Wall clock time and date at job start Wed Apr 1 2020 04:38:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 119.99772 * 2 1 4 4 H 1.48504 * 109.47266 * 240.00644 * 3 2 1 5 5 H 1.48504 * 109.46970 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.47383 * 120.00051 * 3 2 1 7 7 C 1.37871 * 120.00482 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00483 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99694 * 359.71466 * 7 2 1 10 10 O 1.42907 * 110.28715 * 60.95647 * 9 7 2 11 11 C 1.54262 * 110.32773 * 298.82637 * 9 7 2 12 12 C 1.54376 * 105.06058 * 241.10056 * 11 9 7 13 13 N 1.48566 * 104.59503 * 23.85341 * 12 11 9 14 14 C 1.39031 * 110.99899 * 200.95564 * 13 12 11 15 15 N 1.32459 * 119.64869 * 119.85407 * 14 13 12 16 16 C 1.31982 * 121.89276 * 179.75123 * 15 14 13 17 17 C 1.37856 * 120.97798 * 0.52394 * 16 15 14 18 18 C 1.39897 * 119.18807 * 359.74431 * 17 16 15 19 19 C 1.48466 * 120.86111 * 179.97438 * 18 17 16 20 20 N 1.34043 * 126.67372 * 180.02562 * 19 18 17 21 21 N 1.28991 * 107.26651 * 179.97438 * 20 19 18 22 22 N 1.28728 * 108.94248 * 359.97438 * 21 20 19 23 23 H 0.97003 * 125.34062 * 180.02562 * 22 21 20 24 24 N 1.28874 * 109.32058 * 359.73175 * 22 21 20 25 25 C 1.38898 * 119.65264 * 300.12613 * 14 13 12 26 26 N 1.48025 * 120.52330 * 359.95633 * 25 14 13 27 27 O 1.21799 * 119.99678 * 89.99588 * 26 25 14 28 28 O 1.21802 * 119.99789 * 270.00161 * 26 25 14 29 29 C 1.48557 * 104.22271 * 320.51560 * 13 12 11 30 30 H 0.96995 * 120.00207 * 359.97438 * 1 2 3 31 31 H 0.96701 * 113.99400 * 300.69960 * 10 9 7 32 32 H 1.09000 * 110.31956 * 359.97438 * 11 9 7 33 33 H 1.08996 * 110.32326 * 122.20880 * 11 9 7 34 34 H 1.09006 * 110.41162 * 142.62930 * 12 11 9 35 35 H 1.08995 * 110.41580 * 264.95856 * 12 11 9 36 36 H 1.08002 * 119.51329 * 180.29339 * 16 15 14 37 37 H 1.07996 * 120.40977 * 179.76654 * 17 16 15 38 38 H 1.08997 * 110.41171 * 280.70763 * 29 13 12 39 39 H 1.08994 * 110.41722 * 158.25775 * 29 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1027 1.6966 -1.2126 5 1 1.2840 2.7465 0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0046 -1.1939 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2511 -2.4991 0.0054 10 8 0.4348 -2.6052 -1.1628 11 6 0.3847 -2.6119 1.2767 12 6 0.9181 -3.8574 2.0165 13 7 2.3138 -4.0119 1.5313 14 6 2.7678 -5.3115 1.7256 15 7 3.1446 -6.0366 0.6831 16 6 3.5872 -7.2728 0.8169 17 6 3.6656 -7.8679 2.0579 18 6 3.2735 -7.1429 3.1883 19 6 3.3422 -7.7476 4.5425 20 7 2.9980 -7.1630 5.6986 21 7 3.2057 -8.0217 6.6385 22 7 3.6607 -9.1081 6.1189 23 1 3.8974 -9.9095 6.6116 24 7 3.7466 -8.9661 4.8409 25 6 2.8161 -5.8378 3.0101 26 7 2.3893 -5.0257 4.1718 27 8 1.2283 -5.0516 4.5392 28 8 3.1990 -4.3316 4.7601 29 6 2.2353 -3.6860 0.0841 30 1 -0.4850 0.8400 0.0004 31 1 -0.2182 -1.8976 -1.2518 32 1 0.5047 -1.7234 1.8966 33 1 -0.6630 -2.7500 1.0097 34 1 0.9061 -3.6937 3.0941 35 1 0.3252 -4.7352 1.7595 36 1 3.8889 -7.8277 -0.0592 37 1 4.0256 -8.8814 2.1564 38 1 1.8497 -4.5373 -0.4769 39 1 3.2149 -3.3931 -0.2934 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001592673837.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:38:19 Heat of formation + Delta-G solvation = 148.452929 kcal Electronic energy + Delta-G solvation = -31154.786100 eV Core-core repulsion = 26719.462941 eV Total energy + Delta-G solvation = -4435.323159 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 347.117 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -45.02384 -42.11982 -40.60155 -38.48529 -36.11253 -35.53449 -34.99573 -34.39632 -32.41104 -32.16269 -31.74033 -28.96283 -28.28998 -26.77328 -25.74350 -25.01598 -24.54379 -22.84723 -22.37423 -20.99237 -20.01245 -19.65266 -18.91422 -18.42879 -17.67501 -17.62729 -17.60083 -17.11884 -16.08231 -15.63110 -15.24365 -14.87291 -14.82196 -14.57668 -14.18332 -13.92710 -13.49702 -13.26657 -12.73671 -12.52391 -12.30270 -12.02131 -11.84719 -11.77064 -11.70248 -11.41685 -11.28068 -11.21306 -11.03685 -10.90568 -10.69542 -10.49816 -10.39089 -10.21842 -10.10064 -10.05026 -9.83528 -9.15633 -8.60419 -8.36490 -8.23356 -6.20967 -4.27965 -0.14451 0.46056 0.67321 0.89900 1.50578 1.68328 1.78577 2.85896 3.08895 3.29033 3.33162 3.36035 3.37531 3.62133 4.08201 4.28710 4.34269 4.50441 4.58496 4.71525 4.87299 5.04944 5.10909 5.33573 5.37093 5.56218 5.74278 5.83390 5.84946 5.96363 6.09847 6.34968 6.55904 6.59941 6.71513 6.89946 7.09855 7.31967 7.45083 7.53803 7.57309 7.79365 7.94150 8.10189 8.74172 9.34500 9.45142 10.86467 Molecular weight = 347.12amu Principal moments of inertia in cm(-1) A = 0.019199 B = 0.003276 C = 0.003036 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1458.031240 B = 8544.329807 C = 9219.935750 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.069 3.931 3 Si 0.901 3.099 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.527 4.527 8 H 0.063 0.937 9 C 0.249 3.751 10 O -0.590 6.590 11 C -0.119 4.119 12 C 0.024 3.976 13 N -0.447 5.447 14 C 0.375 3.625 15 N -0.485 5.485 16 C 0.170 3.830 17 C -0.173 4.173 18 C 0.100 3.900 19 C 0.194 3.806 20 N -0.250 5.250 21 N -0.030 5.030 22 N -0.220 5.220 23 H 0.480 0.520 24 N -0.269 5.269 25 C -0.078 4.078 26 N 0.043 4.957 27 O -0.140 6.140 28 O -0.116 6.116 29 C 0.066 3.934 30 H 0.268 0.732 31 H 0.385 0.615 32 H 0.084 0.916 33 H 0.065 0.935 34 H 0.091 0.909 35 H 0.051 0.949 36 H 0.183 0.817 37 H 0.162 0.838 38 H 0.066 0.934 39 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.238 -20.706 7.296 22.823 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.133 4.133 3 Si 0.729 3.271 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.200 1.200 7 C -0.565 4.565 8 H 0.081 0.919 9 C 0.209 3.791 10 O -0.399 6.399 11 C -0.158 4.158 12 C -0.100 4.100 13 N -0.163 5.163 14 C 0.141 3.859 15 N -0.201 5.201 16 C 0.010 3.990 17 C -0.197 4.197 18 C 0.088 3.912 19 C -0.086 4.086 20 N -0.123 5.123 21 N -0.025 5.025 22 N -0.067 5.067 23 H 0.335 0.665 24 N -0.121 5.121 25 C -0.168 4.168 26 N 0.574 4.426 27 O -0.359 6.359 28 O -0.343 6.343 29 C -0.059 4.059 30 H 0.078 0.922 31 H 0.236 0.764 32 H 0.103 0.897 33 H 0.083 0.917 34 H 0.109 0.891 35 H 0.070 0.930 36 H 0.199 0.801 37 H 0.179 0.821 38 H 0.085 0.915 39 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 6.796 -20.696 6.700 22.790 hybrid contribution 0.021 0.184 0.878 0.897 sum 6.817 -20.512 7.577 22.905 Atomic orbital electron populations 1.69664 1.05907 1.27728 1.50470 1.24997 0.95027 0.99531 0.93749 0.86493 0.79581 0.82177 0.78863 1.20117 1.21175 1.19957 1.21569 0.93590 0.90184 1.51192 0.91869 1.19259 0.86366 0.91401 0.82095 1.86076 1.53206 1.54471 1.46179 1.22962 0.99081 0.94604 0.99137 1.23775 0.83380 1.00836 1.01967 1.62323 1.22340 1.11644 1.19958 1.19909 0.91089 0.89440 0.85462 1.68167 1.14452 1.07377 1.30083 1.23016 0.89167 0.89729 0.97126 1.22022 1.04484 1.02389 0.90834 1.16923 0.96100 0.89640 0.88546 1.23254 1.02109 0.88563 0.94719 1.76303 1.17291 1.22692 0.96036 1.79026 1.10854 0.90791 1.21824 1.47812 1.40539 1.15216 1.03120 0.66496 1.74855 1.21081 1.19088 0.97091 1.21336 1.14540 0.93264 0.87626 1.42769 1.00500 0.99242 1.00058 1.94497 1.02893 1.69707 1.68755 1.94551 1.49477 1.36329 1.53987 1.23040 1.01881 0.98674 0.82289 0.92169 0.76352 0.89705 0.91680 0.89130 0.93030 0.80055 0.82051 0.91541 0.89256 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -23.75 10.80 55.43 0.60 -23.15 16 2 C 0.07 1.82 5.01 -17.82 -0.09 1.73 16 3 Si 0.90 20.95 29.54 -169.99 -5.02 15.93 16 4 H -0.28 -6.39 7.11 56.52 0.40 -5.98 16 5 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 6 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 7 C -0.53 -14.12 8.10 -34.44 -0.28 -14.40 16 8 H 0.06 1.71 7.54 -52.49 -0.40 1.32 16 9 C 0.25 6.12 1.06 -90.38 -0.10 6.02 16 10 O -0.59 -14.94 12.95 -35.23 -0.46 -15.40 16 11 C -0.12 -2.77 5.55 -25.35 -0.14 -2.91 16 12 C 0.02 0.50 5.30 -2.18 -0.01 0.49 16 13 N -0.45 -9.21 5.29 -168.83 -0.89 -10.11 16 14 C 0.38 6.63 6.23 -155.03 -0.97 5.66 16 15 N -0.49 -7.34 8.46 -12.52 -0.11 -7.45 16 16 C 0.17 1.72 11.16 -17.63 -0.20 1.53 16 17 C -0.17 -1.67 9.79 -39.10 -0.38 -2.05 16 18 C 0.10 1.34 5.91 -104.61 -0.62 0.72 16 19 C 0.19 2.50 7.94 -156.30 -1.24 1.26 16 20 N -0.25 -3.66 10.77 32.16 0.35 -3.31 16 21 N -0.03 -0.33 13.47 60.35 0.81 0.48 16 22 N -0.22 -1.58 7.90 60.35 0.48 -1.11 16 23 H 0.48 0.79 8.96 -340.36 -3.05 -2.26 16 24 N -0.27 -2.55 12.17 32.17 0.39 -2.16 16 25 C -0.08 -1.31 5.93 -79.25 -0.47 -1.78 16 26 N 0.04 0.80 1.57 34.30 0.05 0.85 16 27 O -0.14 -2.67 16.55 -29.46 -0.49 -3.16 16 28 O -0.12 -2.30 19.12 -29.46 -0.56 -2.86 16 29 C 0.07 1.45 5.14 -2.18 -0.01 1.44 16 30 H 0.27 6.85 8.31 -40.82 -0.34 6.51 16 31 H 0.39 9.86 7.31 45.56 0.33 10.19 16 32 H 0.08 2.16 7.22 -51.93 -0.38 1.79 16 33 H 0.06 1.49 7.98 -51.93 -0.41 1.08 16 34 H 0.09 1.87 5.14 -51.93 -0.27 1.61 16 35 H 0.05 1.00 7.98 -51.93 -0.41 0.58 16 36 H 0.18 1.03 8.06 -52.49 -0.42 0.61 16 37 H 0.16 1.01 7.97 -52.49 -0.42 0.59 16 38 H 0.07 1.40 7.18 -51.93 -0.37 1.03 16 39 H 0.09 1.98 7.67 -51.93 -0.40 1.58 16 LS Contribution 338.36 15.07 5.10 5.10 Total: -1.00 -32.63 338.36 -9.58 -42.21 By element: Atomic # 1 Polarization: 11.76 SS G_CDS: -5.33 Total: 6.43 kcal Atomic # 6 Polarization: 2.20 SS G_CDS: -4.50 Total: -2.30 kcal Atomic # 7 Polarization: -47.63 SS G_CDS: 1.68 Total: -45.95 kcal Atomic # 8 Polarization: -19.91 SS G_CDS: -1.51 Total: -21.42 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.02 Total: 15.93 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -32.63 -9.58 -42.21 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592673837.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 190.662 kcal (2) G-P(sol) polarization free energy of solvation -32.627 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 158.035 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.582 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.209 kcal (6) G-S(sol) free energy of system = (1) + (5) 148.453 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds