Wall clock time and date at job start Wed Apr 1 2020 05:10:51
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50702 * 1
3 3 C 1.38053 * 126.29117 * 2 1
4 4 C 1.47413 * 126.41820 * 0.04062 * 3 2 1
5 5 O 1.21612 * 119.99671 * 359.97438 * 4 3 2
6 6 N 1.34777 * 119.99744 * 179.97438 * 4 3 2
7 7 C 1.40007 * 119.99881 * 185.27488 * 6 4 3
8 8 C 1.39060 * 119.96271 * 213.29794 * 7 6 4
9 9 C 1.38117 * 120.28043 * 179.72310 * 8 7 6
10 10 C 1.38329 * 120.20348 * 0.27582 * 9 8 7
11 11 F 1.35093 * 120.03809 * 179.97438 * 10 9 8
12 12 C 1.39870 * 119.91674 * 359.97438 * 10 9 8
13 13 C 1.47579 * 120.13752 * 180.02562 * 12 10 9
14 14 O 1.21483 * 119.99771 * 0.02562 * 13 12 10
15 15 O 1.34729 * 119.99711 * 180.02562 * 13 12 10
16 16 C 1.38482 * 119.96127 * 33.56845 * 7 6 4
17 17 C 1.41299 * 107.16705 * 180.29652 * 3 2 1
18 18 N 1.30446 * 108.02293 * 359.56294 * 17 3 2
19 19 N 1.34269 * 126.29218 * 180.02562 * 2 1 3
20 20 C 1.46494 * 125.75180 * 359.96260 * 19 2 1
21 21 C 1.50700 * 109.46978 * 90.00059 * 20 19 2
22 22 H 1.07997 * 120.00614 * 0.02562 * 21 20 19
23 23 C 1.37881 * 120.00077 * 179.97438 * 21 20 19
24 24 N 1.31518 * 119.99935 * 0.02562 * 23 21 20
25 25 Si 1.86802 * 120.00060 * 180.02562 * 23 21 20
26 26 H 1.48501 * 109.47289 * 359.97438 * 25 23 21
27 27 H 1.48500 * 109.47154 * 120.00542 * 25 23 21
28 28 H 1.48509 * 109.46929 * 240.00400 * 25 23 21
29 29 H 1.08997 * 109.46924 * 89.97000 * 1 2 3
30 30 H 1.09002 * 109.47081 * 209.97355 * 1 2 3
31 31 H 1.09004 * 109.46888 * 329.97478 * 1 2 3
32 32 H 0.96998 * 120.00233 * 5.27600 * 6 4 3
33 33 H 1.08003 * 119.86029 * 359.97438 * 8 7 6
34 34 H 1.08000 * 119.89674 * 180.24831 * 9 8 7
35 35 H 0.96703 * 116.99401 * 179.97438 * 15 13 12
36 36 H 1.07996 * 120.10149 * 359.97438 * 16 7 6
37 37 H 1.07998 * 125.99169 * 179.70466 * 17 3 2
38 38 H 1.09001 * 109.47436 * 209.99362 * 20 19 2
39 39 H 1.08994 * 109.47552 * 330.00050 * 20 19 2
40 40 H 0.96996 * 119.99696 * 179.97438 * 24 23 21
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 6 2.3241 1.1127 0.0000
4 6 1.8860 2.5202 0.0008
5 8 0.6997 2.7877 0.0012
6 7 2.8002 3.5106 0.0013
7 6 2.3879 4.8438 0.1135
8 6 3.0985 5.8475 -0.5356
9 6 2.6942 7.1643 -0.4340
10 6 1.5822 7.4947 0.3194
11 9 1.1900 8.7838 0.4169
12 6 0.8643 6.4924 0.9801
13 6 -0.3232 6.8394 1.7848
14 8 -0.6793 7.9974 1.8739
15 8 -1.0123 5.8717 2.4204
16 6 1.2762 5.1621 0.8755
17 6 3.6591 0.6498 -0.0070
18 7 3.6341 -0.6544 -0.0014
19 7 2.3018 -1.0822 -0.0005
20 6 1.8501 -2.4758 -0.0003
21 6 1.6946 -2.9536 -1.4211
22 1 1.9109 -2.2861 -2.2421
23 6 1.2770 -4.2433 -1.6730
24 7 1.0141 -5.0564 -0.6733
25 14 1.0849 -4.8357 -3.4341
26 1 1.4397 -3.7367 -4.3676
27 1 1.9842 -5.9941 -3.6676
28 1 -0.3230 -5.2471 -3.6671
29 1 -0.3633 0.0005 -1.0276
30 1 -0.3633 -0.8902 0.5134
31 1 -0.3633 0.8898 0.5142
32 1 3.7438 3.2996 -0.0762
33 1 3.9678 5.5959 -1.1250
34 1 3.2484 7.9384 -0.9440
35 1 -1.7827 6.1477 2.9356
36 1 0.7264 4.3834 1.3830
37 1 4.5450 1.2675 -0.0133
38 1 2.5851 -3.0959 0.5130
39 1 0.8918 -2.5472 0.5140
40 1 0.7200 -5.9635 -0.8505
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001599983662.mol2 40
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 05:10:51
Heat of formation + Delta-G solvation = -95.076088 kcal
Electronic energy + Delta-G solvation = -28988.515955 eV
Core-core repulsion = 24490.419873 eV
Total energy + Delta-G solvation = -4498.096083 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 347.111 amu
Computer time = 0.73 seconds
Orbital eigenvalues (eV)
-49.98776 -42.41343 -41.54626 -40.84626 -39.06679 -37.17651 -35.90273 -35.64049
-33.82160 -32.81376 -32.67007 -30.69159 -28.96918 -28.10924 -26.02410 -25.48880
-24.46184 -23.38784 -22.33005 -21.20762 -20.67600 -19.47002 -18.90767 -18.86379
-18.51701 -18.34317 -17.28644 -17.11528 -16.95630 -16.75543 -16.45057 -16.27839
-16.08557 -15.59807 -15.57072 -15.07898 -14.82832 -14.44918 -14.34108 -14.20738
-14.06760 -13.86218 -13.68196 -13.59585 -13.50461 -13.07801 -12.96143 -12.72260
-12.70898 -12.67187 -12.32193 -11.83231 -11.81265 -11.72889 -11.34549 -10.87517
-10.76028 -10.30518 -10.26690 -9.59587 -9.10343 -8.37831 -6.53798 -0.58847
-0.00218 0.66580 1.27687 1.36850 1.38110 1.41567 1.50038 1.61603
1.91411 2.12356 2.32922 2.34493 2.64540 2.94884 3.07015 3.52320
3.71275 3.74221 3.86962 3.99557 4.08312 4.21585 4.23982 4.36206
4.52444 4.63451 4.73537 4.80286 4.88870 4.91765 4.98630 5.07762
5.12247 5.18876 5.29281 5.45230 5.49897 5.67423 5.75208 5.76436
6.03024 6.44875 6.55564 6.84913 6.85679 7.17425 7.19325 8.70237
Molecular weight = 347.11amu
Principal moments of inertia in cm(-1)
A = 0.020330 B = 0.002186 C = 0.002100
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1376.947592 B =12807.558824 C =13333.097519
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.089 4.089
2 C 0.151 3.849
3 C -0.331 4.331
4 C 0.609 3.391
5 O -0.557 6.557
6 N -0.654 5.654
7 C 0.129 3.871
8 C -0.058 4.058
9 C -0.130 4.130
10 C 0.125 3.875
11 F -0.132 7.132
12 C -0.167 4.167
13 C 0.529 3.471
14 O -0.538 6.538
15 O -0.503 6.503
16 C -0.049 4.049
17 C 0.084 3.916
18 N -0.336 5.336
19 N -0.338 5.338
20 C 0.266 3.734
21 C -0.553 4.553
22 H 0.053 0.947
23 C 0.023 3.977
24 N -0.917 5.917
25 Si 0.971 3.029
26 H -0.271 1.271
27 H -0.274 1.274
28 H -0.270 1.270
29 H 0.083 0.917
30 H 0.070 0.930
31 H 0.104 0.896
32 H 0.431 0.569
33 H 0.189 0.811
34 H 0.184 0.816
35 H 0.434 0.566
36 H 0.143 0.857
37 H 0.234 0.766
38 H 0.032 0.968
39 H 0.051 0.949
40 H 0.274 0.726
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 4.872 22.302 2.108 22.925
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.147 4.147
2 C 0.015 3.985
3 C -0.346 4.346
4 C 0.400 3.600
5 O -0.436 6.436
6 N -0.300 5.300
7 C 0.034 3.966
8 C -0.078 4.078
9 C -0.149 4.149
10 C 0.104 3.896
11 F -0.110 7.110
12 C -0.170 4.170
13 C 0.375 3.625
14 O -0.430 6.430
15 O -0.316 6.316
16 C -0.070 4.070
17 C -0.103 4.103
18 N -0.156 5.156
19 N -0.115 5.115
20 C 0.148 3.852
21 C -0.591 4.591
22 H 0.071 0.929
23 C -0.178 4.178
24 N -0.555 5.555
25 Si 0.795 3.205
26 H -0.196 1.196
27 H -0.200 1.200
28 H -0.196 1.196
29 H 0.102 0.898
30 H 0.088 0.912
31 H 0.123 0.877
32 H 0.272 0.728
33 H 0.206 0.794
34 H 0.201 0.799
35 H 0.296 0.704
36 H 0.161 0.839
37 H 0.250 0.750
38 H 0.050 0.950
39 H 0.068 0.932
40 H 0.083 0.917
Dipole moment (debyes) X Y Z Total
from point charges 4.899 21.179 2.003 21.830
hybrid contribution -1.076 0.109 -0.164 1.094
sum 3.823 21.288 1.838 21.706
Atomic orbital electron populations
1.20587 0.85953 1.04177 1.04009 1.21970 0.95894 0.86779 0.93867
1.19716 0.93435 0.92228 1.29208 1.17192 0.84932 0.83840 0.74017
1.90744 1.17727 1.84209 1.50934 1.43036 1.11467 1.02464 1.73083
1.17760 0.96629 0.84756 0.97485 1.21458 1.00786 0.89957 0.95647
1.21278 0.95225 0.98640 0.99708 1.17991 0.95448 0.77565 0.98590
1.91552 1.90474 1.34637 1.94346 1.19011 0.97787 0.94502 1.05656
1.20735 0.82549 0.82467 0.76751 1.90921 1.68755 1.21743 1.61608
1.84579 1.44674 1.40592 1.61795 1.21295 0.96217 0.94163 0.95332
1.24623 0.97618 0.91570 0.96470 1.77127 0.98188 1.14630 1.25613
1.49115 1.03496 1.07760 1.51113 1.19371 0.95332 0.72414 0.98125
1.21417 1.47709 0.98397 0.91586 0.92873 1.25720 0.93908 0.96031
1.02140 1.70000 1.44949 1.07608 1.32960 0.85312 0.78346 0.78229
0.78645 1.19556 1.19958 1.19562 0.89833 0.91163 0.87728 0.72820
0.79400 0.79884 0.70391 0.83937 0.74967 0.95007 0.93165 0.91701
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.09 -3.02 9.57 71.24 0.68 -2.34 16
2 C 0.15 5.65 7.01 42.14 0.30 5.94 16
3 C -0.33 -10.08 6.13 -20.15 -0.12 -10.21 16
4 C 0.61 15.97 7.55 86.66 0.65 16.62 16
5 O -0.56 -17.77 12.53 -4.07 -0.05 -17.82 16
6 N -0.65 -10.81 5.33 -306.51 -1.63 -12.45 16
7 C 0.13 2.14 6.27 38.09 0.24 2.38 16
8 C -0.06 -0.56 9.95 22.44 0.22 -0.34 16
9 C -0.13 -1.47 10.00 22.26 0.22 -1.25 16
10 C 0.12 2.46 7.28 22.69 0.17 2.62 16
11 F -0.13 -3.15 15.54 44.97 0.70 -2.45 16
12 C -0.17 -3.77 5.88 -20.08 -0.12 -3.89 16
13 C 0.53 13.02 8.27 70.29 0.58 13.60 16
14 O -0.54 -15.96 16.12 19.89 0.32 -15.64 16
15 O -0.50 -9.75 12.68 -56.39 -0.71 -10.46 16
16 C -0.05 -1.08 8.22 22.67 0.19 -0.89 16
17 C 0.08 2.35 11.51 85.65 0.99 3.34 16
18 N -0.34 -13.15 12.50 -56.27 -0.70 -13.85 16
19 N -0.34 -14.56 3.56 -336.70 -1.20 -15.76 16
20 C 0.27 13.16 5.97 85.63 0.51 13.67 16
21 C -0.55 -29.38 9.39 25.60 0.24 -29.14 16
22 H 0.05 2.90 7.81 -2.91 -0.02 2.88 16
23 C 0.02 1.23 5.46 84.66 0.46 1.69 16
24 N -0.92 -50.16 13.29 21.45 0.28 -49.87 16
25 Si 0.97 41.53 29.54 68.60 2.03 43.56 16
26 H -0.27 -11.51 7.11 99.48 0.71 -10.80 16
27 H -0.27 -11.44 7.11 99.48 0.71 -10.73 16
28 H -0.27 -11.12 7.11 99.48 0.71 -10.42 16
29 H 0.08 2.82 8.14 -2.39 -0.02 2.80 16
30 H 0.07 2.39 7.05 -2.39 -0.02 2.37 16
31 H 0.10 3.28 6.50 -2.39 -0.02 3.26 16
32 H 0.43 3.75 7.79 -92.71 -0.72 3.03 16
33 H 0.19 0.24 8.06 -2.91 -0.02 0.22 16
34 H 0.18 0.86 8.06 -2.91 -0.02 0.84 16
35 H 0.43 4.15 9.11 -74.06 -0.67 3.47 16
36 H 0.14 3.69 5.97 -2.91 -0.02 3.67 16
37 H 0.23 3.41 7.51 -2.91 -0.02 3.38 16
38 H 0.03 1.70 8.14 -2.39 -0.02 1.68 16
39 H 0.05 2.50 7.02 -2.39 -0.02 2.48 16
40 H 0.27 13.99 8.31 -92.71 -0.77 13.22 16
Total: -1.00 -75.58 360.31 3.99 -71.59
By element:
Atomic # 1 Polarization: 11.60 SS G_CDS: -0.24 Total: 11.36 kcal
Atomic # 6 Polarization: 6.60 SS G_CDS: 5.21 Total: 11.80 kcal
Atomic # 7 Polarization: -88.68 SS G_CDS: -3.25 Total: -91.93 kcal
Atomic # 8 Polarization: -43.48 SS G_CDS: -0.45 Total: -43.92 kcal
Atomic # 9 Polarization: -3.15 SS G_CDS: 0.70 Total: -2.45 kcal
Atomic # 14 Polarization: 41.53 SS G_CDS: 2.03 Total: 43.56 kcal
Total: -75.58 3.99 -71.59 kcal
The number of atoms in the molecule is 40
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001599983662.mol2 40
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -23.486 kcal
(2) G-P(sol) polarization free energy of solvation -75.581 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.067 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.991 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.590 kcal
(6) G-S(sol) free energy of system = (1) + (5) -95.076 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.73 seconds