Wall clock time and date at job start Wed Apr 1 2020 04:38:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86794 * 120.00260 * 2 1 4 4 H 1.48495 * 109.47399 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.47292 * 300.00407 * 3 2 1 6 6 H 1.48508 * 109.46870 * 59.99755 * 3 2 1 7 7 C 1.37880 * 120.00087 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00197 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99650 * 0.02562 * 7 2 1 10 10 O 1.42905 * 110.27644 * 300.70046 * 9 7 2 11 11 C 1.54598 * 110.39454 * 62.84357 * 9 7 2 12 12 C 1.54937 * 102.91763 * 96.99962 * 11 9 7 13 13 N 1.48534 * 103.22777 * 37.41949 * 12 11 9 14 14 C 1.39044 * 110.99730 * 200.27919 * 13 12 11 15 15 N 1.32455 * 119.64845 * 117.39539 * 14 13 12 16 16 C 1.31995 * 121.89058 * 179.97438 * 15 14 13 17 17 C 1.37850 * 120.97449 * 359.97438 * 16 15 14 18 18 C 1.39895 * 119.19111 * 0.02562 * 17 16 15 19 19 C 1.48468 * 120.85714 * 180.02562 * 18 17 16 20 20 N 1.34055 * 126.67251 * 179.68976 * 19 18 17 21 21 N 1.28981 * 107.26612 * 179.83328 * 20 19 18 22 22 N 1.28734 * 108.94344 * 0.42921 * 21 20 19 23 23 H 0.97008 * 125.33881 * 179.72977 * 22 21 20 24 24 N 1.28866 * 109.31824 * 359.72383 * 22 21 20 25 25 C 1.38901 * 119.65120 * 297.11709 * 14 13 12 26 26 N 1.48030 * 120.51828 * 0.02562 * 25 14 13 27 27 O 1.21798 * 120.00179 * 89.99482 * 26 25 14 28 28 O 1.21805 * 119.99725 * 269.99611 * 26 25 14 29 29 C 1.47896 * 105.81950 * 320.78669 * 13 12 11 30 30 H 0.97003 * 119.99693 * 0.02562 * 1 2 3 31 31 H 0.96705 * 113.99788 * 57.91167 * 10 9 7 32 32 H 1.09002 * 110.72612 * 215.35568 * 11 9 7 33 33 H 1.09003 * 110.72462 * 338.64727 * 11 9 7 34 34 H 1.09000 * 110.67119 * 278.97969 * 12 11 9 35 35 H 1.09002 * 110.81274 * 155.91684 * 12 11 9 36 36 H 1.08001 * 119.50640 * 179.97438 * 16 15 14 37 37 H 1.07994 * 120.40551 * 179.97438 * 17 16 15 38 38 H 1.09001 * 109.92230 * 265.98011 * 29 13 12 39 39 H 1.08997 * 109.91883 * 144.68384 * 29 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8905 2.3964 -1.2124 6 1 1.8904 2.3964 1.2125 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0005 10 8 0.4103 -2.5855 1.1529 11 6 0.4094 -2.6353 -1.2891 12 6 1.3151 -3.4968 -2.2045 13 7 1.9380 -4.4580 -1.2588 14 6 3.0984 -5.0043 -1.7957 15 7 4.2609 -4.7900 -1.1981 16 6 5.3892 -5.2873 -1.6690 17 6 5.4026 -6.0574 -2.8122 18 6 4.1987 -6.3110 -3.4782 19 6 4.1702 -7.1360 -4.7122 20 7 3.0886 -7.4557 -5.4368 21 7 3.4907 -8.1786 -6.4264 22 7 4.7666 -8.3285 -6.3432 23 1 5.3138 -8.8342 -6.9643 24 7 5.2027 -7.7012 -5.3054 25 6 3.0256 -5.7737 -2.9499 26 7 1.7235 -6.0153 -3.6113 27 8 1.3248 -5.2484 -4.4695 28 8 1.0509 -6.9810 -3.2974 29 6 2.2341 -3.6840 -0.0338 30 1 -0.4850 0.8401 -0.0004 31 1 -0.2302 -1.8648 1.2274 32 1 -0.5306 -3.1477 -1.0840 33 1 0.2276 -1.6579 -1.7361 34 1 2.0759 -2.8803 -2.6832 35 1 0.7216 -4.0228 -2.9523 36 1 6.3156 -5.0880 -1.1509 37 1 6.3311 -6.4595 -3.1897 38 1 3.2593 -3.3151 -0.0664 39 1 2.0903 -4.3114 0.8457 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001592673836.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:38:14 Heat of formation + Delta-G solvation = 147.421902 kcal Electronic energy + Delta-G solvation = -31179.583436 eV Core-core repulsion = 26744.215568 eV Total energy + Delta-G solvation = -4435.367868 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 347.117 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -45.01525 -42.09884 -40.60375 -38.45572 -36.11673 -35.51547 -34.97600 -34.38056 -32.40331 -32.21481 -31.71938 -28.95674 -28.24657 -26.74408 -25.76655 -25.01486 -24.57852 -22.81283 -22.38038 -20.95714 -20.01513 -19.61910 -18.94076 -18.43630 -17.78331 -17.66464 -17.57505 -16.97285 -16.04128 -15.59906 -15.31326 -14.89979 -14.84640 -14.56832 -14.36191 -13.70637 -13.47009 -13.20981 -12.72084 -12.56188 -12.40790 -11.97033 -11.75477 -11.73041 -11.67760 -11.41166 -11.30830 -11.21905 -11.10703 -10.84317 -10.72914 -10.53239 -10.41958 -10.32548 -10.09325 -9.93005 -9.77679 -9.30419 -8.68845 -8.32925 -8.15902 -6.29172 -4.39573 -0.12480 0.48570 0.68379 0.89845 1.51054 1.69209 1.79978 2.87300 3.11945 3.16975 3.26227 3.29484 3.38612 3.66087 4.10804 4.24766 4.31011 4.52126 4.62346 4.73936 4.88505 4.97376 5.12627 5.36132 5.42500 5.67106 5.74083 5.84328 5.85500 6.02857 6.27286 6.39561 6.59788 6.63458 6.86258 6.93060 7.16186 7.23774 7.42542 7.51676 7.58163 7.71758 7.94104 8.05800 8.64165 9.29665 9.45265 10.76851 Molecular weight = 347.12amu Principal moments of inertia in cm(-1) A = 0.018248 B = 0.003291 C = 0.003133 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1534.074097 B = 8506.202043 C = 8935.851658 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.070 3.930 3 Si 0.901 3.099 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.281 1.281 7 C -0.536 4.536 8 H 0.063 0.937 9 C 0.247 3.753 10 O -0.587 6.587 11 C -0.126 4.126 12 C 0.034 3.966 13 N -0.466 5.466 14 C 0.379 3.621 15 N -0.483 5.483 16 C 0.170 3.830 17 C -0.172 4.172 18 C 0.099 3.901 19 C 0.194 3.806 20 N -0.250 5.250 21 N -0.030 5.030 22 N -0.220 5.220 23 H 0.480 0.520 24 N -0.268 5.268 25 C -0.077 4.077 26 N 0.044 4.956 27 O -0.137 6.137 28 O -0.121 6.121 29 C 0.053 3.947 30 H 0.269 0.731 31 H 0.385 0.615 32 H 0.057 0.943 33 H 0.095 0.905 34 H 0.061 0.939 35 H 0.087 0.913 36 H 0.183 0.817 37 H 0.162 0.838 38 H 0.091 0.909 39 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.957 -13.657 -10.384 21.499 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.133 4.133 3 Si 0.728 3.272 4 H -0.197 1.197 5 H -0.208 1.208 6 H -0.207 1.207 7 C -0.574 4.574 8 H 0.082 0.918 9 C 0.207 3.793 10 O -0.396 6.396 11 C -0.165 4.165 12 C -0.090 4.090 13 N -0.181 5.181 14 C 0.145 3.855 15 N -0.198 5.198 16 C 0.010 3.990 17 C -0.196 4.196 18 C 0.087 3.913 19 C -0.086 4.086 20 N -0.124 5.124 21 N -0.025 5.025 22 N -0.067 5.067 23 H 0.335 0.665 24 N -0.121 5.121 25 C -0.166 4.166 26 N 0.575 4.425 27 O -0.357 6.357 28 O -0.347 6.347 29 C -0.073 4.073 30 H 0.079 0.921 31 H 0.236 0.764 32 H 0.076 0.924 33 H 0.114 0.886 34 H 0.080 0.920 35 H 0.105 0.895 36 H 0.200 0.800 37 H 0.180 0.820 38 H 0.109 0.891 39 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 13.080 -14.088 -9.559 21.470 hybrid contribution 0.905 1.115 -1.254 1.907 sum 13.985 -12.973 -10.813 21.927 Atomic orbital electron populations 1.69655 1.05907 1.27644 1.50014 1.25024 0.95030 0.99554 0.93648 0.86392 0.80091 0.82885 0.77801 1.19677 1.20786 1.20686 1.21732 0.93559 0.90393 1.51735 0.91849 1.19359 0.86437 0.90863 0.82672 1.86113 1.53046 1.53525 1.46946 1.23130 0.96811 0.99083 0.97479 1.23740 0.98308 0.92240 0.94691 1.61955 1.15736 1.32220 1.08237 1.19802 0.90334 0.90251 0.85150 1.68139 0.97108 1.21950 1.32643 1.23034 0.96607 0.88348 0.91021 1.22027 0.97014 1.03043 0.97519 1.16920 0.92099 0.93053 0.89248 1.23257 0.85793 1.01221 0.98327 1.76295 1.24575 1.10518 1.00984 1.79018 0.94324 1.12697 1.16493 1.47811 1.06544 1.33912 1.18435 0.66499 1.74852 1.25989 1.11161 1.00088 1.21324 0.84774 1.10568 0.99910 1.42768 1.00966 0.99648 0.99080 1.94507 1.74239 1.42974 1.24029 1.94533 1.54050 1.19546 1.66612 1.23053 1.01124 0.94603 0.88477 0.92085 0.76425 0.92424 0.88627 0.92050 0.89465 0.80045 0.82044 0.89098 0.90195 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.15 10.38 55.43 0.58 -22.58 16 2 C 0.07 1.79 5.01 -17.82 -0.09 1.71 16 3 Si 0.90 20.13 29.54 -169.99 -5.02 15.11 16 4 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 5 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 6 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 7 C -0.54 -13.91 8.23 -34.44 -0.28 -14.19 16 8 H 0.06 1.65 7.34 -52.49 -0.39 1.26 16 9 C 0.25 6.07 0.99 -90.41 -0.09 5.98 16 10 O -0.59 -15.25 12.93 -35.23 -0.46 -15.71 16 11 C -0.13 -2.95 5.89 -24.87 -0.15 -3.09 16 12 C 0.03 0.70 5.56 -1.90 -0.01 0.69 16 13 N -0.47 -9.53 5.15 -169.28 -0.87 -10.40 16 14 C 0.38 6.76 6.20 -155.02 -0.96 5.80 16 15 N -0.48 -7.54 8.13 -12.51 -0.10 -7.64 16 16 C 0.17 1.80 11.16 -17.62 -0.20 1.61 16 17 C -0.17 -1.72 9.79 -39.10 -0.38 -2.10 16 18 C 0.10 1.34 5.91 -104.62 -0.62 0.72 16 19 C 0.19 2.53 7.94 -156.30 -1.24 1.29 16 20 N -0.25 -3.66 10.77 32.16 0.35 -3.32 16 21 N -0.03 -0.34 13.47 60.35 0.81 0.47 16 22 N -0.22 -1.60 7.90 60.35 0.48 -1.12 16 23 H 0.48 0.83 8.96 -340.36 -3.05 -2.22 16 24 N -0.27 -2.59 12.17 32.17 0.39 -2.19 16 25 C -0.08 -1.29 5.95 -79.25 -0.47 -1.76 16 26 N 0.04 0.81 1.69 34.30 0.06 0.87 16 27 O -0.14 -2.63 16.65 -29.46 -0.49 -3.12 16 28 O -0.12 -2.34 19.13 -29.46 -0.56 -2.90 16 29 C 0.05 1.16 5.83 -2.76 -0.02 1.14 16 30 H 0.27 6.67 8.31 -40.82 -0.34 6.33 16 31 H 0.38 10.06 7.16 45.56 0.33 10.39 16 32 H 0.06 1.35 8.08 -51.93 -0.42 0.93 16 33 H 0.10 2.38 6.66 -51.93 -0.35 2.04 16 34 H 0.06 1.28 8.00 -51.93 -0.42 0.87 16 35 H 0.09 1.78 5.24 -51.93 -0.27 1.51 16 36 H 0.18 1.13 8.06 -52.49 -0.42 0.71 16 37 H 0.16 1.05 7.97 -52.49 -0.42 0.64 16 38 H 0.09 1.97 5.74 -51.93 -0.30 1.67 16 39 H 0.08 1.78 7.96 -51.93 -0.41 1.37 16 LS Contribution 337.16 15.07 5.08 5.08 Total: -1.00 -32.06 337.16 -9.52 -41.58 By element: Atomic # 1 Polarization: 13.32 SS G_CDS: -5.25 Total: 8.07 kcal Atomic # 6 Polarization: 2.30 SS G_CDS: -4.51 Total: -2.21 kcal Atomic # 7 Polarization: -47.60 SS G_CDS: 1.69 Total: -45.91 kcal Atomic # 8 Polarization: -20.22 SS G_CDS: -1.51 Total: -21.73 kcal Atomic # 14 Polarization: 20.13 SS G_CDS: -5.02 Total: 15.11 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -32.06 -9.52 -41.58 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592673836.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 189.006 kcal (2) G-P(sol) polarization free energy of solvation -32.065 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 156.942 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.520 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.584 kcal (6) G-S(sol) free energy of system = (1) + (5) 147.422 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds