Wall clock time and date at job start Wed Apr 1 2020 04:17:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13598 * 1 3 3 C 1.43207 * 179.97438 * 2 1 4 4 C 1.39629 * 120.15069 * 128.37756 * 3 2 1 5 5 C 1.37941 * 119.84578 * 180.02562 * 4 3 2 6 6 C 1.38361 * 120.15237 * 0.02562 * 5 4 3 7 7 C 1.50701 * 119.84772 * 179.97438 * 6 5 4 8 8 C 1.52998 * 109.47565 * 89.99747 * 7 6 5 9 9 C 1.50701 * 109.47076 * 295.00498 * 8 7 6 10 10 N 1.27940 * 119.99651 * 264.99329 * 9 8 7 11 11 Si 1.86797 * 120.00313 * 84.99538 * 9 8 7 12 12 H 1.48508 * 109.47102 * 89.99927 * 11 9 8 13 13 H 1.48498 * 109.47358 * 209.99896 * 11 9 8 14 14 H 1.48500 * 109.47041 * 330.00336 * 11 9 8 15 15 C 1.50698 * 109.47319 * 174.99882 * 8 7 6 16 16 O 1.21377 * 120.00047 * 0.02562 * 15 8 7 17 17 N 1.34328 * 119.99600 * 180.02562 * 15 8 7 18 18 O 1.41597 * 119.99345 * 180.02562 * 17 15 8 19 19 C 1.35764 * 113.99713 * 179.97438 * 18 17 15 20 20 C 1.38956 * 119.99095 * 269.72867 * 19 18 17 21 21 C 1.38228 * 120.23866 * 179.72397 * 20 19 18 22 22 C 1.38014 * 120.22074 * 0.55177 * 21 20 19 23 23 C 1.39638 * 119.98186 * 359.72171 * 22 21 20 24 24 C 1.43195 * 120.12218 * 179.97438 * 23 22 21 25 25 N 9.80745 * 125.86591 * 31.90051 * 7 1 2 26 26 C 1.38548 * 119.98856 * 90.00320 * 19 18 17 27 27 C 1.38356 * 120.30532 * 0.23353 * 6 5 4 28 28 C 1.37946 * 120.15223 * 359.48875 * 27 6 5 29 29 H 1.08010 * 120.07598 * 0.02562 * 4 3 2 30 30 H 1.08004 * 119.92420 * 180.02562 * 5 4 3 31 31 H 1.09009 * 109.47298 * 329.99861 * 7 6 5 32 32 H 1.09000 * 109.47356 * 210.00176 * 7 6 5 33 33 H 1.09005 * 109.46619 * 55.00228 * 8 7 6 34 34 H 0.97001 * 120.00072 * 180.02562 * 10 9 8 35 35 H 0.96994 * 120.00523 * 359.97438 * 17 15 8 36 36 H 1.07995 * 119.88614 * 359.97438 * 20 19 18 37 37 H 1.07994 * 119.89125 * 180.27650 * 21 20 19 38 38 H 1.08000 * 120.01230 * 179.75270 * 22 21 20 39 39 H 1.08000 * 120.11530 * 359.97438 * 26 19 18 40 40 H 1.08002 * 119.92675 * 179.72209 * 27 6 5 41 41 H 1.08004 * 120.08256 * 180.25688 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2690 0.7505 -0.9465 5 6 4.6484 0.7462 -0.9411 6 6 5.3374 0.0006 -0.0010 7 6 6.8444 0.0004 -0.0017 8 6 7.3551 1.1307 0.8941 9 6 6.9563 2.4586 0.3037 10 7 7.7731 3.0962 -0.4467 11 14 5.2694 3.1738 0.6675 12 1 5.3424 4.0187 1.8867 13 1 4.8241 4.0015 -0.4822 14 1 4.3008 2.0700 0.8875 15 6 8.8570 1.0549 0.9915 16 8 9.4602 0.1822 0.4016 17 7 9.5282 1.9531 1.7312 18 8 10.9394 1.8821 1.8222 19 6 11.4918 2.8483 2.5998 20 6 11.8777 4.0580 2.0354 21 6 12.4354 5.0474 2.8233 22 6 12.6233 4.8362 4.1742 23 6 12.2440 3.6219 4.7500 24 6 12.4381 3.3993 6.1512 25 7 12.5898 -6.7468 -4.2031 26 6 11.6758 2.6256 3.9548 27 6 4.6491 -0.7490 0.9364 28 6 3.2697 -0.7493 0.9461 29 1 2.7324 1.3327 -1.6812 30 1 5.1919 1.3261 -1.6724 31 1 7.2073 0.1505 -1.0186 32 1 7.2078 -0.9552 0.3764 33 1 6.9209 1.0302 1.8889 34 1 7.5167 3.9512 -0.8265 35 1 9.0463 2.6507 2.2022 36 1 11.7378 4.2274 0.9780 37 1 12.7292 5.9871 2.3796 38 1 13.0630 5.6100 4.7859 39 1 11.3802 1.6845 4.3944 40 1 5.1931 -1.3323 1.6646 41 1 2.7336 -1.3315 1.6810 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001587208586.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:17:54 Heat of formation + Delta-G solvation = 525.373867 kcal Electronic energy + Delta-G solvation = -27486.466542 eV Core-core repulsion = 23432.388674 eV Total energy + Delta-G solvation = -4054.077868 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 348.113 amu Computer time = 3.18 seconds Orbital eigenvalues (eV) -41.34098 -40.55850 -39.87599 -37.95965 -37.61790 -37.01963 -34.43780 -33.60477 -32.10282 -32.06155 -31.15178 -30.05077 -28.69103 -26.72679 -24.95828 -23.84706 -23.32416 -23.25919 -22.80232 -20.93974 -20.25205 -19.91051 -18.75325 -18.25915 -17.37269 -16.99301 -16.84997 -16.57041 -16.35590 -15.94148 -15.73199 -15.46978 -15.42389 -15.08672 -14.72440 -14.60999 -14.60956 -14.41666 -14.34337 -14.13767 -13.90111 -13.82226 -13.39759 -13.36810 -13.29393 -12.75176 -12.50292 -12.44228 -12.30792 -12.05840 -12.04325 -11.85530 -11.42725 -11.23804 -10.31604 -10.27272 -10.02215 -9.92989 -9.83297 -9.70054 -9.63165 -6.44298 -5.10450 -5.10158 -0.27704 -0.06336 0.38571 0.72704 0.73640 0.96480 1.03546 1.42220 1.57312 1.61201 1.62512 1.69102 1.92305 1.93155 2.86373 2.88510 3.08366 3.23169 3.45810 3.55650 3.85701 3.91859 4.00878 4.13235 4.14402 4.16280 4.33874 4.41330 4.47914 4.48088 4.70764 4.75836 4.82870 4.83727 5.09036 5.12148 5.15768 5.20961 5.26390 5.38137 5.57945 5.61580 5.73487 5.79587 5.88566 5.93493 6.00527 6.21666 6.44142 6.62541 6.77852 7.20286 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.473 5.473 2 C 0.277 3.723 3 C -0.046 4.046 4 C -0.067 4.067 5 C -0.131 4.131 6 C -0.051 4.051 7 C -0.047 4.047 8 C -0.058 4.058 9 C -0.009 4.009 10 N -0.644 5.644 11 Si 0.942 3.058 12 H -0.266 1.266 13 H -0.238 1.238 14 H -0.185 1.185 15 C 0.544 3.456 16 O -0.569 6.569 17 N -0.575 5.575 18 O -0.127 6.127 19 C 0.111 3.889 20 C -0.322 4.322 21 C -0.041 4.041 22 C -0.289 4.289 23 C -0.194 4.194 24 C -0.223 4.223 25 N 1.000 4.000 26 C -0.274 4.274 27 C -0.105 4.105 28 C -0.059 4.059 29 H 0.145 0.855 30 H 0.146 0.854 31 H 0.085 0.915 32 H 0.107 0.893 33 H 0.155 0.845 34 H 0.350 0.650 35 H 0.409 0.591 36 H 0.107 0.893 37 H 0.126 0.874 38 H 0.090 0.910 39 H 0.087 0.913 40 H 0.162 0.838 41 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.446 -45.957 -37.163 59.154 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.149 5.149 2 C -0.037 4.037 3 C -0.049 4.049 4 C -0.087 4.087 5 C -0.149 4.149 6 C -0.052 4.052 7 C -0.085 4.085 8 C -0.080 4.080 9 C -0.257 4.257 10 N -0.258 5.258 11 Si 0.756 3.244 12 H -0.191 1.191 13 H -0.161 1.161 14 H -0.105 1.105 15 C 0.333 3.667 16 O -0.448 6.448 17 N -0.279 5.279 18 O -0.120 6.120 19 C 0.066 3.934 20 C -0.342 4.342 21 C -0.059 4.059 22 C -0.308 4.308 23 C -0.194 4.194 24 C -0.223 4.223 25 N 1.000 4.000 26 C -0.295 4.295 27 C -0.123 4.123 28 C -0.079 4.079 29 H 0.163 0.837 30 H 0.164 0.836 31 H 0.104 0.896 32 H 0.125 0.875 33 H 0.172 0.828 34 H 0.169 0.831 35 H 0.249 0.751 36 H 0.125 0.875 37 H 0.143 0.857 38 H 0.108 0.892 39 H 0.105 0.895 40 H 0.180 0.820 41 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 1.411 -46.581 -38.003 60.134 hybrid contribution 0.308 1.531 -0.987 1.847 sum 1.719 -45.051 -38.990 59.605 Atomic orbital electron populations 1.81329 1.13821 1.10116 1.09658 1.26117 0.93019 0.92267 0.92285 1.16149 0.82917 1.04459 1.01381 1.21319 0.94301 0.96458 0.96665 1.21153 0.93606 1.00248 0.99848 1.20023 0.94775 0.95472 0.94924 1.20346 0.90285 0.97376 1.00522 1.20937 0.87396 0.95224 1.04431 1.30467 1.05153 0.96160 0.93875 1.68253 1.37577 1.12542 1.07435 0.85795 0.74665 0.82171 0.81792 1.19114 1.16060 1.10528 1.21071 0.89918 0.79322 0.76431 1.90638 1.70429 1.37019 1.46687 1.48130 0.93784 1.33788 1.52152 1.88964 1.04204 1.49445 1.69350 1.18519 0.96875 0.89167 0.88803 1.20276 1.19414 0.95456 0.99031 1.20649 0.95032 0.97643 0.92582 1.19935 1.17409 0.97524 0.95912 1.21159 1.01110 0.95974 1.01128 1.81885 1.12807 0.24344 1.03275 1.99999 0.62904 0.62789 0.74307 1.19928 1.17192 0.99327 0.93049 1.21296 0.93156 0.99073 0.98789 1.21427 0.94602 0.95795 0.96117 0.83678 0.83599 0.89630 0.87498 0.82794 0.83131 0.75125 0.87497 0.85660 0.89184 0.89518 0.81997 0.83283 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 56. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.47 -4.83 18.54 19.01 0.35 -4.48 16 2 C 0.28 0.98 15.33 88.33 1.35 2.33 16 3 C -0.05 0.13 5.68 -21.36 -0.12 0.01 16 4 C -0.07 0.34 8.74 22.54 0.20 0.53 16 5 C -0.13 0.80 5.65 22.23 0.13 0.92 16 6 C -0.05 0.31 3.61 -19.81 -0.07 0.24 16 7 C -0.05 0.12 4.17 29.85 0.12 0.25 16 8 C -0.06 -0.17 2.28 -12.29 -0.03 -0.20 16 9 C -0.01 -0.03 4.36 88.68 0.39 0.36 16 10 N -0.64 -5.08 12.86 24.11 0.31 -4.77 16 11 Si 0.94 -0.44 25.19 68.60 1.73 1.28 16 12 H -0.27 -1.20 7.11 99.48 0.71 -0.50 16 13 H -0.24 0.12 7.11 99.48 0.71 0.83 16 14 H -0.18 0.77 4.65 99.48 0.46 1.23 16 15 C 0.54 8.74 6.61 87.73 0.58 9.32 16 16 O -0.57 -12.52 16.32 14.19 0.23 -12.29 16 17 N -0.57 -13.14 6.16 -173.96 -1.07 -14.21 16 18 O -0.13 -4.31 10.97 36.81 0.40 -3.91 16 19 C 0.11 4.25 5.80 22.52 0.13 4.38 16 20 C -0.32 -11.92 9.98 22.44 0.22 -11.69 16 21 C -0.04 -1.52 10.02 22.21 0.22 -1.30 16 22 C -0.29 -12.37 9.75 22.55 0.22 -12.15 16 23 C -0.19 -8.92 5.73 -21.38 -0.12 -9.05 16 24 C -0.22 -9.99 25.13 69.07 1.74 -8.25 16 25 N 1.00 -71.43 30.19 37.02 1.12 -70.31 16 26 C -0.27 -11.80 9.70 22.66 0.22 -11.58 16 27 C -0.11 0.85 9.63 22.23 0.21 1.06 16 28 C -0.06 0.37 9.76 22.54 0.22 0.59 16 29 H 0.15 -1.08 8.06 -2.91 -0.02 -1.10 16 30 H 0.15 -1.20 7.73 -2.91 -0.02 -1.23 16 31 H 0.09 -0.07 8.08 -2.38 -0.02 -0.09 16 32 H 0.11 -0.40 7.89 -2.39 -0.02 -0.42 16 33 H 0.15 -0.54 7.85 -2.38 -0.02 -0.56 16 34 H 0.35 1.54 8.23 -92.71 -0.76 0.78 16 35 H 0.41 8.11 8.39 -92.71 -0.78 7.33 16 36 H 0.11 3.56 8.06 -2.91 -0.02 3.54 16 37 H 0.13 3.70 8.06 -2.91 -0.02 3.68 16 38 H 0.09 3.66 8.06 -2.91 -0.02 3.64 16 39 H 0.09 3.64 8.06 -2.91 -0.02 3.62 16 40 H 0.16 -2.00 8.06 -2.91 -0.02 -2.02 16 41 H 0.15 -1.34 8.06 -2.91 -0.02 -1.36 16 Total: 0.00 -134.33 395.62 8.77 -125.55 By element: Atomic # 1 Polarization: 17.27 SS G_CDS: 0.09 Total: 17.36 kcal Atomic # 6 Polarization: -39.84 SS G_CDS: 5.61 Total: -34.23 kcal Atomic # 7 Polarization: -94.48 SS G_CDS: 0.71 Total: -93.77 kcal Atomic # 8 Polarization: -16.84 SS G_CDS: 0.64 Total: -16.20 kcal Atomic # 14 Polarization: -0.44 SS G_CDS: 1.73 Total: 1.28 kcal Total: -134.33 8.77 -125.55 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001587208586.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 650.925 kcal (2) G-P(sol) polarization free energy of solvation -134.326 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 516.599 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.775 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -125.552 kcal (6) G-S(sol) free energy of system = (1) + (5) 525.374 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.18 seconds