Wall clock time and date at job start Wed Apr 1 2020 04:38:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86794 * 120.00260 * 2 1 4 4 H 1.48495 * 109.47399 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.47292 * 300.00407 * 3 2 1 6 6 H 1.48508 * 109.46870 * 59.99755 * 3 2 1 7 7 C 1.37880 * 120.00087 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00197 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99650 * 0.02562 * 7 2 1 10 10 O 1.42905 * 110.27644 * 300.70046 * 9 7 2 11 11 C 1.54598 * 110.39454 * 62.84357 * 9 7 2 12 12 C 1.54937 * 102.91763 * 96.99962 * 11 9 7 13 13 N 1.48534 * 103.22777 * 37.41949 * 12 11 9 14 14 C 1.39044 * 110.99730 * 200.27919 * 13 12 11 15 15 N 1.32455 * 119.64845 * 117.39539 * 14 13 12 16 16 C 1.31995 * 121.89058 * 179.97438 * 15 14 13 17 17 C 1.37850 * 120.97449 * 359.97438 * 16 15 14 18 18 C 1.39895 * 119.19111 * 0.02562 * 17 16 15 19 19 C 1.48468 * 120.85714 * 180.02562 * 18 17 16 20 20 N 1.34055 * 126.67251 * 179.68976 * 19 18 17 21 21 N 1.28981 * 107.26612 * 179.83328 * 20 19 18 22 22 N 1.28734 * 108.94344 * 0.42921 * 21 20 19 23 23 H 0.97008 * 125.33881 * 179.72977 * 22 21 20 24 24 N 1.28866 * 109.31824 * 359.72383 * 22 21 20 25 25 C 1.38901 * 119.65120 * 297.11709 * 14 13 12 26 26 N 1.48030 * 120.51828 * 0.02562 * 25 14 13 27 27 O 1.21798 * 120.00179 * 89.99482 * 26 25 14 28 28 O 1.21805 * 119.99725 * 269.99611 * 26 25 14 29 29 C 1.47896 * 105.81950 * 320.78669 * 13 12 11 30 30 H 0.97003 * 119.99693 * 0.02562 * 1 2 3 31 31 H 0.96705 * 113.99788 * 57.91167 * 10 9 7 32 32 H 1.09002 * 110.72612 * 215.35568 * 11 9 7 33 33 H 1.09003 * 110.72462 * 338.64727 * 11 9 7 34 34 H 1.09000 * 110.67119 * 278.97969 * 12 11 9 35 35 H 1.09002 * 110.81274 * 155.91684 * 12 11 9 36 36 H 1.08001 * 119.50640 * 179.97438 * 16 15 14 37 37 H 1.07994 * 120.40551 * 179.97438 * 17 16 15 38 38 H 1.09001 * 109.92230 * 265.98011 * 29 13 12 39 39 H 1.08997 * 109.91883 * 144.68384 * 29 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8905 2.3964 -1.2124 6 1 1.8904 2.3964 1.2125 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0005 10 8 0.4103 -2.5855 1.1529 11 6 0.4094 -2.6353 -1.2891 12 6 1.3151 -3.4968 -2.2045 13 7 1.9380 -4.4580 -1.2588 14 6 3.0984 -5.0043 -1.7957 15 7 4.2609 -4.7900 -1.1981 16 6 5.3892 -5.2873 -1.6690 17 6 5.4026 -6.0574 -2.8122 18 6 4.1987 -6.3110 -3.4782 19 6 4.1702 -7.1360 -4.7122 20 7 3.0886 -7.4557 -5.4368 21 7 3.4907 -8.1786 -6.4264 22 7 4.7666 -8.3285 -6.3432 23 1 5.3138 -8.8342 -6.9643 24 7 5.2027 -7.7012 -5.3054 25 6 3.0256 -5.7737 -2.9499 26 7 1.7235 -6.0153 -3.6113 27 8 1.3248 -5.2484 -4.4695 28 8 1.0509 -6.9810 -3.2974 29 6 2.2341 -3.6840 -0.0338 30 1 -0.4850 0.8401 -0.0004 31 1 -0.2302 -1.8648 1.2274 32 1 -0.5306 -3.1477 -1.0840 33 1 0.2276 -1.6579 -1.7361 34 1 2.0759 -2.8803 -2.6832 35 1 0.7216 -4.0228 -2.9523 36 1 6.3156 -5.0880 -1.1509 37 1 6.3311 -6.4595 -3.1897 38 1 3.2593 -3.3151 -0.0664 39 1 2.0903 -4.3114 0.8457 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001592673836.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:38:12 Heat of formation + Delta-G solvation = 122.771308 kcal Electronic energy + Delta-G solvation = -31180.652366 eV Core-core repulsion = 26744.215568 eV Total energy + Delta-G solvation = -4436.436798 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 347.117 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -45.84985 -43.42348 -41.87914 -40.01419 -37.54437 -37.08413 -36.06074 -35.33938 -34.21699 -33.52431 -32.99115 -30.48253 -29.99518 -27.94656 -27.23137 -26.14223 -25.84073 -24.09427 -23.56105 -22.46776 -21.46550 -20.82588 -20.18009 -19.83773 -19.31055 -18.84363 -18.55985 -18.48994 -17.37020 -17.12705 -16.90707 -16.41160 -15.88037 -15.74288 -15.54385 -15.41419 -14.91010 -14.54311 -14.29612 -13.97240 -13.57126 -13.49214 -13.26634 -13.03784 -12.97662 -12.78088 -12.68862 -12.62788 -12.58308 -12.53727 -12.33458 -12.26492 -12.18595 -11.97108 -11.35650 -11.21369 -11.11174 -10.94077 -10.65064 -10.20483 -9.67611 -8.24465 -6.42289 -1.11749 -0.59604 -0.54465 -0.15689 0.25351 0.83103 1.05561 1.40236 1.43801 1.53962 1.91594 2.07238 2.28020 2.38236 2.64992 2.94156 3.07749 3.21365 3.39376 3.61206 3.73872 3.84179 3.94080 3.95549 4.01487 4.19185 4.28840 4.52647 4.54774 4.66885 4.85223 4.94324 5.06937 5.14834 5.20680 5.27976 5.37316 5.48422 5.65967 5.74031 6.08503 6.40814 6.47071 6.64114 6.73357 7.29000 7.40310 8.80824 Molecular weight = 347.12amu Principal moments of inertia in cm(-1) A = 0.018248 B = 0.003291 C = 0.003133 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1534.074097 B = 8506.202043 C = 8935.851658 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C 0.030 3.970 3 Si 0.962 3.038 4 H -0.268 1.268 5 H -0.279 1.279 6 H -0.279 1.279 7 C -0.555 4.555 8 H 0.060 0.940 9 C 0.233 3.767 10 O -0.597 6.597 11 C -0.119 4.119 12 C 0.049 3.951 13 N -0.479 5.479 14 C 0.354 3.646 15 N -0.505 5.505 16 C 0.181 3.819 17 C -0.132 4.132 18 C 0.089 3.911 19 C 0.175 3.825 20 N -0.297 5.297 21 N -0.039 5.039 22 N -0.182 5.182 23 H 0.502 0.498 24 N -0.244 5.244 25 C -0.095 4.095 26 N 0.049 4.951 27 O -0.154 6.154 28 O -0.145 6.145 29 C 0.068 3.932 30 H 0.272 0.728 31 H 0.379 0.621 32 H 0.046 0.954 33 H 0.075 0.925 34 H 0.057 0.943 35 H 0.087 0.913 36 H 0.236 0.764 37 H 0.210 0.790 38 H 0.094 0.906 39 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.014 -14.424 -11.247 24.980 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.171 4.171 3 Si 0.788 3.212 4 H -0.193 1.193 5 H -0.205 1.205 6 H -0.204 1.204 7 C -0.592 4.592 8 H 0.078 0.922 9 C 0.193 3.807 10 O -0.406 6.406 11 C -0.158 4.158 12 C -0.075 4.075 13 N -0.196 5.196 14 C 0.122 3.878 15 N -0.220 5.220 16 C 0.022 3.978 17 C -0.155 4.155 18 C 0.077 3.923 19 C -0.105 4.105 20 N -0.169 5.169 21 N -0.034 5.034 22 N -0.035 5.035 23 H 0.364 0.636 24 N -0.098 5.098 25 C -0.184 4.184 26 N 0.578 4.422 27 O -0.373 6.373 28 O -0.369 6.369 29 C -0.058 4.058 30 H 0.081 0.919 31 H 0.230 0.770 32 H 0.065 0.935 33 H 0.093 0.907 34 H 0.075 0.925 35 H 0.106 0.894 36 H 0.252 0.748 37 H 0.227 0.773 38 H 0.112 0.888 39 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 17.143 -14.910 -10.453 25.009 hybrid contribution -0.107 1.232 -1.084 1.644 sum 17.036 -13.678 -11.537 24.707 Atomic orbital electron populations 1.69741 1.06911 1.28406 1.49906 1.25720 0.95816 1.02390 0.93169 0.85441 0.78998 0.79081 0.77713 1.19255 1.20481 1.20435 1.21894 0.93475 0.91342 1.52535 0.92229 1.19596 0.86830 0.91881 0.82378 1.86106 1.53182 1.53337 1.47966 1.22919 0.96809 0.98356 0.97720 1.23458 0.97696 0.92113 0.94231 1.61887 1.18280 1.31940 1.07473 1.19629 0.90483 0.91341 0.86351 1.68116 0.97638 1.23151 1.33079 1.23989 0.96551 0.86409 0.90876 1.22628 0.97135 1.00041 0.95686 1.17242 0.91990 0.93139 0.89903 1.23219 0.86218 1.02312 0.98706 1.76289 1.26246 1.12102 1.02310 1.78962 0.95606 1.12793 1.16008 1.47910 1.05876 1.32066 1.17664 0.63637 1.74800 1.24578 1.10392 1.00011 1.21389 0.84385 1.12321 1.00264 1.43039 1.01590 0.98970 0.98598 1.94476 1.74988 1.43060 1.24820 1.94506 1.55176 1.20172 1.67071 1.22771 1.00343 0.93553 0.89151 0.91889 0.77024 0.93547 0.90675 0.92509 0.89448 0.74774 0.77332 0.88838 0.91146 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -48.20 10.38 21.45 0.22 -47.98 16 2 C 0.03 1.55 5.01 84.65 0.42 1.97 16 3 Si 0.96 41.29 29.54 68.60 2.03 43.31 16 4 H -0.27 -11.24 7.11 99.48 0.71 -10.54 16 5 H -0.28 -11.78 7.11 99.48 0.71 -11.07 16 6 H -0.28 -11.79 7.11 99.48 0.71 -11.08 16 7 C -0.55 -29.27 8.23 25.60 0.21 -29.05 16 8 H 0.06 3.12 7.34 -2.91 -0.02 3.09 16 9 C 0.23 11.83 0.99 -10.66 -0.01 11.82 16 10 O -0.60 -32.19 12.93 -148.98 -1.93 -34.12 16 11 C -0.12 -5.84 5.89 31.80 0.19 -5.65 16 12 C 0.05 2.14 5.56 86.65 0.48 2.63 16 13 N -0.48 -20.12 5.15 -689.50 -3.55 -23.68 16 14 C 0.35 12.54 6.20 132.98 0.83 13.37 16 15 N -0.50 -14.72 8.13 -193.50 -1.57 -16.29 16 16 C 0.18 3.01 11.16 84.58 0.94 3.96 16 17 C -0.13 -1.99 9.79 22.58 0.22 -1.77 16 18 C 0.09 2.21 5.91 -19.86 -0.12 2.10 16 19 C 0.18 4.19 7.94 137.38 1.09 5.28 16 20 N -0.30 -8.47 10.77 -52.17 -0.56 -9.03 16 21 N -0.04 -0.82 13.47 37.02 0.50 -0.32 16 22 N -0.18 -2.08 7.90 37.02 0.29 -1.79 16 23 H 0.50 -0.12 8.96 -347.53 -3.12 -3.23 16 24 N -0.24 -3.80 12.17 -52.12 -0.63 -4.44 16 25 C -0.09 -3.16 5.95 36.82 0.22 -2.94 16 26 N 0.05 1.89 1.69 -45.39 -0.08 1.81 16 27 O -0.15 -6.13 16.65 18.89 0.31 -5.82 16 28 O -0.15 -5.87 19.13 18.88 0.36 -5.51 16 29 C 0.07 3.04 5.83 86.45 0.50 3.55 16 30 H 0.27 13.64 8.31 -92.71 -0.77 12.87 16 31 H 0.38 20.71 7.16 -74.05 -0.53 20.18 16 32 H 0.05 2.31 8.08 -2.39 -0.02 2.29 16 33 H 0.07 3.93 6.66 -2.39 -0.02 3.91 16 34 H 0.06 2.46 8.00 -2.39 -0.02 2.44 16 35 H 0.09 3.77 5.24 -2.39 -0.01 3.75 16 36 H 0.24 1.35 8.06 -2.91 -0.02 1.32 16 37 H 0.21 1.22 7.97 -2.91 -0.02 1.19 16 38 H 0.09 4.07 5.74 -2.39 -0.01 4.06 16 39 H 0.07 3.23 7.96 -2.39 -0.02 3.21 16 Total: -1.00 -74.09 337.16 -2.09 -76.18 By element: Atomic # 1 Polarization: 24.86 SS G_CDS: -2.46 Total: 22.40 kcal Atomic # 6 Polarization: 0.28 SS G_CDS: 4.98 Total: 5.25 kcal Atomic # 7 Polarization: -96.33 SS G_CDS: -5.38 Total: -101.71 kcal Atomic # 8 Polarization: -44.19 SS G_CDS: -1.25 Total: -45.44 kcal Atomic # 14 Polarization: 41.29 SS G_CDS: 2.03 Total: 43.31 kcal Total: -74.09 -2.09 -76.18 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592673836.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 198.956 kcal (2) G-P(sol) polarization free energy of solvation -74.092 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 124.864 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.092 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.185 kcal (6) G-S(sol) free energy of system = (1) + (5) 122.771 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds