Wall clock time and date at job start Wed Apr 1 2020 05:10:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38053 * 126.29117 * 2 1 4 4 C 1.47413 * 126.41820 * 0.04062 * 3 2 1 5 5 O 1.21612 * 119.99671 * 359.97438 * 4 3 2 6 6 N 1.34777 * 119.99744 * 179.97438 * 4 3 2 7 7 C 1.40007 * 119.99881 * 185.27488 * 6 4 3 8 8 C 1.39060 * 119.96271 * 213.29794 * 7 6 4 9 9 C 1.38117 * 120.28043 * 179.72310 * 8 7 6 10 10 C 1.38329 * 120.20348 * 0.27582 * 9 8 7 11 11 F 1.35093 * 120.03809 * 179.97438 * 10 9 8 12 12 C 1.39870 * 119.91674 * 359.97438 * 10 9 8 13 13 C 1.47579 * 120.13752 * 180.02562 * 12 10 9 14 14 O 1.21483 * 119.99771 * 0.02562 * 13 12 10 15 15 O 1.34729 * 119.99711 * 180.02562 * 13 12 10 16 16 C 1.38482 * 119.96127 * 33.56845 * 7 6 4 17 17 C 1.41299 * 107.16705 * 180.29652 * 3 2 1 18 18 N 1.30446 * 108.02293 * 359.56294 * 17 3 2 19 19 N 1.34269 * 126.29218 * 180.02562 * 2 1 3 20 20 C 1.46494 * 125.75180 * 359.96260 * 19 2 1 21 21 C 1.50700 * 109.46978 * 90.00059 * 20 19 2 22 22 H 1.07997 * 120.00614 * 0.02562 * 21 20 19 23 23 C 1.37881 * 120.00077 * 179.97438 * 21 20 19 24 24 N 1.31518 * 119.99935 * 0.02562 * 23 21 20 25 25 Si 1.86802 * 120.00060 * 180.02562 * 23 21 20 26 26 H 1.48501 * 109.47289 * 359.97438 * 25 23 21 27 27 H 1.48500 * 109.47154 * 120.00542 * 25 23 21 28 28 H 1.48509 * 109.46929 * 240.00400 * 25 23 21 29 29 H 1.08997 * 109.46924 * 89.97000 * 1 2 3 30 30 H 1.09002 * 109.47081 * 209.97355 * 1 2 3 31 31 H 1.09004 * 109.46888 * 329.97478 * 1 2 3 32 32 H 0.96998 * 120.00233 * 5.27600 * 6 4 3 33 33 H 1.08003 * 119.86029 * 359.97438 * 8 7 6 34 34 H 1.08000 * 119.89674 * 180.24831 * 9 8 7 35 35 H 0.96703 * 116.99401 * 179.97438 * 15 13 12 36 36 H 1.07996 * 120.10149 * 359.97438 * 16 7 6 37 37 H 1.07998 * 125.99169 * 179.70466 * 17 3 2 38 38 H 1.09001 * 109.47436 * 209.99362 * 20 19 2 39 39 H 1.08994 * 109.47552 * 330.00050 * 20 19 2 40 40 H 0.96996 * 119.99696 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3241 1.1127 0.0000 4 6 1.8860 2.5202 0.0008 5 8 0.6997 2.7877 0.0012 6 7 2.8002 3.5106 0.0013 7 6 2.3879 4.8438 0.1135 8 6 3.0985 5.8475 -0.5356 9 6 2.6942 7.1643 -0.4340 10 6 1.5822 7.4947 0.3194 11 9 1.1900 8.7838 0.4169 12 6 0.8643 6.4924 0.9801 13 6 -0.3232 6.8394 1.7848 14 8 -0.6793 7.9974 1.8739 15 8 -1.0123 5.8717 2.4204 16 6 1.2762 5.1621 0.8755 17 6 3.6591 0.6498 -0.0070 18 7 3.6341 -0.6544 -0.0014 19 7 2.3018 -1.0822 -0.0005 20 6 1.8501 -2.4758 -0.0003 21 6 1.6946 -2.9536 -1.4211 22 1 1.9109 -2.2861 -2.2421 23 6 1.2770 -4.2433 -1.6730 24 7 1.0141 -5.0564 -0.6733 25 14 1.0849 -4.8357 -3.4341 26 1 1.4397 -3.7367 -4.3676 27 1 1.9842 -5.9941 -3.6676 28 1 -0.3230 -5.2471 -3.6671 29 1 -0.3633 0.0005 -1.0276 30 1 -0.3633 -0.8902 0.5134 31 1 -0.3633 0.8898 0.5142 32 1 3.7438 3.2996 -0.0762 33 1 3.9678 5.5959 -1.1250 34 1 3.2484 7.9384 -0.9440 35 1 -1.7827 6.1477 2.9356 36 1 0.7264 4.3834 1.3830 37 1 4.5450 1.2675 -0.0133 38 1 2.5851 -3.0959 0.5130 39 1 0.8918 -2.5472 0.5140 40 1 0.7200 -5.9635 -0.8505 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001599983662.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:10:52 Heat of formation + Delta-G solvation = -72.395695 kcal Electronic energy + Delta-G solvation = -28987.532460 eV Core-core repulsion = 24490.419873 eV Total energy + Delta-G solvation = -4497.112587 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 347.111 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -49.13296 -41.15412 -40.58747 -39.85576 -38.12379 -36.29028 -34.80259 -33.96118 -32.21640 -31.94444 -31.37552 -29.68048 -27.36518 -26.74577 -25.22013 -23.94006 -23.29627 -22.36764 -21.34939 -20.05242 -19.37545 -18.51941 -18.05561 -17.55522 -17.33536 -16.86349 -16.35849 -16.18952 -16.10067 -15.40201 -15.30446 -15.09371 -14.63338 -14.47228 -14.34990 -14.04553 -13.73913 -13.47580 -13.34880 -13.05414 -12.81184 -12.66422 -12.52273 -12.21531 -11.95058 -11.89198 -11.78899 -11.58736 -11.17858 -10.97052 -10.88868 -10.48286 -10.42427 -10.33769 -10.00263 -9.74986 -9.52534 -8.78112 -8.73413 -8.41625 -8.05425 -6.40613 -4.48784 0.19077 0.77598 1.91522 2.22552 2.62469 2.65377 2.83776 3.12393 3.20647 3.22133 3.24308 3.33543 3.70014 3.83120 4.18423 4.24080 4.52114 4.68576 4.89236 4.93678 4.97202 5.01592 5.10114 5.31800 5.44874 5.59541 5.62461 5.67348 5.75849 5.89244 6.00277 6.05636 6.20746 6.32882 6.41335 6.56533 6.66276 6.81517 7.01097 7.30979 7.46839 7.62394 7.65624 7.69175 8.18030 8.26425 8.56580 9.18686 10.67686 Molecular weight = 347.11amu Principal moments of inertia in cm(-1) A = 0.020330 B = 0.002186 C = 0.002100 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1376.947592 B =12807.558824 C =13333.097519 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C 0.173 3.827 3 C -0.337 4.337 4 C 0.605 3.395 5 O -0.532 6.532 6 N -0.676 5.676 7 C 0.141 3.859 8 C -0.085 4.085 9 C -0.145 4.145 10 C 0.140 3.860 11 F -0.118 7.118 12 C -0.147 4.147 13 C 0.530 3.470 14 O -0.505 6.505 15 O -0.504 6.504 16 C -0.038 4.038 17 C 0.060 3.940 18 N -0.292 5.292 19 N -0.311 5.311 20 C 0.250 3.750 21 C -0.541 4.541 22 H 0.066 0.934 23 C 0.068 3.932 24 N -0.888 5.888 25 Si 0.908 3.092 26 H -0.271 1.271 27 H -0.280 1.280 28 H -0.279 1.279 29 H 0.085 0.915 30 H 0.075 0.925 31 H 0.094 0.906 32 H 0.413 0.587 33 H 0.145 0.855 34 H 0.149 0.851 35 H 0.416 0.584 36 H 0.163 0.837 37 H 0.177 0.823 38 H 0.058 0.942 39 H 0.058 0.942 40 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.908 20.573 3.654 21.096 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.035 3.965 3 C -0.353 4.353 4 C 0.398 3.602 5 O -0.409 6.409 6 N -0.321 5.321 7 C 0.046 3.954 8 C -0.106 4.106 9 C -0.164 4.164 10 C 0.119 3.881 11 F -0.096 7.096 12 C -0.150 4.150 13 C 0.374 3.626 14 O -0.394 6.394 15 O -0.315 6.315 16 C -0.059 4.059 17 C -0.128 4.128 18 N -0.111 5.111 19 N -0.088 5.088 20 C 0.133 3.867 21 C -0.579 4.579 22 H 0.084 0.916 23 C -0.136 4.136 24 N -0.526 5.526 25 Si 0.735 3.265 26 H -0.195 1.195 27 H -0.205 1.205 28 H -0.205 1.205 29 H 0.104 0.896 30 H 0.094 0.906 31 H 0.113 0.887 32 H 0.250 0.750 33 H 0.163 0.837 34 H 0.167 0.833 35 H 0.275 0.725 36 H 0.180 0.820 37 H 0.194 0.806 38 H 0.076 0.924 39 H 0.076 0.924 40 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 2.918 19.427 3.529 19.959 hybrid contribution -0.504 0.495 -0.700 0.994 sum 2.414 19.922 2.829 20.266 Atomic orbital electron populations 1.20614 0.86599 1.04003 1.04137 1.21503 0.95044 0.86442 0.93467 1.19467 0.93369 0.91710 1.30740 1.17461 0.84837 0.83956 0.73969 1.90741 1.16411 1.83972 1.49787 1.43383 1.11188 1.03099 1.74401 1.17623 0.96428 0.84554 0.96817 1.21053 1.00827 0.91257 0.97441 1.20874 0.96698 0.97537 1.01277 1.17600 0.94396 0.78301 0.97819 1.91586 1.90127 1.33745 1.94152 1.18937 0.97390 0.94007 1.04650 1.20495 0.82376 0.82739 0.77025 1.90946 1.67713 1.20583 1.60196 1.84601 1.43911 1.41120 1.61906 1.21466 0.95304 0.94751 0.94366 1.23747 0.96186 0.92729 1.00103 1.77174 0.98634 1.12185 1.23124 1.49434 1.02453 1.08427 1.48439 1.19907 0.96517 0.70699 0.99598 1.21263 1.47596 0.98187 0.90898 0.91584 1.24928 0.94375 0.95980 0.98358 1.69917 1.44369 1.07192 1.31103 0.86265 0.78027 0.78875 0.83336 1.19515 1.20526 1.20505 0.89606 0.90644 0.88709 0.75027 0.83729 0.83294 0.72519 0.81956 0.80571 0.92385 0.92422 0.92086 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.58 9.57 36.01 0.34 -1.23 16 2 C 0.17 3.22 7.01 -81.59 -0.57 2.65 16 3 C -0.34 -5.42 6.13 -105.07 -0.64 -6.07 16 4 C 0.61 8.58 7.55 -12.52 -0.09 8.49 16 5 O -0.53 -8.73 12.53 5.27 0.07 -8.67 16 6 N -0.68 -6.84 5.33 -10.86 -0.06 -6.89 16 7 C 0.14 1.41 6.27 -83.73 -0.53 0.88 16 8 C -0.09 -0.62 9.95 -39.32 -0.39 -1.01 16 9 C -0.14 -1.12 10.00 -39.59 -0.40 -1.52 16 10 C 0.14 1.50 7.28 -38.94 -0.28 1.21 16 11 F -0.12 -1.46 15.54 2.25 0.03 -1.42 16 12 C -0.15 -1.71 5.88 -104.95 -0.62 -2.32 16 13 C 0.53 6.40 8.27 34.54 0.29 6.69 16 14 O -0.51 -7.31 16.12 -19.25 -0.31 -7.62 16 15 O -0.50 -4.80 12.68 -40.57 -0.51 -5.31 16 16 C -0.04 -0.44 8.22 -38.96 -0.32 -0.76 16 17 C 0.06 0.91 11.51 -16.98 -0.20 0.72 16 18 N -0.29 -5.78 12.50 30.86 0.39 -5.39 16 19 N -0.31 -6.56 3.56 -57.78 -0.21 -6.76 16 20 C 0.25 5.91 5.97 -5.20 -0.03 5.88 16 21 C -0.54 -14.01 9.39 -34.44 -0.32 -14.33 16 22 H 0.07 1.76 7.81 -52.49 -0.41 1.35 16 23 C 0.07 1.76 5.46 -17.82 -0.10 1.66 16 24 N -0.89 -23.87 13.29 55.43 0.74 -23.13 16 25 Si 0.91 20.21 29.54 -169.99 -5.02 15.19 16 26 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 27 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 28 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 29 H 0.09 1.41 8.14 -51.93 -0.42 0.99 16 30 H 0.07 1.22 7.05 -51.93 -0.37 0.86 16 31 H 0.09 1.46 6.50 -51.93 -0.34 1.12 16 32 H 0.41 2.87 7.79 -40.82 -0.32 2.55 16 33 H 0.14 0.62 8.06 -52.48 -0.42 0.20 16 34 H 0.15 0.76 8.06 -52.49 -0.42 0.34 16 35 H 0.42 1.95 9.11 45.56 0.42 2.37 16 36 H 0.16 2.10 5.97 -52.49 -0.31 1.79 16 37 H 0.18 1.75 7.51 -52.49 -0.39 1.36 16 38 H 0.06 1.47 8.14 -51.93 -0.42 1.04 16 39 H 0.06 1.35 7.02 -51.93 -0.36 0.99 16 40 H 0.27 6.82 8.31 -40.82 -0.34 6.48 16 LS Contribution 360.31 15.07 5.43 5.43 Total: -1.00 -33.10 360.31 -6.23 -39.33 By element: Atomic # 1 Polarization: 7.23 SS G_CDS: -2.91 Total: 4.32 kcal Atomic # 6 Polarization: 4.79 SS G_CDS: -3.86 Total: 0.93 kcal Atomic # 7 Polarization: -43.04 SS G_CDS: 0.86 Total: -42.18 kcal Atomic # 8 Polarization: -20.84 SS G_CDS: -0.76 Total: -21.60 kcal Atomic # 9 Polarization: -1.46 SS G_CDS: 0.03 Total: -1.42 kcal Atomic # 14 Polarization: 20.21 SS G_CDS: -5.02 Total: 15.19 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -33.10 -6.23 -39.33 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001599983662.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.064 kcal (2) G-P(sol) polarization free energy of solvation -33.102 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.166 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.230 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.332 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.396 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds