Wall clock time and date at job start Wed Apr 1 2020 04:19:21
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31621 * 1
3 3 Si 1.86800 * 120.00591 * 2 1
4 4 H 1.48494 * 109.47392 * 180.27521 * 3 2 1
5 5 H 1.48501 * 109.47018 * 300.27993 * 3 2 1
6 6 H 1.48503 * 109.46570 * 60.27564 * 3 2 1
7 7 C 1.38734 * 119.99697 * 180.27876 * 2 1 3
8 8 H 1.07999 * 120.00481 * 179.72424 * 7 2 1
9 9 S 1.76205 * 119.99668 * 359.72412 * 7 2 1
10 10 C 1.76208 * 99.99586 * 174.88862 * 9 7 2
11 11 C 1.39218 * 120.01782 * 274.26480 * 10 9 7
12 12 C 1.38135 * 120.19972 * 179.77013 * 11 10 9
13 13 C 1.38087 * 120.24611 * 0.51131 * 12 11 10
14 14 C 1.39635 * 120.03491 * 359.74321 * 13 12 11
15 15 C 1.47855 * 120.10157 * 179.97438 * 14 13 12
16 16 O 1.21555 * 120.00176 * 180.02562 * 15 14 13
17 17 N 1.34779 * 120.00198 * 0.02579 * 15 14 13
18 18 C 1.46499 * 120.00434 * 179.97438 * 17 15 14
19 19 C 1.52997 * 109.47495 * 180.02562 * 18 17 15
20 20 C 1.52996 * 109.47385 * 179.97438 * 19 18 17
21 21 C 1.53003 * 109.47085 * 179.97438 * 20 19 18
22 22 H 1.08999 * 110.53912 * 305.70144 * 21 20 19
23 23 C 1.51441 * 110.60856 * 68.55425 * 21 20 19
24 24 N 1.27913 * 106.97772 * 118.45576 * 23 21 20
25 25 N 1.39152 * 113.21631 * 0.14925 * 24 23 21
26 26 C 1.34956 * 111.12125 * 359.89572 * 25 24 23
27 27 O 1.21301 * 127.49856 * 180.02562 * 26 25 24
28 28 C 1.38834 * 120.01802 * 94.54477 * 10 9 7
29 29 H 0.97007 * 119.99302 * 359.72198 * 1 2 3
30 30 H 1.08003 * 119.89955 * 0.02703 * 11 10 9
31 31 H 1.08001 * 119.88097 * 180.28016 * 12 11 10
32 32 H 1.07997 * 119.98352 * 179.72221 * 13 12 11
33 33 H 0.97001 * 119.99432 * 0.02562 * 17 15 14
34 34 H 1.09006 * 109.46698 * 300.00407 * 18 17 15
35 35 H 1.08998 * 109.46755 * 59.99724 * 18 17 15
36 36 H 1.08998 * 109.47067 * 300.00452 * 19 18 17
37 37 H 1.09006 * 109.46848 * 59.99970 * 19 18 17
38 38 H 1.09000 * 109.47101 * 299.99635 * 20 19 18
39 39 H 1.08997 * 109.47186 * 59.99945 * 20 19 18
40 40 H 1.07999 * 126.41372 * 298.47818 * 23 21 20
41 41 H 0.96998 * 124.44006 * 179.88385 * 25 24 23
42 42 H 1.07993 * 120.12391 * 359.97438 * 28 10 9
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3162 0.0000 0.0000
3 14 2.2504 1.6176 0.0000
4 1 3.7103 1.3462 -0.0067
5 1 1.8866 2.3993 -1.2091
6 1 1.8967 2.3934 1.2159
7 6 2.0098 -1.2015 -0.0058
8 1 3.0898 -1.2016 -0.0103
9 16 1.1286 -2.7274 -0.0059
10 6 2.4718 -3.8562 -0.1689
11 6 2.9625 -4.1772 -1.4316
12 6 4.0184 -5.0580 -1.5634
13 6 4.5874 -5.6342 -0.4449
14 6 4.0997 -5.3234 0.8261
15 6 4.7075 -5.9399 2.0247
16 8 4.2813 -5.6685 3.1302
17 7 5.7343 -6.8028 1.8916
18 6 6.3369 -7.4133 3.0792
19 6 7.4734 -8.3447 2.6530
20 6 8.1031 -8.9817 3.8933
21 6 9.2392 -9.9136 3.4670
22 1 8.8834 -10.6419 2.7382
23 6 10.3982 -9.1181 2.9035
24 7 11.4073 -9.3440 3.6564
25 7 11.1256 -10.2147 4.7046
26 6 9.8367 -10.6133 4.6728
27 8 9.2775 -11.3668 5.4416
28 6 3.0375 -4.4305 0.9614
29 1 -0.4849 0.8402 0.0041
30 1 2.5190 -3.7330 -2.3105
31 1 4.3979 -5.2999 -2.5452
32 1 5.4098 -6.3257 -0.5532
33 1 6.0746 -7.0191 1.0094
34 1 6.7320 -6.6319 3.7284
35 1 5.5806 -7.9847 3.6173
36 1 7.0786 -9.1260 2.0035
37 1 8.2295 -7.7727 2.1151
38 1 8.4981 -8.2001 4.5423
39 1 7.3472 -9.5535 4.4316
40 1 10.3748 -8.4813 2.0316
41 1 11.7712 -10.4982 5.3708
42 1 2.6562 -4.1865 1.9419
RHF calculation, no. of doubly occupied orbitals= 61
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001585937893.mol2 42
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 04:19:21
Heat of formation + Delta-G solvation = -4.029505 kcal
Electronic energy + Delta-G solvation = -25489.660405 eV
Core-core repulsion = 21561.725575 eV
Total energy + Delta-G solvation = -3927.934830 eV
No. of doubly occupied orbitals = 61
Molecular weight
(most abundant/longest-lived isotopes) = 347.109 amu
Computer time = 0.64 seconds
Orbital eigenvalues (eV)
-41.88276 -40.00350 -38.03294 -37.92905 -36.37037 -34.12778 -32.52431 -31.81429
-31.04534 -30.57138 -29.44248 -25.69960 -25.56380 -23.49577 -22.82701 -22.20582
-21.62937 -21.39031 -20.34466 -18.40322 -18.32007 -17.39891 -16.81824 -16.34552
-15.94986 -15.77891 -15.66532 -15.31959 -15.04824 -14.86740 -14.86139 -14.36750
-14.30031 -13.78509 -13.50765 -13.38892 -13.03558 -12.89459 -12.78573 -12.63844
-12.26210 -11.91930 -11.66371 -11.57509 -11.21866 -11.17174 -11.14981 -11.10989
-10.72798 -10.37635 -9.99571 -9.81471 -9.71847 -9.25044 -9.18325 -9.04021
-8.61566 -8.04561 -6.73036 -6.30418 -4.04288 0.94223 1.13190 1.63376
1.99699 2.10479 2.96024 3.01556 3.17991 3.20336 3.26156 3.28031
3.45788 3.54622 4.02717 4.06257 4.20674 4.24065 4.48458 4.59261
4.72279 4.79625 4.91371 5.03764 5.07227 5.10395 5.14492 5.20373
5.32514 5.41685 5.45969 5.61982 5.65259 5.74055 5.84237 5.96463
6.02607 6.21636 6.27613 6.54357 6.61034 6.88441 6.90906 7.15873
7.31724 7.41968 7.56086 8.23474 8.31219 9.15523 10.76387
Molecular weight = 347.11amu
Principal moments of inertia in cm(-1)
A = 0.020257 B = 0.001644 C = 0.001616
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1381.892422 B =17032.197891 C =17323.075049
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.870 5.870
2 C 0.073 3.927
3 Si 0.921 3.079
4 H -0.271 1.271
5 H -0.279 1.279
6 H -0.279 1.279
7 C -0.520 4.520
8 H 0.076 0.924
9 S -0.035 6.035
10 C -0.106 4.106
11 C -0.054 4.054
12 C -0.141 4.141
13 C -0.090 4.090
14 C -0.155 4.155
15 C 0.564 3.436
16 O -0.534 6.534
17 N -0.733 5.733
18 C 0.119 3.881
19 C -0.131 4.131
20 C -0.089 4.089
21 C -0.148 4.148
22 H 0.140 0.860
23 C 0.082 3.918
24 N -0.234 5.234
25 N -0.577 5.577
26 C 0.501 3.499
27 O -0.494 6.494
28 C -0.020 4.020
29 H 0.269 0.731
30 H 0.131 0.869
31 H 0.123 0.877
32 H 0.117 0.883
33 H 0.399 0.601
34 H 0.069 0.931
35 H 0.070 0.930
36 H 0.077 0.923
37 H 0.076 0.924
38 H 0.075 0.925
39 H 0.087 0.913
40 H 0.214 0.786
41 H 0.435 0.565
42 H 0.139 0.861
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 20.812 -19.647 0.426 28.624
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.505 5.505
2 C -0.136 4.136
3 Si 0.747 3.253
4 H -0.195 1.195
5 H -0.205 1.205
6 H -0.204 1.204
7 C -0.667 4.667
8 H 0.095 0.905
9 S 0.199 5.801
10 C -0.217 4.217
11 C -0.075 4.075
12 C -0.161 4.161
13 C -0.109 4.109
14 C -0.160 4.160
15 C 0.352 3.648
16 O -0.411 6.411
17 N -0.387 5.387
18 C -0.005 4.005
19 C -0.168 4.168
20 C -0.128 4.128
21 C -0.172 4.172
22 H 0.157 0.843
23 C -0.133 4.133
24 N -0.039 5.039
25 N -0.325 5.325
26 C 0.287 3.713
27 O -0.365 6.365
28 C -0.041 4.041
29 H 0.079 0.921
30 H 0.149 0.851
31 H 0.141 0.859
32 H 0.135 0.865
33 H 0.235 0.765
34 H 0.087 0.913
35 H 0.088 0.912
36 H 0.096 0.904
37 H 0.095 0.905
38 H 0.094 0.906
39 H 0.105 0.895
40 H 0.230 0.770
41 H 0.280 0.720
42 H 0.157 0.843
Dipole moment (debyes) X Y Z Total
from point charges 19.794 -19.780 2.004 28.055
hybrid contribution 1.703 0.733 -0.404 1.897
sum 21.497 -19.047 1.600 28.766
Atomic orbital electron populations
1.69999 1.05897 1.27567 1.47051 1.25007 0.95132 0.99121 0.94367
0.86063 0.79709 0.81540 0.77966 1.19503 1.20483 1.20438 1.22881
0.94916 0.90161 1.58762 0.90549 1.83638 1.04146 0.97171 1.95126
1.22855 1.02934 1.01947 0.93972 1.22012 0.93883 0.93963 0.97648
1.21071 0.97848 0.99039 0.98160 1.21122 0.98872 0.98975 0.91910
1.19841 1.00753 1.02934 0.92473 1.18409 0.79101 0.78184 0.89097
1.90783 1.61927 1.61358 1.27007 1.45852 1.35902 1.47041 1.09912
1.21289 0.94955 0.96170 0.88079 1.21824 0.97875 0.99295 0.97855
1.21204 0.95377 0.97831 0.98397 1.21942 0.97490 0.99892 0.97873
0.84272 1.27223 0.89652 0.97697 0.98687 1.74874 1.26281 1.05246
0.97466 1.47660 1.12136 1.44568 1.28170 1.21342 0.82866 0.80904
0.86233 1.90844 1.66273 1.34773 1.44589 1.21919 0.91376 0.91291
0.99549 0.92101 0.85074 0.85859 0.86497 0.76544 0.91277 0.91192
0.90385 0.90513 0.90610 0.89464 0.76995 0.71972 0.84303
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.87 -25.20 13.22 55.49 0.73 -24.47 16
2 C 0.07 2.02 5.49 -17.46 -0.10 1.92 16
3 Si 0.92 21.19 29.55 -169.99 -5.02 16.16 16
4 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16
5 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16
6 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16
7 C -0.52 -14.51 9.46 30.92 0.29 -14.21 16
8 H 0.08 2.11 7.79 -52.49 -0.41 1.70 16
9 S -0.04 -0.90 21.41 -107.50 -2.30 -3.20 16
10 C -0.11 -2.23 5.45 -39.00 -0.21 -2.44 16
11 C -0.05 -0.95 9.79 -39.26 -0.38 -1.33 16
12 C -0.14 -1.92 10.02 -39.67 -0.40 -2.32 16
13 C -0.09 -1.12 9.54 -39.12 -0.37 -1.50 16
14 C -0.16 -2.45 5.87 -105.00 -0.62 -3.07 16
15 C 0.56 8.39 7.77 -12.32 -0.10 8.30 16
16 O -0.53 -10.09 16.34 5.32 0.09 -10.00 16
17 N -0.73 -6.97 5.51 -61.25 -0.34 -7.31 16
18 C 0.12 0.91 5.67 -4.04 -0.02 0.89 16
19 C -0.13 -0.43 5.19 -26.73 -0.14 -0.57 16
20 C -0.09 -0.37 4.74 -26.73 -0.13 -0.50 16
21 C -0.15 -0.58 3.04 -92.08 -0.28 -0.86 16
22 H 0.14 0.32 8.14 -51.93 -0.42 -0.10 16
23 C 0.08 0.23 11.17 -13.55 -0.15 0.08 16
24 N -0.23 -1.29 12.22 32.83 0.40 -0.89 16
25 N -0.58 -3.54 7.13 31.51 0.22 -3.31 16
26 C 0.50 3.78 8.26 -10.42 -0.09 3.70 16
27 O -0.49 -5.63 18.03 5.54 0.10 -5.53 16
28 C -0.02 -0.39 9.34 -38.92 -0.36 -0.75 16
29 H 0.27 7.25 8.31 -40.82 -0.34 6.91 16
30 H 0.13 2.24 8.06 -52.48 -0.42 1.82 16
31 H 0.12 1.26 8.06 -52.49 -0.42 0.83 16
32 H 0.12 0.93 6.39 -52.49 -0.34 0.60 16
33 H 0.40 2.54 6.50 -40.82 -0.27 2.27 16
34 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16
35 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16
36 H 0.08 0.18 8.14 -51.93 -0.42 -0.24 16
37 H 0.08 0.12 7.33 -51.93 -0.38 -0.26 16
38 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16
39 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16
40 H 0.21 -0.19 7.73 -52.49 -0.41 -0.59 16
41 H 0.44 2.01 8.96 -183.31 -1.64 0.36 16
42 H 0.14 2.92 7.65 -52.49 -0.40 2.52 16
LS Contribution 381.19 15.07 5.74 5.74
Total: -1.00 -37.00 381.19 -9.78 -46.78
By element:
Atomic # 1 Polarization: 5.04 SS G_CDS: -6.36 Total: -1.32 kcal
Atomic # 6 Polarization: -9.61 SS G_CDS: -3.05 Total: -12.66 kcal
Atomic # 7 Polarization: -37.00 SS G_CDS: 1.02 Total: -35.97 kcal
Atomic # 8 Polarization: -15.72 SS G_CDS: 0.19 Total: -15.53 kcal
Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.16 kcal
Atomic # 16 Polarization: -0.90 SS G_CDS: -2.30 Total: -3.20 kcal
Total LS contribution 5.74 Total: 5.74 kcal
Total: -37.00 -9.78 -46.78 kcal
The number of atoms in the molecule is 42
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001585937893.mol2 42
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 42.748 kcal
(2) G-P(sol) polarization free energy of solvation -36.995 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.753 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.782 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.777 kcal
(6) G-S(sol) free energy of system = (1) + (5) -4.030 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.64 seconds