Wall clock time and date at job start Wed Apr 1 2020 04:38:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 119.99772 * 2 1 4 4 H 1.48504 * 109.47266 * 240.00644 * 3 2 1 5 5 H 1.48504 * 109.46970 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.47383 * 120.00051 * 3 2 1 7 7 C 1.37871 * 120.00482 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00483 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99694 * 359.71466 * 7 2 1 10 10 O 1.42907 * 110.28715 * 60.95647 * 9 7 2 11 11 C 1.54262 * 110.32773 * 298.82637 * 9 7 2 12 12 C 1.54376 * 105.06058 * 241.10056 * 11 9 7 13 13 N 1.48566 * 104.59503 * 23.85341 * 12 11 9 14 14 C 1.39031 * 110.99899 * 200.95564 * 13 12 11 15 15 N 1.32459 * 119.64869 * 119.85407 * 14 13 12 16 16 C 1.31982 * 121.89276 * 179.75123 * 15 14 13 17 17 C 1.37856 * 120.97798 * 0.52394 * 16 15 14 18 18 C 1.39897 * 119.18807 * 359.74431 * 17 16 15 19 19 C 1.48466 * 120.86111 * 179.97438 * 18 17 16 20 20 N 1.34043 * 126.67372 * 180.02562 * 19 18 17 21 21 N 1.28991 * 107.26651 * 179.97438 * 20 19 18 22 22 N 1.28728 * 108.94248 * 359.97438 * 21 20 19 23 23 H 0.97003 * 125.34062 * 180.02562 * 22 21 20 24 24 N 1.28874 * 109.32058 * 359.73175 * 22 21 20 25 25 C 1.38898 * 119.65264 * 300.12613 * 14 13 12 26 26 N 1.48025 * 120.52330 * 359.95633 * 25 14 13 27 27 O 1.21799 * 119.99678 * 89.99588 * 26 25 14 28 28 O 1.21802 * 119.99789 * 270.00161 * 26 25 14 29 29 C 1.48557 * 104.22271 * 320.51560 * 13 12 11 30 30 H 0.96995 * 120.00207 * 359.97438 * 1 2 3 31 31 H 0.96701 * 113.99400 * 300.69960 * 10 9 7 32 32 H 1.09000 * 110.31956 * 359.97438 * 11 9 7 33 33 H 1.08996 * 110.32326 * 122.20880 * 11 9 7 34 34 H 1.09006 * 110.41162 * 142.62930 * 12 11 9 35 35 H 1.08995 * 110.41580 * 264.95856 * 12 11 9 36 36 H 1.08002 * 119.51329 * 180.29339 * 16 15 14 37 37 H 1.07996 * 120.40977 * 179.76654 * 17 16 15 38 38 H 1.08997 * 110.41171 * 280.70763 * 29 13 12 39 39 H 1.08994 * 110.41722 * 158.25775 * 29 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1027 1.6966 -1.2126 5 1 1.2840 2.7465 0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0046 -1.1939 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2511 -2.4991 0.0054 10 8 0.4348 -2.6052 -1.1628 11 6 0.3847 -2.6119 1.2767 12 6 0.9181 -3.8574 2.0165 13 7 2.3138 -4.0119 1.5313 14 6 2.7678 -5.3115 1.7256 15 7 3.1446 -6.0366 0.6831 16 6 3.5872 -7.2728 0.8169 17 6 3.6656 -7.8679 2.0579 18 6 3.2735 -7.1429 3.1883 19 6 3.3422 -7.7476 4.5425 20 7 2.9980 -7.1630 5.6986 21 7 3.2057 -8.0217 6.6385 22 7 3.6607 -9.1081 6.1189 23 1 3.8974 -9.9095 6.6116 24 7 3.7466 -8.9661 4.8409 25 6 2.8161 -5.8378 3.0101 26 7 2.3893 -5.0257 4.1718 27 8 1.2283 -5.0516 4.5392 28 8 3.1990 -4.3316 4.7601 29 6 2.2353 -3.6860 0.0841 30 1 -0.4850 0.8400 0.0004 31 1 -0.2182 -1.8976 -1.2518 32 1 0.5047 -1.7234 1.8966 33 1 -0.6630 -2.7500 1.0097 34 1 0.9061 -3.6937 3.0941 35 1 0.3252 -4.7352 1.7595 36 1 3.8889 -7.8277 -0.0592 37 1 4.0256 -8.8814 2.1564 38 1 1.8497 -4.5373 -0.4769 39 1 3.2149 -3.3931 -0.2934 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001592673837.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:38:18 Heat of formation + Delta-G solvation = 122.916891 kcal Electronic energy + Delta-G solvation = -31155.893426 eV Core-core repulsion = 26719.462941 eV Total energy + Delta-G solvation = -4436.430485 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 347.117 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -45.85044 -43.44113 -41.85952 -40.02992 -37.54930 -37.09469 -36.06451 -35.34030 -34.19890 -33.51872 -32.99529 -30.47924 -30.03163 -27.95888 -27.20641 -26.13244 -25.83804 -24.12199 -23.55167 -22.45068 -21.49315 -20.83078 -20.13676 -19.83564 -19.17924 -18.84131 -18.75675 -18.49099 -17.36188 -16.92122 -16.84966 -16.59342 -15.83606 -15.73396 -15.63883 -15.48751 -14.77398 -14.57788 -14.18739 -14.08015 -13.60235 -13.54479 -13.25599 -13.15259 -12.96771 -12.78582 -12.67721 -12.60736 -12.58910 -12.53223 -12.37414 -12.30810 -12.11485 -11.94794 -11.38842 -11.17215 -11.05872 -10.98246 -10.62865 -10.23143 -9.70995 -8.23154 -6.36774 -1.11820 -0.59790 -0.55554 -0.15921 0.25701 0.83072 1.05610 1.41767 1.43453 1.50617 1.90568 2.06697 2.26698 2.39331 2.63965 2.94884 3.09023 3.19914 3.39374 3.61457 3.69250 3.83096 3.89920 3.99720 4.06137 4.12603 4.24043 4.42045 4.55593 4.60431 4.85139 4.87472 4.99666 5.07204 5.17782 5.37190 5.40894 5.52326 5.64979 5.77076 6.10447 6.39545 6.45560 6.66567 6.73274 7.30533 7.39376 8.82671 Molecular weight = 347.12amu Principal moments of inertia in cm(-1) A = 0.019199 B = 0.003276 C = 0.003036 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1458.031240 B = 8544.329807 C = 9219.935750 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C 0.031 3.969 3 Si 0.957 3.043 4 H -0.271 1.271 5 H -0.278 1.278 6 H -0.279 1.279 7 C -0.551 4.551 8 H 0.051 0.949 9 C 0.236 3.764 10 O -0.594 6.594 11 C -0.110 4.110 12 C 0.038 3.962 13 N -0.468 5.468 14 C 0.352 3.648 15 N -0.504 5.504 16 C 0.183 3.817 17 C -0.133 4.133 18 C 0.090 3.910 19 C 0.175 3.825 20 N -0.298 5.298 21 N -0.040 5.040 22 N -0.182 5.182 23 H 0.502 0.498 24 N -0.244 5.244 25 C -0.098 4.098 26 N 0.049 4.951 27 O -0.148 6.148 28 O -0.153 6.153 29 C 0.084 3.916 30 H 0.270 0.730 31 H 0.381 0.619 32 H 0.054 0.946 33 H 0.061 0.939 34 H 0.084 0.916 35 H 0.062 0.938 36 H 0.238 0.762 37 H 0.210 0.790 38 H 0.072 0.928 39 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.773 -24.177 6.764 26.281 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.170 4.170 3 Si 0.782 3.218 4 H -0.197 1.197 5 H -0.203 1.203 6 H -0.204 1.204 7 C -0.589 4.589 8 H 0.070 0.930 9 C 0.196 3.804 10 O -0.402 6.402 11 C -0.149 4.149 12 C -0.086 4.086 13 N -0.184 5.184 14 C 0.120 3.880 15 N -0.219 5.219 16 C 0.023 3.977 17 C -0.156 4.156 18 C 0.078 3.922 19 C -0.105 4.105 20 N -0.170 5.170 21 N -0.034 5.034 22 N -0.035 5.035 23 H 0.364 0.636 24 N -0.098 5.098 25 C -0.187 4.187 26 N 0.577 4.423 27 O -0.369 6.369 28 O -0.375 6.375 29 C -0.042 4.042 30 H 0.080 0.920 31 H 0.231 0.769 32 H 0.072 0.928 33 H 0.079 0.921 34 H 0.102 0.898 35 H 0.080 0.920 36 H 0.254 0.746 37 H 0.227 0.773 38 H 0.090 0.910 39 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 8.377 -24.182 6.213 26.335 hybrid contribution -0.392 0.939 1.045 1.459 sum 7.985 -23.243 7.258 25.626 Atomic orbital electron populations 1.69734 1.06604 1.28350 1.50274 1.25631 0.95867 1.02101 0.93399 0.85635 0.78543 0.79027 0.78564 1.19658 1.20329 1.20418 1.21780 0.93296 0.91761 1.52063 0.93038 1.19424 0.86881 0.92045 0.82049 1.86063 1.53174 1.54181 1.46809 1.22707 0.98855 0.94777 0.98542 1.23521 0.84336 0.99690 1.01068 1.62262 1.22258 1.15066 1.18831 1.19711 0.92840 0.89050 0.86396 1.68170 1.15081 1.09410 1.29262 1.24001 0.86481 0.87884 0.99287 1.22633 1.00450 1.03468 0.89022 1.17247 0.96195 0.88558 0.90197 1.23236 1.03428 0.89504 0.94315 1.76297 1.19075 1.24447 0.97206 1.78970 1.11581 0.91461 1.21412 1.47912 1.37801 1.15153 1.02634 0.63637 1.74803 1.19984 1.17271 0.97692 1.21400 1.16902 0.94402 0.85983 1.43072 1.00011 0.98843 1.00365 1.94457 1.03410 1.69677 1.69382 1.94528 1.49563 1.37855 1.55540 1.22712 1.00307 0.97507 0.83628 0.92012 0.76903 0.92751 0.92075 0.89775 0.91995 0.74594 0.77340 0.91015 0.90221 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -49.24 10.80 21.45 0.23 -49.00 16 2 C 0.03 1.66 5.01 84.65 0.42 2.08 16 3 Si 0.96 43.70 29.54 68.60 2.03 45.72 16 4 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 5 H -0.28 -12.26 7.11 99.48 0.71 -11.55 16 6 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 7 C -0.55 -30.48 8.10 25.60 0.21 -30.27 16 8 H 0.05 2.89 7.54 -2.91 -0.02 2.87 16 9 C 0.24 11.96 1.06 -10.64 -0.01 11.95 16 10 O -0.59 -30.77 12.95 -148.98 -1.93 -32.70 16 11 C -0.11 -5.35 5.55 31.49 0.17 -5.17 16 12 C 0.04 1.64 5.30 86.45 0.46 2.09 16 13 N -0.47 -19.73 5.29 -688.06 -3.64 -23.37 16 14 C 0.35 12.28 6.23 132.98 0.83 13.11 16 15 N -0.50 -14.06 8.46 -193.51 -1.64 -15.69 16 16 C 0.18 2.81 11.16 84.58 0.94 3.76 16 17 C -0.13 -1.89 9.79 22.58 0.22 -1.67 16 18 C 0.09 2.19 5.91 -19.86 -0.12 2.08 16 19 C 0.18 4.15 7.94 137.38 1.09 5.24 16 20 N -0.30 -8.53 10.77 -52.18 -0.56 -9.09 16 21 N -0.04 -0.83 13.47 37.02 0.50 -0.33 16 22 N -0.18 -2.06 7.90 37.02 0.29 -1.77 16 23 H 0.50 -0.17 8.96 -347.53 -3.12 -3.29 16 24 N -0.24 -3.74 12.17 -52.13 -0.63 -4.37 16 25 C -0.10 -3.24 5.93 36.82 0.22 -3.03 16 26 N 0.05 1.89 1.57 -45.39 -0.07 1.82 16 27 O -0.15 -5.90 16.55 18.89 0.31 -5.58 16 28 O -0.15 -6.42 19.12 18.88 0.36 -6.06 16 29 C 0.08 3.74 5.14 86.45 0.44 4.19 16 30 H 0.27 13.99 8.31 -92.71 -0.77 13.22 16 31 H 0.38 20.07 7.31 -74.06 -0.54 19.53 16 32 H 0.05 2.92 7.22 -2.39 -0.02 2.91 16 33 H 0.06 2.93 7.98 -2.39 -0.02 2.91 16 34 H 0.08 3.67 5.14 -2.38 -0.01 3.66 16 35 H 0.06 2.45 7.98 -2.39 -0.02 2.43 16 36 H 0.24 0.99 8.06 -2.91 -0.02 0.97 16 37 H 0.21 1.05 7.97 -2.91 -0.02 1.03 16 38 H 0.07 3.03 7.18 -2.39 -0.02 3.01 16 39 H 0.08 3.62 7.67 -2.39 -0.02 3.60 16 Total: -1.00 -76.02 338.36 -2.35 -78.37 By element: Atomic # 1 Polarization: 20.19 SS G_CDS: -2.48 Total: 17.71 kcal Atomic # 6 Polarization: -0.52 SS G_CDS: 4.88 Total: 4.36 kcal Atomic # 7 Polarization: -96.30 SS G_CDS: -5.52 Total: -101.82 kcal Atomic # 8 Polarization: -43.09 SS G_CDS: -1.26 Total: -44.34 kcal Atomic # 14 Polarization: 43.70 SS G_CDS: 2.03 Total: 45.72 kcal Total: -76.02 -2.35 -78.37 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592673837.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 201.282 kcal (2) G-P(sol) polarization free energy of solvation -76.019 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 125.263 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.346 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.366 kcal (6) G-S(sol) free energy of system = (1) + (5) 122.917 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds