Wall clock time and date at job start Wed Apr 1 2020 04:38:14
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31519 * 1
3 3 Si 1.86794 * 120.00260 * 2 1
4 4 H 1.48495 * 109.47399 * 179.97438 * 3 2 1
5 5 H 1.48502 * 109.47292 * 300.00407 * 3 2 1
6 6 H 1.48508 * 109.46870 * 59.99755 * 3 2 1
7 7 C 1.37880 * 120.00087 * 179.97438 * 2 1 3
8 8 H 1.07995 * 120.00197 * 180.02562 * 7 2 1
9 9 C 1.50701 * 119.99650 * 0.02562 * 7 2 1
10 10 O 1.42905 * 110.27644 * 300.70046 * 9 7 2
11 11 C 1.54598 * 110.39454 * 62.84357 * 9 7 2
12 12 C 1.54937 * 102.91763 * 96.99962 * 11 9 7
13 13 N 1.48534 * 103.22777 * 37.41949 * 12 11 9
14 14 C 1.39044 * 110.99730 * 200.27919 * 13 12 11
15 15 N 1.32455 * 119.64845 * 117.39539 * 14 13 12
16 16 C 1.31995 * 121.89058 * 179.97438 * 15 14 13
17 17 C 1.37850 * 120.97449 * 359.97438 * 16 15 14
18 18 C 1.39895 * 119.19111 * 0.02562 * 17 16 15
19 19 C 1.48468 * 120.85714 * 180.02562 * 18 17 16
20 20 N 1.34055 * 126.67251 * 179.68976 * 19 18 17
21 21 N 1.28981 * 107.26612 * 179.83328 * 20 19 18
22 22 N 1.28734 * 108.94344 * 0.42921 * 21 20 19
23 23 H 0.97008 * 125.33881 * 179.72977 * 22 21 20
24 24 N 1.28866 * 109.31824 * 359.72383 * 22 21 20
25 25 C 1.38901 * 119.65120 * 297.11709 * 14 13 12
26 26 N 1.48030 * 120.51828 * 0.02562 * 25 14 13
27 27 O 1.21798 * 120.00179 * 89.99482 * 26 25 14
28 28 O 1.21805 * 119.99725 * 269.99611 * 26 25 14
29 29 C 1.47896 * 105.81950 * 320.78669 * 13 12 11
30 30 H 0.97003 * 119.99693 * 0.02562 * 1 2 3
31 31 H 0.96705 * 113.99788 * 57.91167 * 10 9 7
32 32 H 1.09002 * 110.72612 * 215.35568 * 11 9 7
33 33 H 1.09003 * 110.72462 * 338.64727 * 11 9 7
34 34 H 1.09000 * 110.67119 * 278.97969 * 12 11 9
35 35 H 1.09002 * 110.81274 * 155.91684 * 12 11 9
36 36 H 1.08001 * 119.50640 * 179.97438 * 16 15 14
37 37 H 1.07994 * 120.40551 * 179.97438 * 17 16 15
38 38 H 1.09001 * 109.92230 * 265.98011 * 29 13 12
39 39 H 1.08997 * 109.91883 * 144.68384 * 29 13 12
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3152 0.0000 0.0000
3 14 2.2492 1.6176 0.0000
4 1 3.7092 1.3463 0.0006
5 1 1.8905 2.3964 -1.2124
6 1 1.8904 2.3964 1.2125
7 6 2.0046 -1.1941 0.0005
8 1 3.0846 -1.1941 0.0010
9 6 1.2510 -2.4991 0.0005
10 8 0.4103 -2.5855 1.1529
11 6 0.4094 -2.6353 -1.2891
12 6 1.3151 -3.4968 -2.2045
13 7 1.9380 -4.4580 -1.2588
14 6 3.0984 -5.0043 -1.7957
15 7 4.2609 -4.7900 -1.1981
16 6 5.3892 -5.2873 -1.6690
17 6 5.4026 -6.0574 -2.8122
18 6 4.1987 -6.3110 -3.4782
19 6 4.1702 -7.1360 -4.7122
20 7 3.0886 -7.4557 -5.4368
21 7 3.4907 -8.1786 -6.4264
22 7 4.7666 -8.3285 -6.3432
23 1 5.3138 -8.8342 -6.9643
24 7 5.2027 -7.7012 -5.3054
25 6 3.0256 -5.7737 -2.9499
26 7 1.7235 -6.0153 -3.6113
27 8 1.3248 -5.2484 -4.4695
28 8 1.0509 -6.9810 -3.2974
29 6 2.2341 -3.6840 -0.0338
30 1 -0.4850 0.8401 -0.0004
31 1 -0.2302 -1.8648 1.2274
32 1 -0.5306 -3.1477 -1.0840
33 1 0.2276 -1.6579 -1.7361
34 1 2.0759 -2.8803 -2.6832
35 1 0.7216 -4.0228 -2.9523
36 1 6.3156 -5.0880 -1.1509
37 1 6.3311 -6.4595 -3.1897
38 1 3.2593 -3.3151 -0.0664
39 1 2.0903 -4.3114 0.8457
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001592673836.mol2 39
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 04:38:14
Heat of formation + Delta-G solvation = 147.421902 kcal
Electronic energy + Delta-G solvation = -31179.583436 eV
Core-core repulsion = 26744.215568 eV
Total energy + Delta-G solvation = -4435.367868 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 347.117 amu
Computer time = 0.66 seconds
Orbital eigenvalues (eV)
-45.01525 -42.09884 -40.60375 -38.45572 -36.11673 -35.51547 -34.97600 -34.38056
-32.40331 -32.21481 -31.71938 -28.95674 -28.24657 -26.74408 -25.76655 -25.01486
-24.57852 -22.81283 -22.38038 -20.95714 -20.01513 -19.61910 -18.94076 -18.43630
-17.78331 -17.66464 -17.57505 -16.97285 -16.04128 -15.59906 -15.31326 -14.89979
-14.84640 -14.56832 -14.36191 -13.70637 -13.47009 -13.20981 -12.72084 -12.56188
-12.40790 -11.97033 -11.75477 -11.73041 -11.67760 -11.41166 -11.30830 -11.21905
-11.10703 -10.84317 -10.72914 -10.53239 -10.41958 -10.32548 -10.09325 -9.93005
-9.77679 -9.30419 -8.68845 -8.32925 -8.15902 -6.29172 -4.39573 -0.12480
0.48570 0.68379 0.89845 1.51054 1.69209 1.79978 2.87300 3.11945
3.16975 3.26227 3.29484 3.38612 3.66087 4.10804 4.24766 4.31011
4.52126 4.62346 4.73936 4.88505 4.97376 5.12627 5.36132 5.42500
5.67106 5.74083 5.84328 5.85500 6.02857 6.27286 6.39561 6.59788
6.63458 6.86258 6.93060 7.16186 7.23774 7.42542 7.51676 7.58163
7.71758 7.94104 8.05800 8.64165 9.29665 9.45265 10.76851
Molecular weight = 347.12amu
Principal moments of inertia in cm(-1)
A = 0.018248 B = 0.003291 C = 0.003133
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1534.074097 B = 8506.202043 C = 8935.851658
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.893 5.893
2 C 0.070 3.930
3 Si 0.901 3.099
4 H -0.272 1.272
5 H -0.282 1.282
6 H -0.281 1.281
7 C -0.536 4.536
8 H 0.063 0.937
9 C 0.247 3.753
10 O -0.587 6.587
11 C -0.126 4.126
12 C 0.034 3.966
13 N -0.466 5.466
14 C 0.379 3.621
15 N -0.483 5.483
16 C 0.170 3.830
17 C -0.172 4.172
18 C 0.099 3.901
19 C 0.194 3.806
20 N -0.250 5.250
21 N -0.030 5.030
22 N -0.220 5.220
23 H 0.480 0.520
24 N -0.268 5.268
25 C -0.077 4.077
26 N 0.044 4.956
27 O -0.137 6.137
28 O -0.121 6.121
29 C 0.053 3.947
30 H 0.269 0.731
31 H 0.385 0.615
32 H 0.057 0.943
33 H 0.095 0.905
34 H 0.061 0.939
35 H 0.087 0.913
36 H 0.183 0.817
37 H 0.162 0.838
38 H 0.091 0.909
39 H 0.080 0.920
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 12.957 -13.657 -10.384 21.499
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.532 5.532
2 C -0.133 4.133
3 Si 0.728 3.272
4 H -0.197 1.197
5 H -0.208 1.208
6 H -0.207 1.207
7 C -0.574 4.574
8 H 0.082 0.918
9 C 0.207 3.793
10 O -0.396 6.396
11 C -0.165 4.165
12 C -0.090 4.090
13 N -0.181 5.181
14 C 0.145 3.855
15 N -0.198 5.198
16 C 0.010 3.990
17 C -0.196 4.196
18 C 0.087 3.913
19 C -0.086 4.086
20 N -0.124 5.124
21 N -0.025 5.025
22 N -0.067 5.067
23 H 0.335 0.665
24 N -0.121 5.121
25 C -0.166 4.166
26 N 0.575 4.425
27 O -0.357 6.357
28 O -0.347 6.347
29 C -0.073 4.073
30 H 0.079 0.921
31 H 0.236 0.764
32 H 0.076 0.924
33 H 0.114 0.886
34 H 0.080 0.920
35 H 0.105 0.895
36 H 0.200 0.800
37 H 0.180 0.820
38 H 0.109 0.891
39 H 0.098 0.902
Dipole moment (debyes) X Y Z Total
from point charges 13.080 -14.088 -9.559 21.470
hybrid contribution 0.905 1.115 -1.254 1.907
sum 13.985 -12.973 -10.813 21.927
Atomic orbital electron populations
1.69655 1.05907 1.27644 1.50014 1.25024 0.95030 0.99554 0.93648
0.86392 0.80091 0.82885 0.77801 1.19677 1.20786 1.20686 1.21732
0.93559 0.90393 1.51735 0.91849 1.19359 0.86437 0.90863 0.82672
1.86113 1.53046 1.53525 1.46946 1.23130 0.96811 0.99083 0.97479
1.23740 0.98308 0.92240 0.94691 1.61955 1.15736 1.32220 1.08237
1.19802 0.90334 0.90251 0.85150 1.68139 0.97108 1.21950 1.32643
1.23034 0.96607 0.88348 0.91021 1.22027 0.97014 1.03043 0.97519
1.16920 0.92099 0.93053 0.89248 1.23257 0.85793 1.01221 0.98327
1.76295 1.24575 1.10518 1.00984 1.79018 0.94324 1.12697 1.16493
1.47811 1.06544 1.33912 1.18435 0.66499 1.74852 1.25989 1.11161
1.00088 1.21324 0.84774 1.10568 0.99910 1.42768 1.00966 0.99648
0.99080 1.94507 1.74239 1.42974 1.24029 1.94533 1.54050 1.19546
1.66612 1.23053 1.01124 0.94603 0.88477 0.92085 0.76425 0.92424
0.88627 0.92050 0.89465 0.80045 0.82044 0.89098 0.90195
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.89 -23.15 10.38 55.43 0.58 -22.58 16
2 C 0.07 1.79 5.01 -17.82 -0.09 1.71 16
3 Si 0.90 20.13 29.54 -169.99 -5.02 15.11 16
4 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16
5 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16
6 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16
7 C -0.54 -13.91 8.23 -34.44 -0.28 -14.19 16
8 H 0.06 1.65 7.34 -52.49 -0.39 1.26 16
9 C 0.25 6.07 0.99 -90.41 -0.09 5.98 16
10 O -0.59 -15.25 12.93 -35.23 -0.46 -15.71 16
11 C -0.13 -2.95 5.89 -24.87 -0.15 -3.09 16
12 C 0.03 0.70 5.56 -1.90 -0.01 0.69 16
13 N -0.47 -9.53 5.15 -169.28 -0.87 -10.40 16
14 C 0.38 6.76 6.20 -155.02 -0.96 5.80 16
15 N -0.48 -7.54 8.13 -12.51 -0.10 -7.64 16
16 C 0.17 1.80 11.16 -17.62 -0.20 1.61 16
17 C -0.17 -1.72 9.79 -39.10 -0.38 -2.10 16
18 C 0.10 1.34 5.91 -104.62 -0.62 0.72 16
19 C 0.19 2.53 7.94 -156.30 -1.24 1.29 16
20 N -0.25 -3.66 10.77 32.16 0.35 -3.32 16
21 N -0.03 -0.34 13.47 60.35 0.81 0.47 16
22 N -0.22 -1.60 7.90 60.35 0.48 -1.12 16
23 H 0.48 0.83 8.96 -340.36 -3.05 -2.22 16
24 N -0.27 -2.59 12.17 32.17 0.39 -2.19 16
25 C -0.08 -1.29 5.95 -79.25 -0.47 -1.76 16
26 N 0.04 0.81 1.69 34.30 0.06 0.87 16
27 O -0.14 -2.63 16.65 -29.46 -0.49 -3.12 16
28 O -0.12 -2.34 19.13 -29.46 -0.56 -2.90 16
29 C 0.05 1.16 5.83 -2.76 -0.02 1.14 16
30 H 0.27 6.67 8.31 -40.82 -0.34 6.33 16
31 H 0.38 10.06 7.16 45.56 0.33 10.39 16
32 H 0.06 1.35 8.08 -51.93 -0.42 0.93 16
33 H 0.10 2.38 6.66 -51.93 -0.35 2.04 16
34 H 0.06 1.28 8.00 -51.93 -0.42 0.87 16
35 H 0.09 1.78 5.24 -51.93 -0.27 1.51 16
36 H 0.18 1.13 8.06 -52.49 -0.42 0.71 16
37 H 0.16 1.05 7.97 -52.49 -0.42 0.64 16
38 H 0.09 1.97 5.74 -51.93 -0.30 1.67 16
39 H 0.08 1.78 7.96 -51.93 -0.41 1.37 16
LS Contribution 337.16 15.07 5.08 5.08
Total: -1.00 -32.06 337.16 -9.52 -41.58
By element:
Atomic # 1 Polarization: 13.32 SS G_CDS: -5.25 Total: 8.07 kcal
Atomic # 6 Polarization: 2.30 SS G_CDS: -4.51 Total: -2.21 kcal
Atomic # 7 Polarization: -47.60 SS G_CDS: 1.69 Total: -45.91 kcal
Atomic # 8 Polarization: -20.22 SS G_CDS: -1.51 Total: -21.73 kcal
Atomic # 14 Polarization: 20.13 SS G_CDS: -5.02 Total: 15.11 kcal
Total LS contribution 5.08 Total: 5.08 kcal
Total: -32.06 -9.52 -41.58 kcal
The number of atoms in the molecule is 39
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001592673836.mol2 39
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 189.006 kcal
(2) G-P(sol) polarization free energy of solvation -32.065 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 156.942 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.520 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.584 kcal
(6) G-S(sol) free energy of system = (1) + (5) 147.422 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.66 seconds