Wall clock time and date at job start Wed Apr 1 2020 04:50:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86794 * 120.00379 * 2 1 4 4 H 1.48496 * 109.47442 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.47115 * 299.99689 * 3 2 1 6 6 H 1.48500 * 109.47142 * 59.99609 * 3 2 1 7 7 C 1.38809 * 119.99517 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00072 * 180.02562 * 7 2 1 9 9 N 1.36938 * 120.00230 * 0.02562 * 7 2 1 10 10 C 1.47584 * 134.49426 * 179.97438 * 9 7 2 11 11 C 1.53946 * 86.11939 * 155.35261 * 10 9 7 12 12 C 1.52996 * 113.74291 * 137.94916 * 11 10 9 13 13 C 1.53000 * 109.46850 * 65.87408 * 12 11 10 14 14 O 1.42908 * 109.46964 * 175.77077 * 13 12 11 15 15 N 1.46499 * 113.74347 * 269.15694 * 11 10 9 16 16 C 1.34775 * 120.00398 * 168.32238 * 15 11 10 17 17 O 1.21595 * 119.99715 * 355.04064 * 16 15 11 18 18 C 1.47552 * 120.00148 * 175.04201 * 16 15 11 19 19 C 1.40117 * 120.58962 * 359.72437 * 18 16 15 20 20 N 1.30610 * 121.17124 * 179.71766 * 19 18 16 21 21 C 1.34915 * 122.44846 * 0.54634 * 20 19 18 22 22 C 1.40616 * 128.45669 * 179.71564 * 21 20 19 23 23 C 1.32287 * 115.90500 * 180.02562 * 22 21 20 24 24 S 1.75510 * 110.83893 * 0.02562 * 23 22 21 25 25 C 1.40101 * 119.27041 * 359.74891 * 21 20 19 26 26 C 1.39369 * 119.74947 * 359.97314 * 25 21 20 27 27 C 1.47583 * 134.49230 * 359.97438 * 9 7 2 28 28 H 0.97007 * 119.99670 * 0.02562 * 1 2 3 29 29 H 1.08999 * 113.76752 * 41.05341 * 10 9 7 30 30 H 1.08994 * 113.76900 * 269.65391 * 10 9 7 31 31 H 1.09004 * 109.47342 * 185.87459 * 12 11 10 32 32 H 1.09005 * 109.47271 * 305.87419 * 12 11 10 33 33 H 1.09000 * 109.47226 * 295.76224 * 13 12 11 34 34 H 1.08996 * 109.47230 * 55.76923 * 13 12 11 35 35 H 0.96698 * 113.99528 * 180.02562 * 14 13 12 36 36 H 0.97005 * 119.99562 * 348.31467 * 15 11 10 37 37 H 1.08000 * 119.41391 * 359.97438 * 19 18 16 38 38 H 1.07994 * 122.05092 * 0.05115 * 22 21 20 39 39 H 1.08001 * 124.57848 * 180.02562 * 23 22 21 40 40 H 1.07994 * 120.73096 * 179.97438 * 26 25 21 41 41 H 1.09006 * 113.76510 * 90.34474 * 27 9 7 42 42 H 1.09001 * 113.77307 * 318.95437 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 3.7102 1.3463 0.0006 5 1 1.8916 2.3963 -1.2126 6 1 1.8915 2.3964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2023 0.0010 9 7 1.3254 -2.3881 0.0005 10 6 1.7199 -3.8102 0.0005 11 6 0.3468 -4.0829 0.6411 12 6 -0.3638 -5.3135 0.0742 13 6 0.4291 -6.5714 0.4345 14 8 -0.2843 -7.7275 -0.0091 15 7 0.3637 -4.0573 2.1057 16 6 -0.7957 -4.0441 2.7929 17 8 -1.8535 -3.9625 2.1990 18 6 -0.7812 -4.1288 4.2659 19 6 0.4304 -4.2290 4.9625 20 7 0.4567 -4.2991 6.2665 21 6 -0.6659 -4.2905 7.0147 22 6 -0.7850 -4.3649 8.4138 23 6 -2.0184 -4.3364 8.8912 24 16 -3.1889 -4.2101 7.5895 25 6 -1.9115 -4.1982 6.3799 26 6 -1.9750 -4.1162 4.9901 27 6 -0.1035 -2.7573 0.0005 28 1 -0.4850 0.8401 -0.0004 29 1 2.5622 -4.0324 0.6557 30 1 1.8315 -4.2351 -0.9969 31 1 -1.3659 -5.3818 0.4978 32 1 -0.4331 -5.2258 -1.0101 33 1 1.4042 -6.5378 -0.0513 34 1 0.5628 -6.6195 1.5152 35 1 0.1607 -8.5634 0.1868 36 1 1.2093 -4.0499 2.5810 37 1 1.3592 -4.2444 4.4117 38 1 0.0776 -4.4402 9.0592 39 1 -2.2709 -4.3844 9.9402 40 1 -2.9265 -4.0449 4.4844 41 1 -0.5273 -2.8731 -0.9971 42 1 -0.7171 -2.1389 0.6556 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001570762654.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:50:42 Heat of formation + Delta-G solvation = 10.253732 kcal Electronic energy + Delta-G solvation = -27917.369503 eV Core-core repulsion = 23990.054040 eV Total energy + Delta-G solvation = -3927.315463 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.109 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.98019 -41.06122 -39.23291 -37.66393 -36.72540 -35.23205 -33.86584 -33.65004 -32.21660 -30.75313 -28.90624 -26.81586 -26.34040 -25.22614 -24.66732 -23.17441 -22.75947 -21.72872 -20.34004 -19.65766 -18.77003 -18.36225 -17.91473 -17.80000 -17.17380 -16.95421 -16.50116 -16.33578 -15.94270 -15.61978 -15.57826 -15.12002 -15.05066 -14.99736 -14.63558 -14.31929 -14.16839 -13.94842 -13.64422 -13.30099 -13.07443 -12.96154 -12.85784 -12.75333 -12.43121 -12.34262 -12.10831 -11.81565 -11.69207 -11.60526 -11.46581 -11.12053 -10.91150 -10.78391 -10.53944 -10.09909 -9.81979 -9.07779 -8.92596 -7.88464 -5.23636 -0.95456 -0.13809 0.28227 0.81551 0.85633 1.44650 1.45387 1.55619 1.85966 2.03021 2.46158 2.66943 2.93884 3.14526 3.30552 3.45574 3.48765 3.55675 3.64893 3.68359 3.93091 4.04852 4.17542 4.34973 4.39175 4.45669 4.52147 4.64772 4.71709 4.72356 4.77527 4.85746 4.90302 4.96398 5.05302 5.18121 5.24430 5.27680 5.32793 5.52070 5.72713 5.92751 6.50518 6.59731 6.89541 6.97686 7.18943 7.61881 8.54373 9.27510 Molecular weight = 347.11amu Principal moments of inertia in cm(-1) A = 0.009286 B = 0.003493 C = 0.002806 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3014.561696 B = 8013.730100 C = 9976.502756 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.955 5.955 2 C -0.069 4.069 3 Si 0.975 3.025 4 H -0.258 1.258 5 H -0.297 1.297 6 H -0.298 1.298 7 C -0.225 4.225 8 H 0.094 0.906 9 N -0.633 5.633 10 C 0.128 3.872 11 C 0.152 3.848 12 C -0.113 4.113 13 C 0.089 3.911 14 O -0.594 6.594 15 N -0.677 5.677 16 C 0.566 3.434 17 O -0.566 6.566 18 C -0.188 4.188 19 C 0.165 3.835 20 N -0.475 5.475 21 C 0.132 3.868 22 C -0.140 4.140 23 C -0.138 4.138 24 S 0.141 5.859 25 C -0.234 4.234 26 C 0.022 3.978 27 C 0.161 3.839 28 H 0.244 0.756 29 H 0.082 0.918 30 H 0.068 0.932 31 H 0.058 0.942 32 H 0.073 0.927 33 H 0.069 0.931 34 H 0.051 0.949 35 H 0.397 0.603 36 H 0.412 0.588 37 H 0.189 0.811 38 H 0.175 0.825 39 H 0.220 0.780 40 H 0.146 0.854 41 H 0.014 0.986 42 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.159 -15.985 17.473 23.682 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.604 5.604 2 C -0.262 4.262 3 Si 0.804 3.196 4 H -0.181 1.181 5 H -0.225 1.225 6 H -0.225 1.225 7 C -0.354 4.354 8 H 0.112 0.888 9 N -0.359 5.359 10 C 0.004 3.996 11 C 0.064 3.936 12 C -0.152 4.152 13 C 0.012 3.988 14 O -0.403 6.403 15 N -0.328 5.328 16 C 0.354 3.646 17 O -0.446 6.446 18 C -0.196 4.196 19 C -0.008 4.008 20 N -0.184 5.184 21 C -0.002 4.002 22 C -0.170 4.170 23 C -0.274 4.274 24 S 0.404 5.596 25 C -0.351 4.351 26 C -0.008 4.008 27 C 0.034 3.966 28 H 0.053 0.947 29 H 0.100 0.900 30 H 0.086 0.914 31 H 0.077 0.923 32 H 0.092 0.908 33 H 0.087 0.913 34 H 0.070 0.930 35 H 0.247 0.753 36 H 0.250 0.750 37 H 0.206 0.794 38 H 0.192 0.808 39 H 0.237 0.763 40 H 0.164 0.836 41 H 0.032 0.968 42 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -1.728 -15.156 17.374 23.120 hybrid contribution 1.351 1.136 -0.713 1.904 sum -0.377 -14.020 16.661 21.778 Atomic orbital electron populations 1.70086 1.06716 1.25166 1.58415 1.25633 0.96303 1.00995 1.03284 0.85056 0.78599 0.79674 0.76290 1.18141 1.22471 1.22546 1.19472 0.90976 0.82896 1.42025 0.88849 1.46264 1.02763 1.00737 1.86167 1.23059 0.94124 0.83601 0.98854 1.21851 0.98055 0.93807 0.79932 1.21586 0.99967 0.92532 1.01142 1.22038 0.94384 0.84086 0.98326 1.86446 1.52155 1.17559 1.84148 1.45220 1.08304 1.73492 1.05744 1.18054 0.83997 0.75937 0.86659 1.90768 1.31987 1.50869 1.71000 1.20795 0.95913 1.09367 0.93545 1.23145 0.97235 0.91009 0.89381 1.67635 1.29816 1.13700 1.07216 1.19837 0.87596 0.97455 0.95296 1.19865 1.00090 1.05799 0.91221 1.25964 0.94418 1.02022 1.05002 1.84348 1.05955 1.75470 0.93788 1.23747 1.00334 1.12310 0.98680 1.21052 0.99078 0.89731 0.90931 1.22399 0.87558 0.90949 0.95646 0.94744 0.90023 0.91408 0.92291 0.90823 0.91254 0.93049 0.75336 0.75021 0.79391 0.80800 0.76294 0.83629 0.96783 0.94645 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.83 11.38 21.65 0.25 -59.59 16 2 C -0.07 -3.98 5.50 84.86 0.47 -3.51 16 3 Si 0.97 46.10 29.55 68.60 2.03 48.13 16 4 H -0.26 -11.11 7.11 99.48 0.71 -10.40 16 5 H -0.30 -14.25 7.11 99.48 0.71 -13.55 16 6 H -0.30 -14.30 7.11 99.48 0.71 -13.59 16 7 C -0.23 -12.24 10.70 84.03 0.90 -11.34 16 8 H 0.09 4.71 7.83 -2.91 -0.02 4.69 16 9 N -0.63 -31.15 3.70 -716.04 -2.65 -33.80 16 10 C 0.13 4.52 7.63 86.48 0.66 5.18 16 11 C 0.15 5.51 0.60 5.36 0.00 5.51 16 12 C -0.11 -3.72 4.92 30.59 0.15 -3.57 16 13 C 0.09 2.15 6.81 71.98 0.49 2.64 16 14 O -0.59 -14.39 13.66 -148.98 -2.04 -16.42 16 15 N -0.68 -22.10 4.86 -430.63 -2.09 -24.19 16 16 C 0.57 20.40 7.36 86.70 0.64 21.04 16 17 O -0.57 -24.91 14.42 -4.01 -0.06 -24.97 16 18 C -0.19 -5.67 5.89 -20.03 -0.12 -5.79 16 19 C 0.16 4.23 10.69 85.33 0.91 5.15 16 20 N -0.48 -12.52 10.39 -188.73 -1.96 -14.48 16 21 C 0.13 3.22 6.97 39.70 0.28 3.49 16 22 C -0.14 -2.32 10.16 21.79 0.22 -2.10 16 23 C -0.14 -1.63 11.08 66.76 0.74 -0.89 16 24 S 0.14 2.40 23.29 -56.49 -1.32 1.08 16 25 C -0.23 -5.81 6.49 22.99 0.15 -5.66 16 26 C 0.02 0.64 9.73 22.88 0.22 0.86 16 27 C 0.16 8.07 6.49 86.48 0.56 8.63 16 28 H 0.24 15.02 8.31 -92.70 -0.77 14.25 16 29 H 0.08 2.36 8.08 -2.39 -0.02 2.34 16 30 H 0.07 2.22 8.10 -2.39 -0.02 2.20 16 31 H 0.06 2.27 6.53 -2.39 -0.02 2.26 16 32 H 0.07 2.48 8.06 -2.38 -0.02 2.46 16 33 H 0.07 1.37 7.77 -2.39 -0.02 1.35 16 34 H 0.05 1.14 7.84 -2.39 -0.02 1.12 16 35 H 0.40 5.21 9.12 -74.06 -0.68 4.53 16 36 H 0.41 10.80 6.71 -92.70 -0.62 10.18 16 37 H 0.19 3.69 6.42 -2.91 -0.02 3.67 16 38 H 0.17 2.13 8.06 -2.91 -0.02 2.10 16 39 H 0.22 0.67 8.06 -2.91 -0.02 0.65 16 40 H 0.15 4.28 7.72 -2.91 -0.02 4.26 16 41 H 0.01 0.76 8.04 -2.38 -0.02 0.74 16 42 H 0.04 2.10 6.85 -2.39 -0.02 2.09 16 Total: -1.00 -81.47 367.09 -1.77 -83.24 By element: Atomic # 1 Polarization: 21.56 SS G_CDS: -0.20 Total: 21.35 kcal Atomic # 6 Polarization: 13.37 SS G_CDS: 6.27 Total: 19.65 kcal Atomic # 7 Polarization: -125.60 SS G_CDS: -6.46 Total: -132.06 kcal Atomic # 8 Polarization: -39.30 SS G_CDS: -2.09 Total: -41.39 kcal Atomic # 14 Polarization: 46.10 SS G_CDS: 2.03 Total: 48.13 kcal Atomic # 16 Polarization: 2.40 SS G_CDS: -1.32 Total: 1.08 kcal Total: -81.47 -1.77 -83.24 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001570762654.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.491 kcal (2) G-P(sol) polarization free energy of solvation -81.468 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.023 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.769 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.237 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.254 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds