Wall clock time and date at job start Wed Apr 1 2020 04:19:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86800 * 120.00591 * 2 1 4 4 H 1.48494 * 109.47392 * 180.27521 * 3 2 1 5 5 H 1.48501 * 109.47018 * 300.27993 * 3 2 1 6 6 H 1.48503 * 109.46570 * 60.27564 * 3 2 1 7 7 C 1.38734 * 119.99697 * 180.27876 * 2 1 3 8 8 H 1.07999 * 120.00481 * 179.72424 * 7 2 1 9 9 S 1.76205 * 119.99668 * 359.72412 * 7 2 1 10 10 C 1.76208 * 99.99586 * 174.88862 * 9 7 2 11 11 C 1.39218 * 120.01782 * 274.26480 * 10 9 7 12 12 C 1.38135 * 120.19972 * 179.77013 * 11 10 9 13 13 C 1.38087 * 120.24611 * 0.51131 * 12 11 10 14 14 C 1.39635 * 120.03491 * 359.74321 * 13 12 11 15 15 C 1.47855 * 120.10157 * 179.97438 * 14 13 12 16 16 O 1.21555 * 120.00176 * 180.02562 * 15 14 13 17 17 N 1.34779 * 120.00198 * 0.02579 * 15 14 13 18 18 C 1.46499 * 120.00434 * 179.97438 * 17 15 14 19 19 C 1.52997 * 109.47495 * 180.02562 * 18 17 15 20 20 C 1.52996 * 109.47385 * 179.97438 * 19 18 17 21 21 C 1.53003 * 109.47085 * 179.97438 * 20 19 18 22 22 H 1.08999 * 110.53912 * 305.70144 * 21 20 19 23 23 C 1.51441 * 110.60856 * 68.55425 * 21 20 19 24 24 N 1.27913 * 106.97772 * 118.45576 * 23 21 20 25 25 N 1.39152 * 113.21631 * 0.14925 * 24 23 21 26 26 C 1.34956 * 111.12125 * 359.89572 * 25 24 23 27 27 O 1.21301 * 127.49856 * 180.02562 * 26 25 24 28 28 C 1.38834 * 120.01802 * 94.54477 * 10 9 7 29 29 H 0.97007 * 119.99302 * 359.72198 * 1 2 3 30 30 H 1.08003 * 119.89955 * 0.02703 * 11 10 9 31 31 H 1.08001 * 119.88097 * 180.28016 * 12 11 10 32 32 H 1.07997 * 119.98352 * 179.72221 * 13 12 11 33 33 H 0.97001 * 119.99432 * 0.02562 * 17 15 14 34 34 H 1.09006 * 109.46698 * 300.00407 * 18 17 15 35 35 H 1.08998 * 109.46755 * 59.99724 * 18 17 15 36 36 H 1.08998 * 109.47067 * 300.00452 * 19 18 17 37 37 H 1.09006 * 109.46848 * 59.99970 * 19 18 17 38 38 H 1.09000 * 109.47101 * 299.99635 * 20 19 18 39 39 H 1.08997 * 109.47186 * 59.99945 * 20 19 18 40 40 H 1.07999 * 126.41372 * 298.47818 * 23 21 20 41 41 H 0.96998 * 124.44006 * 179.88385 * 25 24 23 42 42 H 1.07993 * 120.12391 * 359.97438 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2504 1.6176 0.0000 4 1 3.7103 1.3462 -0.0067 5 1 1.8866 2.3993 -1.2091 6 1 1.8967 2.3934 1.2159 7 6 2.0098 -1.2015 -0.0058 8 1 3.0898 -1.2016 -0.0103 9 16 1.1286 -2.7274 -0.0059 10 6 2.4718 -3.8562 -0.1689 11 6 2.9625 -4.1772 -1.4316 12 6 4.0184 -5.0580 -1.5634 13 6 4.5874 -5.6342 -0.4449 14 6 4.0997 -5.3234 0.8261 15 6 4.7075 -5.9399 2.0247 16 8 4.2813 -5.6685 3.1302 17 7 5.7343 -6.8028 1.8916 18 6 6.3369 -7.4133 3.0792 19 6 7.4734 -8.3447 2.6530 20 6 8.1031 -8.9817 3.8933 21 6 9.2392 -9.9136 3.4670 22 1 8.8834 -10.6419 2.7382 23 6 10.3982 -9.1181 2.9035 24 7 11.4073 -9.3440 3.6564 25 7 11.1256 -10.2147 4.7046 26 6 9.8367 -10.6133 4.6728 27 8 9.2775 -11.3668 5.4416 28 6 3.0375 -4.4305 0.9614 29 1 -0.4849 0.8402 0.0041 30 1 2.5190 -3.7330 -2.3105 31 1 4.3979 -5.2999 -2.5452 32 1 5.4098 -6.3257 -0.5532 33 1 6.0746 -7.0191 1.0094 34 1 6.7320 -6.6319 3.7284 35 1 5.5806 -7.9847 3.6173 36 1 7.0786 -9.1260 2.0035 37 1 8.2295 -7.7727 2.1151 38 1 8.4981 -8.2001 4.5423 39 1 7.3472 -9.5535 4.4316 40 1 10.3748 -8.4813 2.0316 41 1 11.7712 -10.4982 5.3708 42 1 2.6562 -4.1865 1.9419 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001585937893.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:19:20 Heat of formation + Delta-G solvation = -32.257174 kcal Electronic energy + Delta-G solvation = -25490.884449 eV Core-core repulsion = 21561.725575 eV Total energy + Delta-G solvation = -3929.158874 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.109 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.29115 -41.15659 -39.16574 -38.58068 -37.05036 -34.86341 -34.64407 -32.55825 -31.94472 -31.78773 -30.06713 -27.73899 -26.36052 -24.48109 -23.62222 -23.11236 -22.12074 -21.88798 -21.38589 -19.95517 -18.91715 -18.85743 -17.41747 -17.14688 -16.92704 -16.91219 -16.63004 -16.52872 -16.21242 -15.82725 -15.59009 -15.45813 -15.17996 -14.82512 -14.64813 -14.57162 -14.05189 -13.80887 -13.45032 -13.29434 -13.20317 -13.09318 -12.99212 -12.96964 -12.61936 -12.37061 -12.25256 -11.98180 -11.71453 -11.58298 -11.23965 -11.10369 -10.82477 -10.71856 -10.21568 -10.16227 -9.84343 -9.65129 -8.80171 -8.38341 -6.18481 -0.13419 0.29559 0.61618 1.31084 1.37251 1.48089 1.57543 1.67504 1.72885 1.84952 2.12876 2.25934 2.85112 2.87860 2.94533 3.27794 3.43514 3.65771 3.72543 3.95348 3.98757 4.08894 4.17196 4.26790 4.38987 4.41975 4.49845 4.54379 4.69636 4.72354 4.81005 4.95436 4.98366 5.11491 5.25832 5.26508 5.29362 5.36533 5.40571 5.45720 5.55401 5.63656 5.91299 6.16910 6.52390 6.55595 6.87082 7.01910 7.22275 8.68960 Molecular weight = 347.11amu Principal moments of inertia in cm(-1) A = 0.020257 B = 0.001644 C = 0.001616 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1381.892422 B =17032.197891 C =17323.075049 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.907 5.907 2 C 0.018 3.982 3 Si 0.994 3.006 4 H -0.264 1.264 5 H -0.266 1.266 6 H -0.273 1.273 7 C -0.535 4.535 8 H 0.068 0.932 9 S -0.102 6.102 10 C -0.130 4.130 11 C -0.066 4.066 12 C -0.121 4.121 13 C -0.058 4.058 14 C -0.157 4.157 15 C 0.560 3.440 16 O -0.587 6.587 17 N -0.703 5.703 18 C 0.113 3.887 19 C -0.115 4.115 20 C -0.084 4.084 21 C -0.140 4.140 22 H 0.166 0.834 23 C 0.112 3.888 24 N -0.269 5.269 25 N -0.579 5.579 26 C 0.487 3.513 27 O -0.548 6.548 28 C -0.048 4.048 29 H 0.273 0.727 30 H 0.128 0.872 31 H 0.176 0.824 32 H 0.183 0.817 33 H 0.421 0.579 34 H 0.055 0.945 35 H 0.053 0.947 36 H 0.102 0.898 37 H 0.110 0.890 38 H 0.066 0.934 39 H 0.069 0.931 40 H 0.260 0.740 41 H 0.436 0.564 42 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.669 -20.775 -2.838 32.376 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.187 4.187 3 Si 0.816 3.184 4 H -0.188 1.188 5 H -0.191 1.191 6 H -0.199 1.199 7 C -0.682 4.682 8 H 0.086 0.914 9 S 0.132 5.868 10 C -0.241 4.241 11 C -0.087 4.087 12 C -0.141 4.141 13 C -0.076 4.076 14 C -0.162 4.162 15 C 0.348 3.652 16 O -0.468 6.468 17 N -0.356 5.356 18 C -0.011 4.011 19 C -0.152 4.152 20 C -0.124 4.124 21 C -0.164 4.164 22 H 0.183 0.817 23 C -0.101 4.101 24 N -0.074 5.074 25 N -0.325 5.325 26 C 0.274 3.726 27 O -0.423 6.423 28 C -0.070 4.070 29 H 0.083 0.917 30 H 0.146 0.854 31 H 0.193 0.807 32 H 0.200 0.800 33 H 0.260 0.740 34 H 0.073 0.927 35 H 0.071 0.929 36 H 0.120 0.880 37 H 0.129 0.871 38 H 0.085 0.915 39 H 0.088 0.912 40 H 0.275 0.725 41 H 0.281 0.719 42 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 23.716 -20.933 -1.312 31.660 hybrid contribution 0.608 0.916 0.606 1.255 sum 24.324 -20.017 -0.706 31.510 Atomic orbital electron populations 1.70124 1.07544 1.28703 1.47928 1.26026 0.96071 1.02914 0.93667 0.84973 0.78374 0.76622 0.78458 1.18847 1.19072 1.19862 1.23096 0.94652 0.91505 1.58929 0.91357 1.83541 1.08730 0.98818 1.95684 1.22465 1.02959 1.02545 0.96172 1.22075 0.95437 0.95401 0.95779 1.21576 0.95269 0.96300 1.00925 1.21771 0.98749 0.97667 0.89439 1.19985 0.99465 1.01914 0.94795 1.18390 0.80072 0.78867 0.87898 1.90769 1.63866 1.63426 1.28778 1.45608 1.33602 1.44635 1.11745 1.21454 0.95946 0.96354 0.87301 1.21770 0.96784 0.99133 0.97557 1.21102 0.95048 0.97400 0.98815 1.21966 0.97540 1.00178 0.96682 0.81718 1.28046 0.87816 0.95882 0.98367 1.74957 1.27585 1.06609 0.98259 1.47792 1.11865 1.44385 1.28503 1.22005 0.83363 0.80463 0.86806 1.90806 1.67403 1.37340 1.46770 1.21622 0.93828 0.93885 0.97632 0.91736 0.85396 0.80652 0.79979 0.74002 0.92656 0.92869 0.87969 0.87127 0.91545 0.91178 0.72474 0.71904 0.87934 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -54.49 13.22 21.64 0.29 -54.20 16 2 C 0.02 1.04 5.49 84.84 0.47 1.51 16 3 Si 0.99 44.15 29.55 68.60 2.03 46.17 16 4 H -0.26 -11.33 7.11 99.48 0.71 -10.62 16 5 H -0.27 -11.16 7.11 99.48 0.71 -10.45 16 6 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 7 C -0.53 -31.22 9.46 67.94 0.64 -30.58 16 8 H 0.07 3.94 7.79 -2.91 -0.02 3.91 16 9 S -0.10 -5.60 21.41 -56.49 -1.21 -6.81 16 10 C -0.13 -5.66 5.45 22.65 0.12 -5.53 16 11 C -0.07 -2.24 9.79 22.48 0.22 -2.02 16 12 C -0.12 -2.66 10.02 22.21 0.22 -2.44 16 13 C -0.06 -1.12 9.54 22.57 0.22 -0.90 16 14 C -0.16 -4.65 5.87 -20.11 -0.12 -4.77 16 15 C 0.56 15.77 7.77 86.79 0.67 16.45 16 16 O -0.59 -22.85 16.34 -3.89 -0.06 -22.92 16 17 N -0.70 -10.36 5.51 -465.96 -2.57 -12.93 16 18 C 0.11 1.40 5.67 86.38 0.49 1.89 16 19 C -0.12 -0.16 5.19 30.59 0.16 0.00 16 20 C -0.08 -0.46 4.74 30.59 0.15 -0.32 16 21 C -0.14 -0.63 3.04 -11.74 -0.04 -0.66 16 22 H 0.17 -0.01 8.14 -2.39 -0.02 -0.03 16 23 C 0.11 0.11 11.17 88.92 0.99 1.10 16 24 N -0.27 -2.27 12.22 -49.90 -0.61 -2.88 16 25 N -0.58 -6.68 7.13 -172.50 -1.23 -7.91 16 26 C 0.49 7.04 8.26 87.94 0.73 7.77 16 27 O -0.55 -12.99 18.03 -3.09 -0.06 -13.05 16 28 C -0.05 -1.96 9.34 22.70 0.21 -1.74 16 29 H 0.27 15.17 8.31 -92.70 -0.77 14.40 16 30 H 0.13 4.33 8.06 -2.91 -0.02 4.31 16 31 H 0.18 2.18 8.06 -2.91 -0.02 2.15 16 32 H 0.18 1.17 6.39 -2.91 -0.02 1.15 16 33 H 0.42 2.33 6.50 -92.71 -0.60 1.73 16 34 H 0.06 0.88 8.14 -2.38 -0.02 0.86 16 35 H 0.05 0.87 8.14 -2.39 -0.02 0.86 16 36 H 0.10 -0.22 8.14 -2.39 -0.02 -0.24 16 37 H 0.11 -0.50 7.33 -2.38 -0.02 -0.52 16 38 H 0.07 0.51 8.14 -2.39 -0.02 0.49 16 39 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 40 H 0.26 -2.36 7.73 -2.91 -0.02 -2.38 16 41 H 0.44 4.16 8.96 -213.93 -1.92 2.24 16 42 H 0.10 4.81 7.65 -2.91 -0.02 4.78 16 Total: -1.00 -92.86 381.19 0.28 -92.58 By element: Atomic # 1 Polarization: 3.62 SS G_CDS: -1.44 Total: 2.18 kcal Atomic # 6 Polarization: -25.39 SS G_CDS: 5.14 Total: -20.25 kcal Atomic # 7 Polarization: -73.79 SS G_CDS: -4.12 Total: -77.91 kcal Atomic # 8 Polarization: -35.84 SS G_CDS: -0.12 Total: -35.96 kcal Atomic # 14 Polarization: 44.15 SS G_CDS: 2.03 Total: 46.17 kcal Atomic # 16 Polarization: -5.60 SS G_CDS: -1.21 Total: -6.81 kcal Total: -92.86 0.28 -92.58 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001585937893.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.325 kcal (2) G-P(sol) polarization free energy of solvation -92.862 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.537 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.280 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.583 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.257 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds