Wall clock time and date at job start Wed Apr 1 2020 05:10:52
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50702 * 1
3 3 C 1.38053 * 126.29117 * 2 1
4 4 C 1.47413 * 126.41820 * 0.04062 * 3 2 1
5 5 O 1.21612 * 119.99671 * 359.97438 * 4 3 2
6 6 N 1.34777 * 119.99744 * 179.97438 * 4 3 2
7 7 C 1.40007 * 119.99881 * 185.27488 * 6 4 3
8 8 C 1.39060 * 119.96271 * 213.29794 * 7 6 4
9 9 C 1.38117 * 120.28043 * 179.72310 * 8 7 6
10 10 C 1.38329 * 120.20348 * 0.27582 * 9 8 7
11 11 F 1.35093 * 120.03809 * 179.97438 * 10 9 8
12 12 C 1.39870 * 119.91674 * 359.97438 * 10 9 8
13 13 C 1.47579 * 120.13752 * 180.02562 * 12 10 9
14 14 O 1.21483 * 119.99771 * 0.02562 * 13 12 10
15 15 O 1.34729 * 119.99711 * 180.02562 * 13 12 10
16 16 C 1.38482 * 119.96127 * 33.56845 * 7 6 4
17 17 C 1.41299 * 107.16705 * 180.29652 * 3 2 1
18 18 N 1.30446 * 108.02293 * 359.56294 * 17 3 2
19 19 N 1.34269 * 126.29218 * 180.02562 * 2 1 3
20 20 C 1.46494 * 125.75180 * 359.96260 * 19 2 1
21 21 C 1.50700 * 109.46978 * 90.00059 * 20 19 2
22 22 H 1.07997 * 120.00614 * 0.02562 * 21 20 19
23 23 C 1.37881 * 120.00077 * 179.97438 * 21 20 19
24 24 N 1.31518 * 119.99935 * 0.02562 * 23 21 20
25 25 Si 1.86802 * 120.00060 * 180.02562 * 23 21 20
26 26 H 1.48501 * 109.47289 * 359.97438 * 25 23 21
27 27 H 1.48500 * 109.47154 * 120.00542 * 25 23 21
28 28 H 1.48509 * 109.46929 * 240.00400 * 25 23 21
29 29 H 1.08997 * 109.46924 * 89.97000 * 1 2 3
30 30 H 1.09002 * 109.47081 * 209.97355 * 1 2 3
31 31 H 1.09004 * 109.46888 * 329.97478 * 1 2 3
32 32 H 0.96998 * 120.00233 * 5.27600 * 6 4 3
33 33 H 1.08003 * 119.86029 * 359.97438 * 8 7 6
34 34 H 1.08000 * 119.89674 * 180.24831 * 9 8 7
35 35 H 0.96703 * 116.99401 * 179.97438 * 15 13 12
36 36 H 1.07996 * 120.10149 * 359.97438 * 16 7 6
37 37 H 1.07998 * 125.99169 * 179.70466 * 17 3 2
38 38 H 1.09001 * 109.47436 * 209.99362 * 20 19 2
39 39 H 1.08994 * 109.47552 * 330.00050 * 20 19 2
40 40 H 0.96996 * 119.99696 * 179.97438 * 24 23 21
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 6 2.3241 1.1127 0.0000
4 6 1.8860 2.5202 0.0008
5 8 0.6997 2.7877 0.0012
6 7 2.8002 3.5106 0.0013
7 6 2.3879 4.8438 0.1135
8 6 3.0985 5.8475 -0.5356
9 6 2.6942 7.1643 -0.4340
10 6 1.5822 7.4947 0.3194
11 9 1.1900 8.7838 0.4169
12 6 0.8643 6.4924 0.9801
13 6 -0.3232 6.8394 1.7848
14 8 -0.6793 7.9974 1.8739
15 8 -1.0123 5.8717 2.4204
16 6 1.2762 5.1621 0.8755
17 6 3.6591 0.6498 -0.0070
18 7 3.6341 -0.6544 -0.0014
19 7 2.3018 -1.0822 -0.0005
20 6 1.8501 -2.4758 -0.0003
21 6 1.6946 -2.9536 -1.4211
22 1 1.9109 -2.2861 -2.2421
23 6 1.2770 -4.2433 -1.6730
24 7 1.0141 -5.0564 -0.6733
25 14 1.0849 -4.8357 -3.4341
26 1 1.4397 -3.7367 -4.3676
27 1 1.9842 -5.9941 -3.6676
28 1 -0.3230 -5.2471 -3.6671
29 1 -0.3633 0.0005 -1.0276
30 1 -0.3633 -0.8902 0.5134
31 1 -0.3633 0.8898 0.5142
32 1 3.7438 3.2996 -0.0762
33 1 3.9678 5.5959 -1.1250
34 1 3.2484 7.9384 -0.9440
35 1 -1.7827 6.1477 2.9356
36 1 0.7264 4.3834 1.3830
37 1 4.5450 1.2675 -0.0133
38 1 2.5851 -3.0959 0.5130
39 1 0.8918 -2.5472 0.5140
40 1 0.7200 -5.9635 -0.8505
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001599983662.mol2 40
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 05:10:52
Heat of formation + Delta-G solvation = -72.395695 kcal
Electronic energy + Delta-G solvation = -28987.532460 eV
Core-core repulsion = 24490.419873 eV
Total energy + Delta-G solvation = -4497.112587 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 347.111 amu
Computer time = 0.63 seconds
Orbital eigenvalues (eV)
-49.13296 -41.15412 -40.58747 -39.85576 -38.12379 -36.29028 -34.80259 -33.96118
-32.21640 -31.94444 -31.37552 -29.68048 -27.36518 -26.74577 -25.22013 -23.94006
-23.29627 -22.36764 -21.34939 -20.05242 -19.37545 -18.51941 -18.05561 -17.55522
-17.33536 -16.86349 -16.35849 -16.18952 -16.10067 -15.40201 -15.30446 -15.09371
-14.63338 -14.47228 -14.34990 -14.04553 -13.73913 -13.47580 -13.34880 -13.05414
-12.81184 -12.66422 -12.52273 -12.21531 -11.95058 -11.89198 -11.78899 -11.58736
-11.17858 -10.97052 -10.88868 -10.48286 -10.42427 -10.33769 -10.00263 -9.74986
-9.52534 -8.78112 -8.73413 -8.41625 -8.05425 -6.40613 -4.48784 0.19077
0.77598 1.91522 2.22552 2.62469 2.65377 2.83776 3.12393 3.20647
3.22133 3.24308 3.33543 3.70014 3.83120 4.18423 4.24080 4.52114
4.68576 4.89236 4.93678 4.97202 5.01592 5.10114 5.31800 5.44874
5.59541 5.62461 5.67348 5.75849 5.89244 6.00277 6.05636 6.20746
6.32882 6.41335 6.56533 6.66276 6.81517 7.01097 7.30979 7.46839
7.62394 7.65624 7.69175 8.18030 8.26425 8.56580 9.18686 10.67686
Molecular weight = 347.11amu
Principal moments of inertia in cm(-1)
A = 0.020330 B = 0.002186 C = 0.002100
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1376.947592 B =12807.558824 C =13333.097519
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.095 4.095
2 C 0.173 3.827
3 C -0.337 4.337
4 C 0.605 3.395
5 O -0.532 6.532
6 N -0.676 5.676
7 C 0.141 3.859
8 C -0.085 4.085
9 C -0.145 4.145
10 C 0.140 3.860
11 F -0.118 7.118
12 C -0.147 4.147
13 C 0.530 3.470
14 O -0.505 6.505
15 O -0.504 6.504
16 C -0.038 4.038
17 C 0.060 3.940
18 N -0.292 5.292
19 N -0.311 5.311
20 C 0.250 3.750
21 C -0.541 4.541
22 H 0.066 0.934
23 C 0.068 3.932
24 N -0.888 5.888
25 Si 0.908 3.092
26 H -0.271 1.271
27 H -0.280 1.280
28 H -0.279 1.279
29 H 0.085 0.915
30 H 0.075 0.925
31 H 0.094 0.906
32 H 0.413 0.587
33 H 0.145 0.855
34 H 0.149 0.851
35 H 0.416 0.584
36 H 0.163 0.837
37 H 0.177 0.823
38 H 0.058 0.942
39 H 0.058 0.942
40 H 0.269 0.731
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 2.908 20.573 3.654 21.096
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.154 4.154
2 C 0.035 3.965
3 C -0.353 4.353
4 C 0.398 3.602
5 O -0.409 6.409
6 N -0.321 5.321
7 C 0.046 3.954
8 C -0.106 4.106
9 C -0.164 4.164
10 C 0.119 3.881
11 F -0.096 7.096
12 C -0.150 4.150
13 C 0.374 3.626
14 O -0.394 6.394
15 O -0.315 6.315
16 C -0.059 4.059
17 C -0.128 4.128
18 N -0.111 5.111
19 N -0.088 5.088
20 C 0.133 3.867
21 C -0.579 4.579
22 H 0.084 0.916
23 C -0.136 4.136
24 N -0.526 5.526
25 Si 0.735 3.265
26 H -0.195 1.195
27 H -0.205 1.205
28 H -0.205 1.205
29 H 0.104 0.896
30 H 0.094 0.906
31 H 0.113 0.887
32 H 0.250 0.750
33 H 0.163 0.837
34 H 0.167 0.833
35 H 0.275 0.725
36 H 0.180 0.820
37 H 0.194 0.806
38 H 0.076 0.924
39 H 0.076 0.924
40 H 0.079 0.921
Dipole moment (debyes) X Y Z Total
from point charges 2.918 19.427 3.529 19.959
hybrid contribution -0.504 0.495 -0.700 0.994
sum 2.414 19.922 2.829 20.266
Atomic orbital electron populations
1.20614 0.86599 1.04003 1.04137 1.21503 0.95044 0.86442 0.93467
1.19467 0.93369 0.91710 1.30740 1.17461 0.84837 0.83956 0.73969
1.90741 1.16411 1.83972 1.49787 1.43383 1.11188 1.03099 1.74401
1.17623 0.96428 0.84554 0.96817 1.21053 1.00827 0.91257 0.97441
1.20874 0.96698 0.97537 1.01277 1.17600 0.94396 0.78301 0.97819
1.91586 1.90127 1.33745 1.94152 1.18937 0.97390 0.94007 1.04650
1.20495 0.82376 0.82739 0.77025 1.90946 1.67713 1.20583 1.60196
1.84601 1.43911 1.41120 1.61906 1.21466 0.95304 0.94751 0.94366
1.23747 0.96186 0.92729 1.00103 1.77174 0.98634 1.12185 1.23124
1.49434 1.02453 1.08427 1.48439 1.19907 0.96517 0.70699 0.99598
1.21263 1.47596 0.98187 0.90898 0.91584 1.24928 0.94375 0.95980
0.98358 1.69917 1.44369 1.07192 1.31103 0.86265 0.78027 0.78875
0.83336 1.19515 1.20526 1.20505 0.89606 0.90644 0.88709 0.75027
0.83729 0.83294 0.72519 0.81956 0.80571 0.92385 0.92422 0.92086
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.10 -1.58 9.57 36.01 0.34 -1.23 16
2 C 0.17 3.22 7.01 -81.59 -0.57 2.65 16
3 C -0.34 -5.42 6.13 -105.07 -0.64 -6.07 16
4 C 0.61 8.58 7.55 -12.52 -0.09 8.49 16
5 O -0.53 -8.73 12.53 5.27 0.07 -8.67 16
6 N -0.68 -6.84 5.33 -10.86 -0.06 -6.89 16
7 C 0.14 1.41 6.27 -83.73 -0.53 0.88 16
8 C -0.09 -0.62 9.95 -39.32 -0.39 -1.01 16
9 C -0.14 -1.12 10.00 -39.59 -0.40 -1.52 16
10 C 0.14 1.50 7.28 -38.94 -0.28 1.21 16
11 F -0.12 -1.46 15.54 2.25 0.03 -1.42 16
12 C -0.15 -1.71 5.88 -104.95 -0.62 -2.32 16
13 C 0.53 6.40 8.27 34.54 0.29 6.69 16
14 O -0.51 -7.31 16.12 -19.25 -0.31 -7.62 16
15 O -0.50 -4.80 12.68 -40.57 -0.51 -5.31 16
16 C -0.04 -0.44 8.22 -38.96 -0.32 -0.76 16
17 C 0.06 0.91 11.51 -16.98 -0.20 0.72 16
18 N -0.29 -5.78 12.50 30.86 0.39 -5.39 16
19 N -0.31 -6.56 3.56 -57.78 -0.21 -6.76 16
20 C 0.25 5.91 5.97 -5.20 -0.03 5.88 16
21 C -0.54 -14.01 9.39 -34.44 -0.32 -14.33 16
22 H 0.07 1.76 7.81 -52.49 -0.41 1.35 16
23 C 0.07 1.76 5.46 -17.82 -0.10 1.66 16
24 N -0.89 -23.87 13.29 55.43 0.74 -23.13 16
25 Si 0.91 20.21 29.54 -169.99 -5.02 15.19 16
26 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16
27 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16
28 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16
29 H 0.09 1.41 8.14 -51.93 -0.42 0.99 16
30 H 0.07 1.22 7.05 -51.93 -0.37 0.86 16
31 H 0.09 1.46 6.50 -51.93 -0.34 1.12 16
32 H 0.41 2.87 7.79 -40.82 -0.32 2.55 16
33 H 0.14 0.62 8.06 -52.48 -0.42 0.20 16
34 H 0.15 0.76 8.06 -52.49 -0.42 0.34 16
35 H 0.42 1.95 9.11 45.56 0.42 2.37 16
36 H 0.16 2.10 5.97 -52.49 -0.31 1.79 16
37 H 0.18 1.75 7.51 -52.49 -0.39 1.36 16
38 H 0.06 1.47 8.14 -51.93 -0.42 1.04 16
39 H 0.06 1.35 7.02 -51.93 -0.36 0.99 16
40 H 0.27 6.82 8.31 -40.82 -0.34 6.48 16
LS Contribution 360.31 15.07 5.43 5.43
Total: -1.00 -33.10 360.31 -6.23 -39.33
By element:
Atomic # 1 Polarization: 7.23 SS G_CDS: -2.91 Total: 4.32 kcal
Atomic # 6 Polarization: 4.79 SS G_CDS: -3.86 Total: 0.93 kcal
Atomic # 7 Polarization: -43.04 SS G_CDS: 0.86 Total: -42.18 kcal
Atomic # 8 Polarization: -20.84 SS G_CDS: -0.76 Total: -21.60 kcal
Atomic # 9 Polarization: -1.46 SS G_CDS: 0.03 Total: -1.42 kcal
Atomic # 14 Polarization: 20.21 SS G_CDS: -5.02 Total: 15.19 kcal
Total LS contribution 5.43 Total: 5.43 kcal
Total: -33.10 -6.23 -39.33 kcal
The number of atoms in the molecule is 40
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001599983662.mol2 40
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -33.064 kcal
(2) G-P(sol) polarization free energy of solvation -33.102 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.166 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.230 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.332 kcal
(6) G-S(sol) free energy of system = (1) + (5) -72.396 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.64 seconds