Wall clock time and date at job start Wed Apr 1 2020 04:47:03
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31624 * 1
3 3 Si 1.86799 * 119.99995 * 2 1
4 4 H 1.48504 * 109.47148 * 270.00125 * 3 2 1
5 5 H 1.48493 * 109.47286 * 30.00432 * 3 2 1
6 6 H 1.48499 * 109.46873 * 150.00415 * 3 2 1
7 7 C 1.38814 * 119.99655 * 180.02562 * 2 1 3
8 8 H 1.08004 * 119.99501 * 179.97438 * 7 2 1
9 9 N 1.36934 * 120.00038 * 359.97438 * 7 2 1
10 10 C 1.46505 * 119.99824 * 179.97438 * 9 7 2
11 11 C 1.52999 * 109.46976 * 179.97438 * 10 9 7
12 12 H 1.09001 * 112.84829 * 43.80621 * 11 10 9
13 13 C 1.53784 * 113.61281 * 175.00132 * 11 10 9
14 14 C 1.53781 * 87.08156 * 139.98226 * 13 11 10
15 15 H 1.09001 * 113.61730 * 219.93874 * 14 13 11
16 16 N 1.46497 * 113.61313 * 89.11485 * 14 13 11
17 17 C 1.34774 * 119.99704 * 154.99929 * 16 14 13
18 18 O 1.21732 * 120.00112 * 0.02562 * 17 16 14
19 19 C 1.46425 * 119.99758 * 180.02562 * 17 16 14
20 20 C 1.36816 * 125.99755 * 180.02562 * 19 17 16
21 21 N 1.30357 * 115.31133 * 179.78312 * 20 19 17
22 22 C 1.30924 * 117.32065 * 0.45718 * 21 20 19
23 23 C 1.46860 * 125.29166 * 179.83902 * 22 21 20
24 24 C 1.36427 * 125.97268 * 359.68489 * 23 22 21
25 25 C 1.40620 * 106.71362 * 179.97438 * 24 23 22
26 26 C 1.34948 * 107.09357 * 0.24945 * 25 24 23
27 27 O 1.34167 * 108.74716 * 359.60035 * 26 25 24
28 28 S 1.76125 * 109.42010 * 359.56752 * 22 21 20
29 29 C 1.53776 * 113.61443 * 272.49800 * 11 10 9
30 30 H 0.96997 * 119.99346 * 359.97438 * 1 2 3
31 31 H 0.96993 * 120.00367 * 0.02562 * 9 7 2
32 32 H 1.09003 * 109.46537 * 59.99840 * 10 9 7
33 33 H 1.08998 * 109.47051 * 300.00273 * 10 9 7
34 34 H 1.09000 * 113.61138 * 25.43435 * 13 11 10
35 35 H 1.08997 * 113.61233 * 254.53507 * 13 11 10
36 36 H 0.97003 * 120.00309 * 335.00481 * 16 14 13
37 37 H 1.08003 * 122.34794 * 0.02562 * 20 19 17
38 38 H 1.07993 * 126.64144 * 359.97438 * 24 23 22
39 39 H 1.08002 * 126.44903 * 179.97438 * 25 24 23
40 40 H 1.08000 * 125.62758 * 179.75427 * 26 25 24
41 41 H 1.08997 * 113.61760 * 105.47405 * 29 11 10
42 42 H 1.09005 * 113.61791 * 334.56895 * 29 11 10
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3162 0.0000 0.0000
3 14 2.2502 1.6177 0.0000
4 1 2.4977 2.0464 -1.4001
5 1 1.4478 2.6526 0.7001
6 1 3.5478 1.4401 0.7000
7 6 2.0102 -1.2022 -0.0005
8 1 3.0903 -1.2022 -0.0010
9 7 1.3255 -2.3880 -0.0005
10 6 2.0580 -3.6568 -0.0017
11 6 1.0637 -4.8197 -0.0008
12 1 0.2369 -4.6701 -0.6951
13 6 1.7302 -6.2001 -0.1246
14 6 0.7057 -6.7001 0.9076
15 1 1.1247 -7.3907 1.6394
16 7 -0.5384 -7.1907 0.3094
17 6 -1.2945 -8.0901 0.9695
18 8 -0.9439 -8.4945 2.0629
19 6 -2.5376 -8.5809 0.3715
20 6 -3.3951 -9.4889 0.9302
21 7 -4.4468 -9.7755 0.2153
22 6 -4.5642 -9.1816 -0.9456
23 6 -5.6716 -9.3768 -1.8903
24 6 -6.7406 -10.2053 -1.7118
25 6 -7.5466 -10.0780 -2.8570
26 6 -6.9378 -9.1933 -3.6742
27 8 -5.8096 -8.7682 -3.0855
28 16 -3.1918 -8.1063 -1.1948
29 6 0.6184 -5.2483 1.4073
30 1 -0.4849 0.8401 0.0004
31 1 0.3556 -2.3881 -0.0005
32 1 2.6853 -3.7149 0.8878
33 1 2.6840 -3.7142 -0.8921
34 1 2.7588 -6.2221 0.2351
35 1 1.6152 -6.6537 -1.1091
36 1 -0.8179 -6.8683 -0.5617
37 1 -3.2154 -9.9339 1.8978
38 1 -6.9310 -10.8367 -0.8565
39 1 -8.4755 -10.5947 -3.0486
40 1 -7.3003 -8.8775 -4.6413
41 1 -0.3942 -4.9337 1.6597
42 1 1.3431 -5.0102 2.1859
RHF calculation, no. of doubly occupied orbitals= 61
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001571181163.mol2 42
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 04:47:03
Heat of formation + Delta-G solvation = 64.636843 kcal
Electronic energy + Delta-G solvation = -25930.245589 eV
Core-core repulsion = 22005.288355 eV
Total energy + Delta-G solvation = -3924.957234 eV
No. of doubly occupied orbitals = 61
Molecular weight
(most abundant/longest-lived isotopes) = 347.109 amu
Computer time = 0.62 seconds
Orbital eigenvalues (eV)
-43.09210 -40.53056 -39.69564 -38.22529 -34.59321 -33.67983 -33.32524 -32.10534
-30.88798 -29.48958 -26.97419 -26.08185 -25.54985 -23.72620 -22.84531 -22.07585
-21.89151 -21.41950 -19.90012 -19.27037 -19.13540 -17.62728 -17.06812 -16.90626
-16.73099 -16.22742 -15.56785 -15.42980 -14.89591 -14.74200 -14.48020 -14.40273
-14.02334 -13.87044 -13.45892 -13.40062 -13.34667 -13.07681 -12.80405 -12.42055
-12.18706 -11.95314 -11.71151 -11.05123 -10.83455 -10.63379 -10.60666 -10.48148
-10.38035 -10.21909 -10.16704 -10.11313 -9.86196 -9.85144 -9.62759 -9.16165
-8.85061 -8.51220 -6.90278 -5.75800 -3.04045 -0.57796 0.59145 1.06261
1.13904 1.93331 2.01824 2.38583 2.82101 2.90751 3.43735 3.48763
3.50650 3.79632 4.29882 4.43757 4.48363 4.54450 4.57351 4.63772
4.77261 4.80489 5.06465 5.09538 5.17879 5.32165 5.43871 5.58170
5.61475 5.64628 5.81398 5.87822 5.89939 5.94677 6.07333 6.18016
6.25220 6.39131 6.41371 6.55791 6.77034 6.91156 7.04534 7.22488
7.70444 7.87652 8.43423 9.54356 10.13369 10.47727 11.47190
Molecular weight = 347.11amu
Principal moments of inertia in cm(-1)
A = 0.012520 B = 0.002058 C = 0.001835
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2235.805617 B =13601.811137 C =15253.587486
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.934 5.934
2 C -0.016 4.016
3 Si 0.907 3.093
4 H -0.290 1.290
5 H -0.292 1.292
6 H -0.282 1.282
7 C -0.238 4.238
8 H 0.070 0.930
9 N -0.732 5.732
10 C 0.162 3.838
11 C -0.115 4.115
12 H 0.087 0.913
13 C -0.138 4.138
14 C 0.115 3.885
15 H 0.104 0.896
16 N -0.701 5.701
17 C 0.599 3.401
18 O -0.523 6.523
19 C -0.286 4.286
20 C 0.127 3.873
21 N -0.458 5.458
22 C 0.149 3.851
23 C 0.021 3.979
24 C -0.122 4.122
25 C -0.219 4.219
26 C -0.004 4.004
27 O -0.166 6.166
28 S 0.173 5.827
29 C -0.138 4.138
30 H 0.255 0.745
31 H 0.383 0.617
32 H 0.021 0.979
33 H 0.019 0.981
34 H 0.098 0.902
35 H 0.069 0.931
36 H 0.399 0.601
37 H 0.195 0.805
38 H 0.162 0.838
39 H 0.159 0.841
40 H 0.214 0.786
41 H 0.069 0.931
42 H 0.094 0.906
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -12.952 -24.795 -6.539 28.728
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.583 5.583
2 C -0.212 4.212
3 Si 0.738 3.262
4 H -0.218 1.218
5 H -0.218 1.218
6 H -0.208 1.208
7 C -0.370 4.370
8 H 0.088 0.912
9 N -0.376 5.376
10 C 0.035 3.965
11 C -0.133 4.133
12 H 0.105 0.895
13 C -0.176 4.176
14 C 0.010 3.990
15 H 0.122 0.878
16 N -0.352 5.352
17 C 0.384 3.616
18 O -0.401 6.401
19 C -0.410 4.410
20 C -0.032 4.032
21 N -0.172 5.172
22 C -0.121 4.121
23 C -0.032 4.032
24 C -0.147 4.147
25 C -0.239 4.239
26 C -0.074 4.074
27 O -0.061 6.061
28 S 0.433 5.567
29 C -0.177 4.177
30 H 0.064 0.936
31 H 0.217 0.783
32 H 0.039 0.961
33 H 0.036 0.964
34 H 0.116 0.884
35 H 0.088 0.912
36 H 0.234 0.766
37 H 0.212 0.788
38 H 0.180 0.820
39 H 0.177 0.823
40 H 0.231 0.769
41 H 0.088 0.912
42 H 0.112 0.888
Dipole moment (debyes) X Y Z Total
from point charges -12.335 -24.346 -6.521 28.061
hybrid contribution -0.102 0.778 0.292 0.837
sum -12.438 -23.568 -6.229 27.367
Atomic orbital electron populations
1.69664 1.05109 1.25595 1.57932 1.24750 0.95541 0.97712 1.03162
0.86183 0.78648 0.83851 0.77487 1.21755 1.21787 1.20777 1.19244
0.91030 0.84256 1.42443 0.91220 1.42345 1.05832 0.99993 1.89414
1.20636 0.92965 0.85166 0.97739 1.22778 0.99161 0.94320 0.97066
0.89479 1.23329 0.98942 0.96539 0.98797 1.22033 0.83792 0.96323
0.96833 0.87782 1.45593 1.23912 1.43489 1.22176 1.16554 0.81471
0.78901 0.84644 1.90863 1.71189 1.58464 1.19544 1.26044 1.04462
1.09760 1.00755 1.22284 0.86601 0.93942 1.00388 1.66360 1.22449
1.25085 1.03355 1.24215 0.96022 0.97962 0.93865 1.18545 0.96758
1.01272 0.86588 1.21998 0.92798 0.99724 1.00182 1.21901 1.03218
1.03558 0.95176 1.24418 0.85197 0.98257 0.99571 1.84073 1.39354
1.55524 1.27150 1.85144 1.16425 1.40135 1.14967 1.23426 1.02698
0.93718 0.97813 0.93558 0.78349 0.96125 0.96362 0.88383 0.91196
0.76606 0.78793 0.82012 0.82344 0.76936 0.91203 0.88788
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.93 -28.49 13.06 55.49 0.72 -27.76 16
2 C -0.02 -0.46 5.50 -17.43 -0.10 -0.56 16
3 Si 0.91 22.58 29.55 -169.99 -5.02 17.56 16
4 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16
5 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16
6 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16
7 C -0.24 -6.73 9.99 -15.06 -0.15 -6.88 16
8 H 0.07 1.91 7.83 -52.48 -0.41 1.50 16
9 N -0.73 -18.57 5.60 -59.90 -0.34 -18.91 16
10 C 0.16 3.20 6.10 -4.04 -0.02 3.18 16
11 C -0.11 -1.75 3.63 -89.81 -0.33 -2.08 16
12 H 0.09 1.37 8.14 -51.93 -0.42 0.94 16
13 C -0.14 -1.63 7.39 -25.92 -0.19 -1.82 16
14 C 0.11 1.44 4.32 -67.12 -0.29 1.15 16
15 H 0.10 1.34 7.46 -51.93 -0.39 0.95 16
16 N -0.70 -8.36 5.26 -54.40 -0.29 -8.65 16
17 C 0.60 7.85 7.78 -12.97 -0.10 7.75 16
18 O -0.52 -8.32 16.46 5.16 0.08 -8.23 16
19 C -0.29 -3.22 6.50 -36.80 -0.24 -3.46 16
20 C 0.13 1.37 11.04 -18.69 -0.21 1.17 16
21 N -0.46 -5.01 10.47 -11.00 -0.12 -5.13 16
22 C 0.15 1.55 7.44 -14.45 -0.11 1.45 16
23 C 0.02 0.20 7.21 -36.75 -0.26 -0.06 16
24 C -0.12 -0.95 10.79 -39.34 -0.42 -1.38 16
25 C -0.22 -1.24 10.88 -39.85 -0.43 -1.67 16
26 C 0.00 -0.02 12.08 29.56 0.36 0.34 16
27 O -0.17 -1.41 10.67 4.61 0.05 -1.37 16
28 S 0.17 1.69 22.52 -107.50 -2.42 -0.74 16
29 C -0.14 -2.03 7.43 -25.92 -0.19 -2.22 16
30 H 0.25 7.51 8.31 -40.82 -0.34 7.17 16
31 H 0.38 10.23 7.67 -40.82 -0.31 9.92 16
32 H 0.02 0.41 7.84 -51.93 -0.41 0.01 16
33 H 0.02 0.37 8.14 -51.93 -0.42 -0.06 16
34 H 0.10 1.08 8.10 -51.93 -0.42 0.66 16
35 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16
36 H 0.40 4.16 7.86 -40.82 -0.32 3.84 16
37 H 0.20 1.81 8.06 -52.48 -0.42 1.39 16
38 H 0.16 1.11 8.06 -52.49 -0.42 0.69 16
39 H 0.16 0.49 8.06 -52.49 -0.42 0.07 16
40 H 0.21 0.27 8.06 -52.49 -0.42 -0.15 16
41 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16
42 H 0.09 1.39 7.90 -51.93 -0.41 0.98 16
LS Contribution 380.77 15.07 5.74 5.74
Total: -1.00 -34.33 380.77 -9.46 -43.79
By element:
Atomic # 1 Polarization: 14.00 SS G_CDS: -5.19 Total: 8.81 kcal
Atomic # 6 Polarization: -2.42 SS G_CDS: -2.69 Total: -5.11 kcal
Atomic # 7 Polarization: -60.44 SS G_CDS: -0.01 Total: -60.45 kcal
Atomic # 8 Polarization: -9.73 SS G_CDS: 0.13 Total: -9.60 kcal
Atomic # 14 Polarization: 22.58 SS G_CDS: -5.02 Total: 17.56 kcal
Atomic # 16 Polarization: 1.69 SS G_CDS: -2.42 Total: -0.74 kcal
Total LS contribution 5.74 Total: 5.74 kcal
Total: -34.33 -9.46 -43.79 kcal
The number of atoms in the molecule is 42
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001571181163.mol2 42
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 108.427 kcal
(2) G-P(sol) polarization free energy of solvation -34.326 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.101 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.464 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.790 kcal
(6) G-S(sol) free energy of system = (1) + (5) 64.637 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.62 seconds