Wall clock time and date at job start Wed Apr 1 2020 04:50:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86794 * 120.00379 * 2 1 4 4 H 1.48496 * 109.47442 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.47115 * 299.99689 * 3 2 1 6 6 H 1.48500 * 109.47142 * 59.99609 * 3 2 1 7 7 C 1.38809 * 119.99517 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00072 * 180.02562 * 7 2 1 9 9 N 1.36938 * 120.00230 * 0.02562 * 7 2 1 10 10 C 1.47584 * 134.49426 * 179.97438 * 9 7 2 11 11 C 1.53946 * 86.11939 * 155.35261 * 10 9 7 12 12 C 1.52996 * 113.74291 * 137.94916 * 11 10 9 13 13 C 1.53000 * 109.46850 * 65.87408 * 12 11 10 14 14 O 1.42908 * 109.46964 * 175.77077 * 13 12 11 15 15 N 1.46499 * 113.74347 * 269.15694 * 11 10 9 16 16 C 1.34775 * 120.00398 * 168.32238 * 15 11 10 17 17 O 1.21595 * 119.99715 * 355.04064 * 16 15 11 18 18 C 1.47552 * 120.00148 * 175.04201 * 16 15 11 19 19 C 1.40117 * 120.58962 * 359.72437 * 18 16 15 20 20 N 1.30610 * 121.17124 * 179.71766 * 19 18 16 21 21 C 1.34915 * 122.44846 * 0.54634 * 20 19 18 22 22 C 1.40616 * 128.45669 * 179.71564 * 21 20 19 23 23 C 1.32287 * 115.90500 * 180.02562 * 22 21 20 24 24 S 1.75510 * 110.83893 * 0.02562 * 23 22 21 25 25 C 1.40101 * 119.27041 * 359.74891 * 21 20 19 26 26 C 1.39369 * 119.74947 * 359.97314 * 25 21 20 27 27 C 1.47583 * 134.49230 * 359.97438 * 9 7 2 28 28 H 0.97007 * 119.99670 * 0.02562 * 1 2 3 29 29 H 1.08999 * 113.76752 * 41.05341 * 10 9 7 30 30 H 1.08994 * 113.76900 * 269.65391 * 10 9 7 31 31 H 1.09004 * 109.47342 * 185.87459 * 12 11 10 32 32 H 1.09005 * 109.47271 * 305.87419 * 12 11 10 33 33 H 1.09000 * 109.47226 * 295.76224 * 13 12 11 34 34 H 1.08996 * 109.47230 * 55.76923 * 13 12 11 35 35 H 0.96698 * 113.99528 * 180.02562 * 14 13 12 36 36 H 0.97005 * 119.99562 * 348.31467 * 15 11 10 37 37 H 1.08000 * 119.41391 * 359.97438 * 19 18 16 38 38 H 1.07994 * 122.05092 * 0.05115 * 22 21 20 39 39 H 1.08001 * 124.57848 * 180.02562 * 23 22 21 40 40 H 1.07994 * 120.73096 * 179.97438 * 26 25 21 41 41 H 1.09006 * 113.76510 * 90.34474 * 27 9 7 42 42 H 1.09001 * 113.77307 * 318.95437 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 3.7102 1.3463 0.0006 5 1 1.8916 2.3963 -1.2126 6 1 1.8915 2.3964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2023 0.0010 9 7 1.3254 -2.3881 0.0005 10 6 1.7199 -3.8102 0.0005 11 6 0.3468 -4.0829 0.6411 12 6 -0.3638 -5.3135 0.0742 13 6 0.4291 -6.5714 0.4345 14 8 -0.2843 -7.7275 -0.0091 15 7 0.3637 -4.0573 2.1057 16 6 -0.7957 -4.0441 2.7929 17 8 -1.8535 -3.9625 2.1990 18 6 -0.7812 -4.1288 4.2659 19 6 0.4304 -4.2290 4.9625 20 7 0.4567 -4.2991 6.2665 21 6 -0.6659 -4.2905 7.0147 22 6 -0.7850 -4.3649 8.4138 23 6 -2.0184 -4.3364 8.8912 24 16 -3.1889 -4.2101 7.5895 25 6 -1.9115 -4.1982 6.3799 26 6 -1.9750 -4.1162 4.9901 27 6 -0.1035 -2.7573 0.0005 28 1 -0.4850 0.8401 -0.0004 29 1 2.5622 -4.0324 0.6557 30 1 1.8315 -4.2351 -0.9969 31 1 -1.3659 -5.3818 0.4978 32 1 -0.4331 -5.2258 -1.0101 33 1 1.4042 -6.5378 -0.0513 34 1 0.5628 -6.6195 1.5152 35 1 0.1607 -8.5634 0.1868 36 1 1.2093 -4.0499 2.5810 37 1 1.3592 -4.2444 4.4117 38 1 0.0776 -4.4402 9.0592 39 1 -2.2709 -4.3844 9.9402 40 1 -2.9265 -4.0449 4.4844 41 1 -0.5273 -2.8731 -0.9971 42 1 -0.7171 -2.1389 0.6556 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001570762654.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:50:43 Heat of formation + Delta-G solvation = 37.789253 kcal Electronic energy + Delta-G solvation = -27916.175473 eV Core-core repulsion = 23990.054040 eV Total energy + Delta-G solvation = -3926.121433 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.109 amu Computer time = 1.41 seconds Orbital eigenvalues (eV) -40.83555 -39.74777 -37.76855 -36.56831 -35.82541 -33.59017 -32.63707 -32.09868 -30.74499 -29.75950 -27.06849 -25.28572 -25.12300 -24.04624 -23.35943 -22.07009 -21.28944 -20.54786 -18.89821 -18.55606 -17.40273 -16.96191 -16.80341 -16.61889 -16.23238 -15.31757 -15.09560 -14.95830 -14.70796 -14.38592 -14.15752 -14.06913 -13.80757 -13.55664 -13.41616 -13.08438 -12.86649 -12.68958 -12.47351 -11.96460 -11.64323 -11.54948 -11.37098 -11.23437 -11.02769 -10.87276 -10.61949 -10.61034 -10.11959 -10.06468 -9.86855 -9.75347 -9.55206 -9.30119 -8.97157 -8.86431 -8.50617 -8.26611 -6.92090 -5.77313 -3.12039 -0.00126 0.86226 1.10439 1.56971 1.71915 3.04443 3.32984 3.37859 3.42317 3.45595 3.77100 3.82061 4.29509 4.39987 4.44947 4.61058 4.69477 4.80625 4.94880 4.97370 5.23734 5.26270 5.33050 5.42955 5.45067 5.50478 5.59293 5.71709 5.77861 5.86971 5.90400 6.11094 6.19944 6.24167 6.26951 6.43796 6.60275 6.84721 7.21876 7.29569 7.56986 7.64317 7.70707 7.82549 7.96407 8.51228 9.01449 9.68417 10.54209 11.38441 Molecular weight = 347.11amu Principal moments of inertia in cm(-1) A = 0.009286 B = 0.003493 C = 0.002806 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3014.561696 B = 8013.730100 C = 9976.502756 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C -0.004 4.004 3 Si 0.910 3.090 4 H -0.279 1.279 5 H -0.290 1.290 6 H -0.290 1.290 7 C -0.228 4.228 8 H 0.080 0.920 9 N -0.608 5.608 10 C 0.120 3.880 11 C 0.125 3.875 12 C -0.118 4.118 13 C 0.080 3.920 14 O -0.576 6.576 15 N -0.684 5.684 16 C 0.566 3.434 17 O -0.524 6.524 18 C -0.166 4.166 19 C 0.160 3.840 20 N -0.461 5.461 21 C 0.139 3.861 22 C -0.117 4.117 23 C -0.170 4.170 24 S 0.121 5.879 25 C -0.208 4.208 26 C 0.027 3.973 27 C 0.169 3.831 28 H 0.254 0.746 29 H 0.047 0.953 30 H 0.049 0.951 31 H 0.084 0.916 32 H 0.079 0.921 33 H 0.045 0.955 34 H 0.040 0.960 35 H 0.373 0.627 36 H 0.397 0.603 37 H 0.167 0.833 38 H 0.154 0.846 39 H 0.177 0.823 40 H 0.154 0.846 41 H 0.035 0.965 42 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.941 -14.270 14.973 20.775 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.201 4.201 3 Si 0.740 3.260 4 H -0.205 1.205 5 H -0.217 1.217 6 H -0.217 1.217 7 C -0.355 4.355 8 H 0.098 0.902 9 N -0.334 5.334 10 C -0.007 4.007 11 C 0.037 3.963 12 C -0.157 4.157 13 C 0.002 3.998 14 O -0.380 6.380 15 N -0.334 5.334 16 C 0.352 3.648 17 O -0.401 6.401 18 C -0.174 4.174 19 C -0.012 4.012 20 N -0.169 5.169 21 C 0.005 3.995 22 C -0.148 4.148 23 C -0.307 4.307 24 S 0.384 5.616 25 C -0.326 4.326 26 C -0.003 4.003 27 C 0.043 3.957 28 H 0.064 0.936 29 H 0.065 0.935 30 H 0.067 0.933 31 H 0.103 0.897 32 H 0.097 0.903 33 H 0.063 0.937 34 H 0.058 0.942 35 H 0.218 0.782 36 H 0.233 0.767 37 H 0.184 0.816 38 H 0.171 0.829 39 H 0.194 0.806 40 H 0.171 0.829 41 H 0.053 0.947 42 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -3.892 -13.376 14.855 20.365 hybrid contribution 2.114 0.680 -0.054 2.221 sum -1.778 -12.696 14.800 19.581 Atomic orbital electron populations 1.69848 1.04969 1.25296 1.55901 1.24793 0.95606 0.97503 1.02186 0.86092 0.78715 0.83891 0.77289 1.20458 1.21708 1.21748 1.18993 0.90174 0.81777 1.44589 0.90181 1.45961 1.02308 0.98942 1.86213 1.22862 0.93123 0.87393 0.97322 1.22330 0.98755 0.96032 0.79136 1.21722 1.00892 0.91245 1.01873 1.22201 0.94522 0.85588 0.97454 1.86513 1.51184 1.16376 1.83966 1.45322 1.07684 1.73858 1.06494 1.17655 0.84533 0.77127 0.85521 1.90791 1.30493 1.48893 1.69875 1.21025 0.94668 1.06463 0.95289 1.22886 0.97184 0.91894 0.89285 1.67572 1.29260 1.12862 1.07215 1.19245 0.87869 0.98507 0.93832 1.19643 0.98489 1.04119 0.92518 1.25413 0.95851 1.05763 1.03644 1.84340 1.06623 1.76354 0.94306 1.23538 0.98639 1.11607 0.98771 1.21002 0.99453 0.89918 0.89890 1.22557 0.88026 0.88039 0.97030 0.93613 0.93526 0.93321 0.89694 0.90255 0.93676 0.94155 0.78160 0.76733 0.81594 0.82861 0.80552 0.82857 0.94681 0.89857 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 27. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -27.28 11.38 55.49 0.63 -26.65 16 2 C 0.00 -0.10 5.50 -17.43 -0.10 -0.20 16 3 Si 0.91 22.04 29.55 -169.99 -5.02 17.02 16 4 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 5 H -0.29 -7.11 7.11 56.52 0.40 -6.70 16 6 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 7 C -0.23 -6.20 10.70 -15.06 -0.16 -6.36 16 8 H 0.08 2.09 7.83 -52.49 -0.41 1.68 16 9 N -0.61 -14.88 3.70 -177.68 -0.66 -15.54 16 10 C 0.12 2.22 7.63 -2.97 -0.02 2.20 16 11 C 0.12 2.26 0.60 -134.02 -0.08 2.18 16 12 C -0.12 -1.94 4.92 -26.73 -0.13 -2.07 16 13 C 0.08 1.05 6.81 37.16 0.25 1.31 16 14 O -0.58 -7.55 13.66 -35.23 -0.48 -8.04 16 15 N -0.68 -11.13 4.86 -50.09 -0.24 -11.38 16 16 C 0.57 9.77 7.36 -12.46 -0.09 9.68 16 17 O -0.52 -10.72 14.42 5.28 0.08 -10.64 16 18 C -0.17 -2.43 5.89 -104.88 -0.62 -3.05 16 19 C 0.16 2.09 10.69 -17.37 -0.19 1.91 16 20 N -0.46 -6.31 10.39 -11.00 -0.11 -6.42 16 21 C 0.14 1.78 6.97 -84.92 -0.59 1.19 16 22 C -0.12 -1.14 10.16 -40.61 -0.41 -1.55 16 23 C -0.17 -1.33 11.08 28.81 0.32 -1.01 16 24 S 0.12 1.14 23.29 -107.50 -2.50 -1.36 16 25 C -0.21 -2.63 6.49 -38.46 -0.25 -2.88 16 26 C 0.03 0.38 9.73 -38.64 -0.38 0.01 16 27 C 0.17 4.03 6.49 -2.97 -0.02 4.01 16 28 H 0.25 7.39 8.31 -40.82 -0.34 7.05 16 29 H 0.05 0.77 8.08 -51.93 -0.42 0.35 16 30 H 0.05 0.87 8.10 -51.93 -0.42 0.45 16 31 H 0.08 1.57 6.53 -51.93 -0.34 1.23 16 32 H 0.08 1.32 8.06 -51.93 -0.42 0.90 16 33 H 0.04 0.53 7.77 -51.93 -0.40 0.13 16 34 H 0.04 0.50 7.84 -51.93 -0.41 0.09 16 35 H 0.37 2.97 9.12 45.56 0.42 3.38 16 36 H 0.40 5.47 6.71 -40.82 -0.27 5.19 16 37 H 0.17 1.75 6.42 -52.49 -0.34 1.41 16 38 H 0.15 1.19 8.06 -52.49 -0.42 0.77 16 39 H 0.18 0.76 8.06 -52.49 -0.42 0.34 16 40 H 0.15 2.07 7.72 -52.49 -0.41 1.66 16 41 H 0.04 0.87 8.04 -51.93 -0.42 0.45 16 42 H 0.08 2.31 6.85 -51.93 -0.36 1.95 16 LS Contribution 367.09 15.07 5.53 5.53 Total: -1.00 -35.17 367.09 -9.42 -44.59 By element: Atomic # 1 Polarization: 11.69 SS G_CDS: -4.17 Total: 7.52 kcal Atomic # 6 Polarization: 7.83 SS G_CDS: -2.46 Total: 5.36 kcal Atomic # 7 Polarization: -59.60 SS G_CDS: -0.38 Total: -59.98 kcal Atomic # 8 Polarization: -18.27 SS G_CDS: -0.41 Total: -18.68 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -5.02 Total: 17.02 kcal Atomic # 16 Polarization: 1.14 SS G_CDS: -2.50 Total: -1.36 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -35.17 -9.42 -44.59 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001570762654.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.382 kcal (2) G-P(sol) polarization free energy of solvation -35.171 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.210 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.421 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.592 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.789 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.41 seconds