 4.91996 4.96127 5.04898 5.10343 5.14411 5.51642 5.63354 6.07248 6.11399 6.67847 6.71863 6.81376 6.83367 7.50234 8.05782 8.98934 Molecular weight = 347.11amu Principal moments of inertia in cm(-1) A = 0.018624 B = 0.002443 C = 0.002277 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1503.042596 B =11460.104115 C =12294.384029 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.954 5.954 2 C -0.034 4.034 3 Si 0.945 3.055 4 H -0.269 1.269 5 H -0.308 1.308 6 H -0.273 1.273 7 C -0.235 4.235 8 H 0.062 0.938 9 N -0.623 5.623 10 C 0.104 3.896 11 C -0.106 4.106 12 C 0.122 3.878 13 O -0.552 6.552 14 C 0.116 3.884 15 N -0.713 5.713 16 C 0.591 3.409 17 O -0.553 6.553 18 C -0.226 4.226 19 C -0.046 4.046 20 C -0.063 4.063 21 C -0.113 4.113 22 C 0.072 3.928 23 N -0.484 5.484 24 C 0.152 3.848 25 C -0.208 4.208 26 S 0.185 5.815 27 C 0.107 3.893 28 H 0.263 0.737 29 H 0.045 0.955 30 H 0.023 0.977 31 H 0.104 0.896 32 H 0.103 0.897 33 H 0.387 0.613 34 H 0.094 0.906 35 H 0.083 0.917 36 H 0.407 0.593 37 H 0.166 0.834 38 H 0.172 0.828 39 H 0.190 0.810 40 H 0.183 0.817 41 H 0.044 0.956 42 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.178 -17.957 3.061 28.700 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.600 5.600 2 C -0.229 4.229 3 Si 0.774 3.226 4 H -0.195 1.195 5 H -0.237 1.237 6 H -0.199 1.199 7 C -0.364 4.364 8 H 0.080 0.920 9 N -0.350 5.350 10 C -0.021 4.021 11 C -0.144 4.144 12 C 0.080 3.920 13 O -0.359 6.359 14 C -0.008 4.008 15 N -0.364 5.364 16 C 0.377 3.623 17 O -0.433 6.433 18 C -0.347 4.347 19 C -0.079 4.079 20 C -0.078 4.078 21 C -0.135 4.135 22 C -0.077 4.077 23 N -0.194 5.194 24 C -0.019 4.019 25 C -0.326 4.326 26 S 0.451 5.549 27 C -0.018 4.018 28 H 0.072 0.928 29 H 0.063 0.937 30 H 0.041 0.959 31 H 0.122 0.878 32 H 0.122 0.878 33 H 0.236 0.764 34 H 0.112 0.888 35 H 0.102 0.898 36 H 0.243 0.757 37 H 0.183 0.817 38 H 0.189 0.811 39 H 0.207 0.793 40 H 0.200 0.800 41 H 0.062 0.938 42 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 21.488 -16.788 3.419 27.482 hybrid contribution 0.106 -0.032 -0.538 0.549 sum 21.594 -16.820 2.881 27.523 Atomic orbital electron populations 1.69960 1.07109 1.27289 1.55684 1.25594 0.95758 1.00603 1.00922 0.85978 0.77619 0.80474 0.78553 1.19508 1.23686 1.19865 1.18569 0.86084 0.94376 1.37326 0.91982 1.44776 1.09194 1.23673 1.57380 1.22048 0.94383 0.92729 0.92896 1.22749 0.97333 0.98258 0.96088 1.22239 0.87380 0.91394 0.90997 1.86580 1.63572 1.44011 1.41724 1.21978 1.02197 0.86497 0.90116 1.45768 1.62269 1.15629 1.12762 1.17194 0.77114 0.81121 0.86886 1.90823 1.52632 1.78621 1.21213 1.23861 1.11608 1.00276 0.98929 1.20303 0.96103 0.91341 1.00141 1.18545 1.00888 0.96736 0.91623 1.22153 0.98071 0.92463 1.00794 1.22718 0.96395 1.01185 0.87406 1.67775 1.09519 1.08557 1.33525 1.22720 0.94072 0.89994 0.95101 1.24302 1.07708 1.00770 0.99868 1.84126 1.62119 1.11569 0.97135 1.22237 0.89372 0.92071 0.98163 0.92808 0.93723 0.95947 0.87753 0.87832 0.76355 0.88782 0.89832 0.75690 0.81656 0.81084 0.79326 0.79986 0.93776 0.94046 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.99 13.97 21.65 0.30 -59.69 16 2 C -0.03 -1.99 5.43 84.86 0.46 -1.53 16 3 Si 0.94 47.21 24.27 68.60 1.67 48.87 16 4 H -0.27 -12.62 6.49 99.48 0.65 -11.97 16 5 H -0.31 -15.56 7.11 99.48 0.71 -14.85 16 6 H -0.27 -13.41 6.66 99.48 0.66 -12.75 16 7 C -0.24 -13.34 10.57 84.03 0.89 -12.45 16 8 H 0.06 3.80 8.06 -2.91 -0.02 3.77 16 9 N -0.62 -28.97 3.21 -692.01 -2.22 -31.19 16 10 C 0.10 4.30 4.69 86.86 0.41 4.71 16 11 C -0.11 -3.13 6.26 31.99 0.20 -2.93 16 12 C 0.12 3.29 0.93 -9.60 -0.01 3.28 16 13 O -0.55 -14.21 13.10 -148.98 -1.95 -16.16 16 14 C 0.12 2.59 4.80 86.38 0.41 3.01 16 15 N -0.71 -14.60 5.13 -466.59 -2.39 -16.99 16 16 C 0.59 13.68 7.80 86.60 0.68 14.36 16 17 O -0.55 -16.18 16.73 -4.11 -0.07 -16.25 16 18 C -0.23 -4.37 6.33 23.62 0.15 -4.22 16 19 C -0.05 -0.80 9.81 21.71 0.21 -0.59 16 20 C -0.06 -1.00 5.91 -21.48 -0.13 -1.13 16 21 C -0.11 -1.29 10.13 22.62 0.23 -1.06 16 22 C 0.07 0.85 11.06 84.11 0.93 1.78 16 23 N -0.48 -7.85 10.34 -196.34 -2.03 -9.88 16 24 C 0.15 2.29 11.24 85.12 0.96 3.25 16 25 C -0.21 -3.40 6.54 23.12 0.15 -3.24 16 26 S 0.18 2.89 22.26 -56.49 -1.26 1.63 16 27 C 0.11 3.73 5.76 86.73 0.50 4.23 16 28 H 0.26 15.72 8.31 -92.71 -0.77 14.95 16 29 H 0.04 1.98 6.63 -2.39 -0.02 1.97 16 30 H 0.02 0.99 5.58 -2.39 -0.01 0.98 16 31 H 0.10 2.63 8.14 -2.39 -0.02 2.61 16 32 H 0.10 2.74 7.96 -2.39 -0.02 2.72 16 33 H 0.39 6.87 8.44 -74.06 -0.62 6.24 16 34 H 0.09 1.98 8.14 -2.39 -0.02 1.96 16 35 H 0.08 1.99 8.03 -2.39 -0.02 1.97 16 36 H 0.41 7.09 6.52 -92.71 -0.60 6.48 16 37 H 0.17 2.61 7.96 -2.91 -0.02 2.59 16 38 H 0.17 0.88 8.06 -2.91 -0.02 0.86 16 39 H 0.19 1.01 8.06 -2.91 -0.02 0.98 16 40 H 0.18 1.87 8.06 -2.91 -0.02 1.84 16 41 H 0.04 1.53 7.82 -2.39 -0.02 1.51 16 42 H 0.04 1.39 8.07 -2.39 -0.02 1.37 16 Total: -1.00 -76.80 360.35 -2.16 -78.96 By element: Atomic # 1 Polarization: 13.49 SS G_CDS: -0.25 Total: 13.24 kcal Atomic # 6 Polarization: 1.41 SS G_CDS: 6.04 Total: 7.45 kcal Atomic # 7 Polarization: -111.41 SS G_CDS: -6.34 Total: -117.75 kcal Atomic # 8 Polarization: -30.39 SS G_CDS: -2.02 Total: -32.41 kcal Atomic # 14 Polarization: 47.21 SS G_CDS: 1.67 Total: 48.87 kcal Atomic # 16 Polarization: 2.89 SS G_CDS: -1.26 Total: 1.63 kcal Total: -76.80 -2.16 -78.96 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569751794.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.032 kcal (2) G-P(sol) polarization free energy of solvation -76.805 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.773 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.157 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.961 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.930 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds