Wall clock time and date at job start Wed Apr 1 2020 04:19:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86800 * 120.00591 * 2 1 4 4 H 1.48494 * 109.47392 * 180.27521 * 3 2 1 5 5 H 1.48501 * 109.47018 * 300.27993 * 3 2 1 6 6 H 1.48503 * 109.46570 * 60.27564 * 3 2 1 7 7 C 1.38734 * 119.99697 * 180.27876 * 2 1 3 8 8 H 1.07999 * 120.00481 * 179.72424 * 7 2 1 9 9 S 1.76205 * 119.99668 * 359.72412 * 7 2 1 10 10 C 1.76208 * 99.99586 * 174.88862 * 9 7 2 11 11 C 1.39218 * 120.01782 * 274.26480 * 10 9 7 12 12 C 1.38135 * 120.19972 * 179.77013 * 11 10 9 13 13 C 1.38087 * 120.24611 * 0.51131 * 12 11 10 14 14 C 1.39635 * 120.03491 * 359.74321 * 13 12 11 15 15 C 1.47855 * 120.10157 * 179.97438 * 14 13 12 16 16 O 1.21555 * 120.00176 * 180.02562 * 15 14 13 17 17 N 1.34779 * 120.00198 * 0.02579 * 15 14 13 18 18 C 1.46499 * 120.00434 * 179.97438 * 17 15 14 19 19 C 1.52997 * 109.47495 * 180.02562 * 18 17 15 20 20 C 1.52996 * 109.47385 * 179.97438 * 19 18 17 21 21 C 1.53003 * 109.47085 * 179.97438 * 20 19 18 22 22 H 1.08999 * 110.53912 * 305.70144 * 21 20 19 23 23 C 1.51441 * 110.60856 * 68.55425 * 21 20 19 24 24 N 1.27913 * 106.97772 * 118.45576 * 23 21 20 25 25 N 1.39152 * 113.21631 * 0.14925 * 24 23 21 26 26 C 1.34956 * 111.12125 * 359.89572 * 25 24 23 27 27 O 1.21301 * 127.49856 * 180.02562 * 26 25 24 28 28 C 1.38834 * 120.01802 * 94.54477 * 10 9 7 29 29 H 0.97007 * 119.99302 * 359.72198 * 1 2 3 30 30 H 1.08003 * 119.89955 * 0.02703 * 11 10 9 31 31 H 1.08001 * 119.88097 * 180.28016 * 12 11 10 32 32 H 1.07997 * 119.98352 * 179.72221 * 13 12 11 33 33 H 0.97001 * 119.99432 * 0.02562 * 17 15 14 34 34 H 1.09006 * 109.46698 * 300.00407 * 18 17 15 35 35 H 1.08998 * 109.46755 * 59.99724 * 18 17 15 36 36 H 1.08998 * 109.47067 * 300.00452 * 19 18 17 37 37 H 1.09006 * 109.46848 * 59.99970 * 19 18 17 38 38 H 1.09000 * 109.47101 * 299.99635 * 20 19 18 39 39 H 1.08997 * 109.47186 * 59.99945 * 20 19 18 40 40 H 1.07999 * 126.41372 * 298.47818 * 23 21 20 41 41 H 0.96998 * 124.44006 * 179.88385 * 25 24 23 42 42 H 1.07993 * 120.12391 * 359.97438 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2504 1.6176 0.0000 4 1 3.7103 1.3462 -0.0067 5 1 1.8866 2.3993 -1.2091 6 1 1.8967 2.3934 1.2159 7 6 2.0098 -1.2015 -0.0058 8 1 3.0898 -1.2016 -0.0103 9 16 1.1286 -2.7274 -0.0059 10 6 2.4718 -3.8562 -0.1689 11 6 2.9625 -4.1772 -1.4316 12 6 4.0184 -5.0580 -1.5634 13 6 4.5874 -5.6342 -0.4449 14 6 4.0997 -5.3234 0.8261 15 6 4.7075 -5.9399 2.0247 16 8 4.2813 -5.6685 3.1302 17 7 5.7343 -6.8028 1.8916 18 6 6.3369 -7.4133 3.0792 19 6 7.4734 -8.3447 2.6530 20 6 8.1031 -8.9817 3.8933 21 6 9.2392 -9.9136 3.4670 22 1 8.8834 -10.6419 2.7382 23 6 10.3982 -9.1181 2.9035 24 7 11.4073 -9.3440 3.6564 25 7 11.1256 -10.2147 4.7046 26 6 9.8367 -10.6133 4.6728 27 8 9.2775 -11.3668 5.4416 28 6 3.0375 -4.4305 0.9614 29 1 -0.4849 0.8402 0.0041 30 1 2.5190 -3.7330 -2.3105 31 1 4.3979 -5.2999 -2.5452 32 1 5.4098 -6.3257 -0.5532 33 1 6.0746 -7.0191 1.0094 34 1 6.7320 -6.6319 3.7284 35 1 5.5806 -7.9847 3.6173 36 1 7.0786 -9.1260 2.0035 37 1 8.2295 -7.7727 2.1151 38 1 8.4981 -8.2001 4.5423 39 1 7.3472 -9.5535 4.4316 40 1 10.3748 -8.4813 2.0316 41 1 11.7712 -10.4982 5.3708 42 1 2.6562 -4.1865 1.9419 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001585937893.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:19:21 Heat of formation + Delta-G solvation = -4.029505 kcal Electronic energy + Delta-G solvation = -25489.660405 eV Core-core repulsion = 21561.725575 eV Total energy + Delta-G solvation = -3927.934830 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.109 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.88276 -40.00350 -38.03294 -37.92905 -36.37037 -34.12778 -32.52431 -31.81429 -31.04534 -30.57138 -29.44248 -25.69960 -25.56380 -23.49577 -22.82701 -22.20582 -21.62937 -21.39031 -20.34466 -18.40322 -18.32007 -17.39891 -16.81824 -16.34552 -15.94986 -15.77891 -15.66532 -15.31959 -15.04824 -14.86740 -14.86139 -14.36750 -14.30031 -13.78509 -13.50765 -13.38892 -13.03558 -12.89459 -12.78573 -12.63844 -12.26210 -11.91930 -11.66371 -11.57509 -11.21866 -11.17174 -11.14981 -11.10989 -10.72798 -10.37635 -9.99571 -9.81471 -9.71847 -9.25044 -9.18325 -9.04021 -8.61566 -8.04561 -6.73036 -6.30418 -4.04288 0.94223 1.13190 1.63376 1.99699 2.10479 2.96024 3.01556 3.17991 3.20336 3.26156 3.28031 3.45788 3.54622 4.02717 4.06257 4.20674 4.24065 4.48458 4.59261 4.72279 4.79625 4.91371 5.03764 5.07227 5.10395 5.14492 5.20373 5.32514 5.41685 5.45969 5.61982 5.65259 5.74055 5.84237 5.96463 6.02607 6.21636 6.27613 6.54357 6.61034 6.88441 6.90906 7.15873 7.31724 7.41968 7.56086 8.23474 8.31219 9.15523 10.76387 Molecular weight = 347.11amu Principal moments of inertia in cm(-1) A = 0.020257 B = 0.001644 C = 0.001616 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1381.892422 B =17032.197891 C =17323.075049 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.870 5.870 2 C 0.073 3.927 3 Si 0.921 3.079 4 H -0.271 1.271 5 H -0.279 1.279 6 H -0.279 1.279 7 C -0.520 4.520 8 H 0.076 0.924 9 S -0.035 6.035 10 C -0.106 4.106 11 C -0.054 4.054 12 C -0.141 4.141 13 C -0.090 4.090 14 C -0.155 4.155 15 C 0.564 3.436 16 O -0.534 6.534 17 N -0.733 5.733 18 C 0.119 3.881 19 C -0.131 4.131 20 C -0.089 4.089 21 C -0.148 4.148 22 H 0.140 0.860 23 C 0.082 3.918 24 N -0.234 5.234 25 N -0.577 5.577 26 C 0.501 3.499 27 O -0.494 6.494 28 C -0.020 4.020 29 H 0.269 0.731 30 H 0.131 0.869 31 H 0.123 0.877 32 H 0.117 0.883 33 H 0.399 0.601 34 H 0.069 0.931 35 H 0.070 0.930 36 H 0.077 0.923 37 H 0.076 0.924 38 H 0.075 0.925 39 H 0.087 0.913 40 H 0.214 0.786 41 H 0.435 0.565 42 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.812 -19.647 0.426 28.624 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.505 5.505 2 C -0.136 4.136 3 Si 0.747 3.253 4 H -0.195 1.195 5 H -0.205 1.205 6 H -0.204 1.204 7 C -0.667 4.667 8 H 0.095 0.905 9 S 0.199 5.801 10 C -0.217 4.217 11 C -0.075 4.075 12 C -0.161 4.161 13 C -0.109 4.109 14 C -0.160 4.160 15 C 0.352 3.648 16 O -0.411 6.411 17 N -0.387 5.387 18 C -0.005 4.005 19 C -0.168 4.168 20 C -0.128 4.128 21 C -0.172 4.172 22 H 0.157 0.843 23 C -0.133 4.133 24 N -0.039 5.039 25 N -0.325 5.325 26 C 0.287 3.713 27 O -0.365 6.365 28 C -0.041 4.041 29 H 0.079 0.921 30 H 0.149 0.851 31 H 0.141 0.859 32 H 0.135 0.865 33 H 0.235 0.765 34 H 0.087 0.913 35 H 0.088 0.912 36 H 0.096 0.904 37 H 0.095 0.905 38 H 0.094 0.906 39 H 0.105 0.895 40 H 0.230 0.770 41 H 0.280 0.720 42 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 19.794 -19.780 2.004 28.055 hybrid contribution 1.703 0.733 -0.404 1.897 sum 21.497 -19.047 1.600 28.766 Atomic orbital electron populations 1.69999 1.05897 1.27567 1.47051 1.25007 0.95132 0.99121 0.94367 0.86063 0.79709 0.81540 0.77966 1.19503 1.20483 1.20438 1.22881 0.94916 0.90161 1.58762 0.90549 1.83638 1.04146 0.97171 1.95126 1.22855 1.02934 1.01947 0.93972 1.22012 0.93883 0.93963 0.97648 1.21071 0.97848 0.99039 0.98160 1.21122 0.98872 0.98975 0.91910 1.19841 1.00753 1.02934 0.92473 1.18409 0.79101 0.78184 0.89097 1.90783 1.61927 1.61358 1.27007 1.45852 1.35902 1.47041 1.09912 1.21289 0.94955 0.96170 0.88079 1.21824 0.97875 0.99295 0.97855 1.21204 0.95377 0.97831 0.98397 1.21942 0.97490 0.99892 0.97873 0.84272 1.27223 0.89652 0.97697 0.98687 1.74874 1.26281 1.05246 0.97466 1.47660 1.12136 1.44568 1.28170 1.21342 0.82866 0.80904 0.86233 1.90844 1.66273 1.34773 1.44589 1.21919 0.91376 0.91291 0.99549 0.92101 0.85074 0.85859 0.86497 0.76544 0.91277 0.91192 0.90385 0.90513 0.90610 0.89464 0.76995 0.71972 0.84303 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.20 13.22 55.49 0.73 -24.47 16 2 C 0.07 2.02 5.49 -17.46 -0.10 1.92 16 3 Si 0.92 21.19 29.55 -169.99 -5.02 16.16 16 4 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 5 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 6 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 7 C -0.52 -14.51 9.46 30.92 0.29 -14.21 16 8 H 0.08 2.11 7.79 -52.49 -0.41 1.70 16 9 S -0.04 -0.90 21.41 -107.50 -2.30 -3.20 16 10 C -0.11 -2.23 5.45 -39.00 -0.21 -2.44 16 11 C -0.05 -0.95 9.79 -39.26 -0.38 -1.33 16 12 C -0.14 -1.92 10.02 -39.67 -0.40 -2.32 16 13 C -0.09 -1.12 9.54 -39.12 -0.37 -1.50 16 14 C -0.16 -2.45 5.87 -105.00 -0.62 -3.07 16 15 C 0.56 8.39 7.77 -12.32 -0.10 8.30 16 16 O -0.53 -10.09 16.34 5.32 0.09 -10.00 16 17 N -0.73 -6.97 5.51 -61.25 -0.34 -7.31 16 18 C 0.12 0.91 5.67 -4.04 -0.02 0.89 16 19 C -0.13 -0.43 5.19 -26.73 -0.14 -0.57 16 20 C -0.09 -0.37 4.74 -26.73 -0.13 -0.50 16 21 C -0.15 -0.58 3.04 -92.08 -0.28 -0.86 16 22 H 0.14 0.32 8.14 -51.93 -0.42 -0.10 16 23 C 0.08 0.23 11.17 -13.55 -0.15 0.08 16 24 N -0.23 -1.29 12.22 32.83 0.40 -0.89 16 25 N -0.58 -3.54 7.13 31.51 0.22 -3.31 16 26 C 0.50 3.78 8.26 -10.42 -0.09 3.70 16 27 O -0.49 -5.63 18.03 5.54 0.10 -5.53 16 28 C -0.02 -0.39 9.34 -38.92 -0.36 -0.75 16 29 H 0.27 7.25 8.31 -40.82 -0.34 6.91 16 30 H 0.13 2.24 8.06 -52.48 -0.42 1.82 16 31 H 0.12 1.26 8.06 -52.49 -0.42 0.83 16 32 H 0.12 0.93 6.39 -52.49 -0.34 0.60 16 33 H 0.40 2.54 6.50 -40.82 -0.27 2.27 16 34 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.08 0.18 8.14 -51.93 -0.42 -0.24 16 37 H 0.08 0.12 7.33 -51.93 -0.38 -0.26 16 38 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 39 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 40 H 0.21 -0.19 7.73 -52.49 -0.41 -0.59 16 41 H 0.44 2.01 8.96 -183.31 -1.64 0.36 16 42 H 0.14 2.92 7.65 -52.49 -0.40 2.52 16 LS Contribution 381.19 15.07 5.74 5.74 Total: -1.00 -37.00 381.19 -9.78 -46.78 By element: Atomic # 1 Polarization: 5.04 SS G_CDS: -6.36 Total: -1.32 kcal Atomic # 6 Polarization: -9.61 SS G_CDS: -3.05 Total: -12.66 kcal Atomic # 7 Polarization: -37.00 SS G_CDS: 1.02 Total: -35.97 kcal Atomic # 8 Polarization: -15.72 SS G_CDS: 0.19 Total: -15.53 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.16 kcal Atomic # 16 Polarization: -0.90 SS G_CDS: -2.30 Total: -3.20 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -37.00 -9.78 -46.78 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001585937893.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.748 kcal (2) G-P(sol) polarization free energy of solvation -36.995 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.753 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.782 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.777 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.030 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds