Wall clock time and date at job start Wed Apr 1 2020 05:10:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38053 * 126.29117 * 2 1 4 4 C 1.47413 * 126.41820 * 0.04062 * 3 2 1 5 5 O 1.21612 * 119.99671 * 359.97438 * 4 3 2 6 6 N 1.34777 * 119.99744 * 179.97438 * 4 3 2 7 7 C 1.40007 * 119.99881 * 185.27488 * 6 4 3 8 8 C 1.39060 * 119.96271 * 213.29794 * 7 6 4 9 9 C 1.38117 * 120.28043 * 179.72310 * 8 7 6 10 10 C 1.38329 * 120.20348 * 0.27582 * 9 8 7 11 11 F 1.35093 * 120.03809 * 179.97438 * 10 9 8 12 12 C 1.39870 * 119.91674 * 359.97438 * 10 9 8 13 13 C 1.47579 * 120.13752 * 180.02562 * 12 10 9 14 14 O 1.21483 * 119.99771 * 0.02562 * 13 12 10 15 15 O 1.34729 * 119.99711 * 180.02562 * 13 12 10 16 16 C 1.38482 * 119.96127 * 33.56845 * 7 6 4 17 17 C 1.41299 * 107.16705 * 180.29652 * 3 2 1 18 18 N 1.30446 * 108.02293 * 359.56294 * 17 3 2 19 19 N 1.34269 * 126.29218 * 180.02562 * 2 1 3 20 20 C 1.46494 * 125.75180 * 359.96260 * 19 2 1 21 21 C 1.50700 * 109.46978 * 90.00059 * 20 19 2 22 22 H 1.07997 * 120.00614 * 0.02562 * 21 20 19 23 23 C 1.37881 * 120.00077 * 179.97438 * 21 20 19 24 24 N 1.31518 * 119.99935 * 0.02562 * 23 21 20 25 25 Si 1.86802 * 120.00060 * 180.02562 * 23 21 20 26 26 H 1.48501 * 109.47289 * 359.97438 * 25 23 21 27 27 H 1.48500 * 109.47154 * 120.00542 * 25 23 21 28 28 H 1.48509 * 109.46929 * 240.00400 * 25 23 21 29 29 H 1.08997 * 109.46924 * 89.97000 * 1 2 3 30 30 H 1.09002 * 109.47081 * 209.97355 * 1 2 3 31 31 H 1.09004 * 109.46888 * 329.97478 * 1 2 3 32 32 H 0.96998 * 120.00233 * 5.27600 * 6 4 3 33 33 H 1.08003 * 119.86029 * 359.97438 * 8 7 6 34 34 H 1.08000 * 119.89674 * 180.24831 * 9 8 7 35 35 H 0.96703 * 116.99401 * 179.97438 * 15 13 12 36 36 H 1.07996 * 120.10149 * 359.97438 * 16 7 6 37 37 H 1.07998 * 125.99169 * 179.70466 * 17 3 2 38 38 H 1.09001 * 109.47436 * 209.99362 * 20 19 2 39 39 H 1.08994 * 109.47552 * 330.00050 * 20 19 2 40 40 H 0.96996 * 119.99696 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3241 1.1127 0.0000 4 6 1.8860 2.5202 0.0008 5 8 0.6997 2.7877 0.0012 6 7 2.8002 3.5106 0.0013 7 6 2.3879 4.8438 0.1135 8 6 3.0985 5.8475 -0.5356 9 6 2.6942 7.1643 -0.4340 10 6 1.5822 7.4947 0.3194 11 9 1.1900 8.7838 0.4169 12 6 0.8643 6.4924 0.9801 13 6 -0.3232 6.8394 1.7848 14 8 -0.6793 7.9974 1.8739 15 8 -1.0123 5.8717 2.4204 16 6 1.2762 5.1621 0.8755 17 6 3.6591 0.6498 -0.0070 18 7 3.6341 -0.6544 -0.0014 19 7 2.3018 -1.0822 -0.0005 20 6 1.8501 -2.4758 -0.0003 21 6 1.6946 -2.9536 -1.4211 22 1 1.9109 -2.2861 -2.2421 23 6 1.2770 -4.2433 -1.6730 24 7 1.0141 -5.0564 -0.6733 25 14 1.0849 -4.8357 -3.4341 26 1 1.4397 -3.7367 -4.3676 27 1 1.9842 -5.9941 -3.6676 28 1 -0.3230 -5.2471 -3.6671 29 1 -0.3633 0.0005 -1.0276 30 1 -0.3633 -0.8902 0.5134 31 1 -0.3633 0.8898 0.5142 32 1 3.7438 3.2996 -0.0762 33 1 3.9678 5.5959 -1.1250 34 1 3.2484 7.9384 -0.9440 35 1 -1.7827 6.1477 2.9356 36 1 0.7264 4.3834 1.3830 37 1 4.5450 1.2675 -0.0133 38 1 2.5851 -3.0959 0.5130 39 1 0.8918 -2.5472 0.5140 40 1 0.7200 -5.9635 -0.8505 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001599983662.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:10:51 Heat of formation + Delta-G solvation = -95.076088 kcal Electronic energy + Delta-G solvation = -28988.515955 eV Core-core repulsion = 24490.419873 eV Total energy + Delta-G solvation = -4498.096083 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 347.111 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -49.98776 -42.41343 -41.54626 -40.84626 -39.06679 -37.17651 -35.90273 -35.64049 -33.82160 -32.81376 -32.67007 -30.69159 -28.96918 -28.10924 -26.02410 -25.48880 -24.46184 -23.38784 -22.33005 -21.20762 -20.67600 -19.47002 -18.90767 -18.86379 -18.51701 -18.34317 -17.28644 -17.11528 -16.95630 -16.75543 -16.45057 -16.27839 -16.08557 -15.59807 -15.57072 -15.07898 -14.82832 -14.44918 -14.34108 -14.20738 -14.06760 -13.86218 -13.68196 -13.59585 -13.50461 -13.07801 -12.96143 -12.72260 -12.70898 -12.67187 -12.32193 -11.83231 -11.81265 -11.72889 -11.34549 -10.87517 -10.76028 -10.30518 -10.26690 -9.59587 -9.10343 -8.37831 -6.53798 -0.58847 -0.00218 0.66580 1.27687 1.36850 1.38110 1.41567 1.50038 1.61603 1.91411 2.12356 2.32922 2.34493 2.64540 2.94884 3.07015 3.52320 3.71275 3.74221 3.86962 3.99557 4.08312 4.21585 4.23982 4.36206 4.52444 4.63451 4.73537 4.80286 4.88870 4.91765 4.98630 5.07762 5.12247 5.18876 5.29281 5.45230 5.49897 5.67423 5.75208 5.76436 6.03024 6.44875 6.55564 6.84913 6.85679 7.17425 7.19325 8.70237 Molecular weight = 347.11amu Principal moments of inertia in cm(-1) A = 0.020330 B = 0.002186 C = 0.002100 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1376.947592 B =12807.558824 C =13333.097519 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C 0.151 3.849 3 C -0.331 4.331 4 C 0.609 3.391 5 O -0.557 6.557 6 N -0.654 5.654 7 C 0.129 3.871 8 C -0.058 4.058 9 C -0.130 4.130 10 C 0.125 3.875 11 F -0.132 7.132 12 C -0.167 4.167 13 C 0.529 3.471 14 O -0.538 6.538 15 O -0.503 6.503 16 C -0.049 4.049 17 C 0.084 3.916 18 N -0.336 5.336 19 N -0.338 5.338 20 C 0.266 3.734 21 C -0.553 4.553 22 H 0.053 0.947 23 C 0.023 3.977 24 N -0.917 5.917 25 Si 0.971 3.029 26 H -0.271 1.271 27 H -0.274 1.274 28 H -0.270 1.270 29 H 0.083 0.917 30 H 0.070 0.930 31 H 0.104 0.896 32 H 0.431 0.569 33 H 0.189 0.811 34 H 0.184 0.816 35 H 0.434 0.566 36 H 0.143 0.857 37 H 0.234 0.766 38 H 0.032 0.968 39 H 0.051 0.949 40 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.872 22.302 2.108 22.925 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.015 3.985 3 C -0.346 4.346 4 C 0.400 3.600 5 O -0.436 6.436 6 N -0.300 5.300 7 C 0.034 3.966 8 C -0.078 4.078 9 C -0.149 4.149 10 C 0.104 3.896 11 F -0.110 7.110 12 C -0.170 4.170 13 C 0.375 3.625 14 O -0.430 6.430 15 O -0.316 6.316 16 C -0.070 4.070 17 C -0.103 4.103 18 N -0.156 5.156 19 N -0.115 5.115 20 C 0.148 3.852 21 C -0.591 4.591 22 H 0.071 0.929 23 C -0.178 4.178 24 N -0.555 5.555 25 Si 0.795 3.205 26 H -0.196 1.196 27 H -0.200 1.200 28 H -0.196 1.196 29 H 0.102 0.898 30 H 0.088 0.912 31 H 0.123 0.877 32 H 0.272 0.728 33 H 0.206 0.794 34 H 0.201 0.799 35 H 0.296 0.704 36 H 0.161 0.839 37 H 0.250 0.750 38 H 0.050 0.950 39 H 0.068 0.932 40 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 4.899 21.179 2.003 21.830 hybrid contribution -1.076 0.109 -0.164 1.094 sum 3.823 21.288 1.838 21.706 Atomic orbital electron populations 1.20587 0.85953 1.04177 1.04009 1.21970 0.95894 0.86779 0.93867 1.19716 0.93435 0.92228 1.29208 1.17192 0.84932 0.83840 0.74017 1.90744 1.17727 1.84209 1.50934 1.43036 1.11467 1.02464 1.73083 1.17760 0.96629 0.84756 0.97485 1.21458 1.00786 0.89957 0.95647 1.21278 0.95225 0.98640 0.99708 1.17991 0.95448 0.77565 0.98590 1.91552 1.90474 1.34637 1.94346 1.19011 0.97787 0.94502 1.05656 1.20735 0.82549 0.82467 0.76751 1.90921 1.68755 1.21743 1.61608 1.84579 1.44674 1.40592 1.61795 1.21295 0.96217 0.94163 0.95332 1.24623 0.97618 0.91570 0.96470 1.77127 0.98188 1.14630 1.25613 1.49115 1.03496 1.07760 1.51113 1.19371 0.95332 0.72414 0.98125 1.21417 1.47709 0.98397 0.91586 0.92873 1.25720 0.93908 0.96031 1.02140 1.70000 1.44949 1.07608 1.32960 0.85312 0.78346 0.78229 0.78645 1.19556 1.19958 1.19562 0.89833 0.91163 0.87728 0.72820 0.79400 0.79884 0.70391 0.83937 0.74967 0.95007 0.93165 0.91701 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -3.02 9.57 71.24 0.68 -2.34 16 2 C 0.15 5.65 7.01 42.14 0.30 5.94 16 3 C -0.33 -10.08 6.13 -20.15 -0.12 -10.21 16 4 C 0.61 15.97 7.55 86.66 0.65 16.62 16 5 O -0.56 -17.77 12.53 -4.07 -0.05 -17.82 16 6 N -0.65 -10.81 5.33 -306.51 -1.63 -12.45 16 7 C 0.13 2.14 6.27 38.09 0.24 2.38 16 8 C -0.06 -0.56 9.95 22.44 0.22 -0.34 16 9 C -0.13 -1.47 10.00 22.26 0.22 -1.25 16 10 C 0.12 2.46 7.28 22.69 0.17 2.62 16 11 F -0.13 -3.15 15.54 44.97 0.70 -2.45 16 12 C -0.17 -3.77 5.88 -20.08 -0.12 -3.89 16 13 C 0.53 13.02 8.27 70.29 0.58 13.60 16 14 O -0.54 -15.96 16.12 19.89 0.32 -15.64 16 15 O -0.50 -9.75 12.68 -56.39 -0.71 -10.46 16 16 C -0.05 -1.08 8.22 22.67 0.19 -0.89 16 17 C 0.08 2.35 11.51 85.65 0.99 3.34 16 18 N -0.34 -13.15 12.50 -56.27 -0.70 -13.85 16 19 N -0.34 -14.56 3.56 -336.70 -1.20 -15.76 16 20 C 0.27 13.16 5.97 85.63 0.51 13.67 16 21 C -0.55 -29.38 9.39 25.60 0.24 -29.14 16 22 H 0.05 2.90 7.81 -2.91 -0.02 2.88 16 23 C 0.02 1.23 5.46 84.66 0.46 1.69 16 24 N -0.92 -50.16 13.29 21.45 0.28 -49.87 16 25 Si 0.97 41.53 29.54 68.60 2.03 43.56 16 26 H -0.27 -11.51 7.11 99.48 0.71 -10.80 16 27 H -0.27 -11.44 7.11 99.48 0.71 -10.73 16 28 H -0.27 -11.12 7.11 99.48 0.71 -10.42 16 29 H 0.08 2.82 8.14 -2.39 -0.02 2.80 16 30 H 0.07 2.39 7.05 -2.39 -0.02 2.37 16 31 H 0.10 3.28 6.50 -2.39 -0.02 3.26 16 32 H 0.43 3.75 7.79 -92.71 -0.72 3.03 16 33 H 0.19 0.24 8.06 -2.91 -0.02 0.22 16 34 H 0.18 0.86 8.06 -2.91 -0.02 0.84 16 35 H 0.43 4.15 9.11 -74.06 -0.67 3.47 16 36 H 0.14 3.69 5.97 -2.91 -0.02 3.67 16 37 H 0.23 3.41 7.51 -2.91 -0.02 3.38 16 38 H 0.03 1.70 8.14 -2.39 -0.02 1.68 16 39 H 0.05 2.50 7.02 -2.39 -0.02 2.48 16 40 H 0.27 13.99 8.31 -92.71 -0.77 13.22 16 Total: -1.00 -75.58 360.31 3.99 -71.59 By element: Atomic # 1 Polarization: 11.60 SS G_CDS: -0.24 Total: 11.36 kcal Atomic # 6 Polarization: 6.60 SS G_CDS: 5.21 Total: 11.80 kcal Atomic # 7 Polarization: -88.68 SS G_CDS: -3.25 Total: -91.93 kcal Atomic # 8 Polarization: -43.48 SS G_CDS: -0.45 Total: -43.92 kcal Atomic # 9 Polarization: -3.15 SS G_CDS: 0.70 Total: -2.45 kcal Atomic # 14 Polarization: 41.53 SS G_CDS: 2.03 Total: 43.56 kcal Total: -75.58 3.99 -71.59 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001599983662.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.486 kcal (2) G-P(sol) polarization free energy of solvation -75.581 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.067 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.991 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.590 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.076 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds