Wall clock time and date at job start Wed Apr 1 2020 05:10:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38062 * 126.28740 * 2 1 4 4 C 1.47402 * 126.42301 * 359.97438 * 3 2 1 5 5 O 1.21603 * 119.99633 * 359.97438 * 4 3 2 6 6 N 1.34769 * 119.99851 * 179.97438 * 4 3 2 7 7 C 1.39450 * 119.99473 * 184.51568 * 6 4 3 8 8 C 1.39103 * 119.93196 * 325.23009 * 7 6 4 9 9 C 1.37661 * 120.10716 * 180.23550 * 8 7 6 10 10 C 1.39805 * 119.96087 * 359.51235 * 9 8 7 11 11 C 1.47460 * 120.06861 * 180.25246 * 10 9 8 12 12 O 1.21503 * 119.99652 * 180.23174 * 11 10 9 13 13 O 1.34750 * 119.99943 * 0.23530 * 11 10 9 14 14 C 1.39816 * 119.86357 * 0.48460 * 10 9 8 15 15 C 1.37836 * 119.88791 * 359.75100 * 14 10 9 16 16 F 1.35109 * 119.97972 * 180.02562 * 15 14 10 17 17 C 1.41311 * 107.16220 * 180.23799 * 3 2 1 18 18 N 1.30447 * 108.01937 * 359.59730 * 17 3 2 19 19 N 1.34257 * 126.29715 * 179.97438 * 2 1 3 20 20 C 1.46506 * 125.75116 * 359.97032 * 19 2 1 21 21 C 1.50696 * 109.47207 * 89.99976 * 20 19 2 22 22 H 1.08004 * 120.00526 * 359.97438 * 21 20 19 23 23 C 1.37877 * 120.00100 * 180.02562 * 21 20 19 24 24 N 1.31510 * 119.99927 * 0.02562 * 23 21 20 25 25 Si 1.86799 * 120.00276 * 179.97438 * 23 21 20 26 26 H 1.48504 * 109.46866 * 60.00199 * 25 23 21 27 27 H 1.48498 * 109.47275 * 179.97438 * 25 23 21 28 28 H 1.48492 * 109.47513 * 300.00574 * 25 23 21 29 29 H 1.09004 * 109.47067 * 89.97816 * 1 2 3 30 30 H 1.09001 * 109.47107 * 209.96739 * 1 2 3 31 31 H 1.08991 * 109.47336 * 329.97546 * 1 2 3 32 32 H 0.97001 * 120.00697 * 4.51982 * 6 4 3 33 33 H 1.08003 * 119.94848 * 359.95128 * 8 7 6 34 34 H 1.08001 * 120.01845 * 179.74153 * 9 8 7 35 35 H 0.96703 * 117.00304 * 180.02562 * 13 11 10 36 36 H 1.07997 * 120.05656 * 179.76914 * 14 10 9 37 37 H 1.07997 * 125.98619 * 179.76199 * 17 3 2 38 38 H 1.08997 * 109.47085 * 209.99963 * 20 19 2 39 39 H 1.09000 * 109.47074 * 329.99843 * 20 19 2 40 40 H 0.97008 * 120.00266 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3241 1.1129 0.0000 4 6 1.8861 2.5203 -0.0005 5 8 0.6998 2.7878 -0.0015 6 7 2.8002 3.5105 0.0001 7 6 2.3884 4.8395 0.0946 8 6 1.1998 5.2421 -0.5054 9 6 0.7922 6.5541 -0.4184 10 6 1.5687 7.4815 0.2827 11 6 1.1316 8.8863 0.3821 12 8 1.8096 9.6920 0.9882 13 8 -0.0198 9.2763 -0.1991 14 6 2.7632 7.0752 0.8853 15 6 3.1681 5.7611 0.7904 16 9 4.3217 5.3664 1.3724 17 6 3.6592 0.6499 -0.0056 18 7 3.6341 -0.6543 0.0000 19 7 2.3018 -1.0821 0.0005 20 6 1.8503 -2.4758 0.0017 21 6 1.6948 -2.9547 -1.4186 22 1 1.9104 -2.2876 -2.2402 23 6 1.2764 -4.2443 -1.6694 24 7 1.0125 -5.0562 -0.6691 25 14 1.0830 -4.8379 -3.4300 26 1 2.3887 -4.7416 -4.1310 27 1 0.6255 -6.2506 -3.4287 28 1 0.0821 -3.9934 -4.1300 29 1 -0.3633 0.0004 -1.0277 30 1 -0.3633 -0.8903 0.5133 31 1 -0.3633 0.8897 0.5142 32 1 3.7446 3.2990 -0.0654 33 1 0.5980 4.5253 -1.0443 34 1 -0.1288 6.8661 -0.8883 35 1 -0.2647 10.2073 -0.1072 36 1 3.3674 7.7898 1.4245 37 1 4.5451 1.2676 -0.0107 38 1 2.5851 -3.0953 0.5157 39 1 0.8918 -2.5467 0.5160 40 1 0.7184 -5.9637 -0.8455 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001599983673.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:10:58 Heat of formation + Delta-G solvation = -73.985813 kcal Electronic energy + Delta-G solvation = -28767.908423 eV Core-core repulsion = 24270.726883 eV Total energy + Delta-G solvation = -4497.181540 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 347.111 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -49.20544 -41.17326 -40.72842 -39.91962 -38.15520 -36.45608 -35.04550 -33.98479 -32.23506 -31.52303 -31.04003 -30.37315 -27.59504 -26.82290 -25.12057 -23.55095 -23.22760 -22.51504 -21.58758 -20.07706 -19.42026 -18.75349 -18.26211 -17.56388 -17.26485 -16.84643 -16.45766 -16.11767 -16.09253 -15.78142 -15.28369 -15.11906 -14.65213 -14.59064 -14.35500 -14.16739 -13.98008 -13.40043 -13.33268 -12.83934 -12.77742 -12.70690 -12.52806 -12.22597 -12.02923 -11.91027 -11.89037 -11.59554 -11.21383 -11.06078 -10.93668 -10.75572 -10.44324 -10.33378 -10.04905 -9.70822 -9.25824 -8.77384 -8.75074 -8.58996 -8.09994 -6.40337 -4.48890 0.15213 0.80861 1.83782 2.15553 2.55929 2.61416 2.74672 3.15199 3.19930 3.20585 3.24062 3.30443 3.63310 3.82679 4.18260 4.35264 4.60758 4.64126 4.72677 4.87878 4.96467 5.03830 5.14971 5.33212 5.50100 5.58452 5.67813 5.71742 5.76498 5.86218 5.98179 6.03514 6.09011 6.30817 6.38354 6.53127 6.64820 6.80845 6.99650 7.20750 7.45619 7.49737 7.64726 7.68946 8.10627 8.23379 8.55622 9.18400 10.67820 Molecular weight = 347.11amu Principal moments of inertia in cm(-1) A = 0.023054 B = 0.002076 C = 0.001976 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1214.234699 B =13482.427586 C =14164.723257 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C 0.175 3.825 3 C -0.339 4.339 4 C 0.609 3.391 5 O -0.530 6.530 6 N -0.673 5.673 7 C 0.175 3.825 8 C -0.115 4.115 9 C -0.045 4.045 10 C -0.133 4.133 11 C 0.534 3.466 12 O -0.516 6.516 13 O -0.510 6.510 14 C -0.067 4.067 15 C 0.053 3.947 16 F -0.130 7.130 17 C 0.061 3.939 18 N -0.290 5.290 19 N -0.310 5.310 20 C 0.250 3.750 21 C -0.543 4.543 22 H 0.065 0.935 23 C 0.068 3.932 24 N -0.888 5.888 25 Si 0.909 3.091 26 H -0.274 1.274 27 H -0.283 1.283 28 H -0.273 1.273 29 H 0.086 0.914 30 H 0.075 0.925 31 H 0.094 0.906 32 H 0.416 0.584 33 H 0.163 0.837 34 H 0.148 0.852 35 H 0.415 0.585 36 H 0.152 0.848 37 H 0.178 0.822 38 H 0.058 0.942 39 H 0.058 0.942 40 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.346 23.117 1.210 23.151 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.036 3.964 3 C -0.354 4.354 4 C 0.402 3.598 5 O -0.407 6.407 6 N -0.316 5.316 7 C 0.077 3.923 8 C -0.136 4.136 9 C -0.064 4.064 10 C -0.135 4.135 11 C 0.378 3.622 12 O -0.406 6.406 13 O -0.322 6.322 14 C -0.087 4.087 15 C 0.031 3.969 16 F -0.109 7.109 17 C -0.126 4.126 18 N -0.110 5.110 19 N -0.086 5.086 20 C 0.133 3.867 21 C -0.581 4.581 22 H 0.083 0.917 23 C -0.136 4.136 24 N -0.525 5.525 25 Si 0.736 3.264 26 H -0.199 1.199 27 H -0.208 1.208 28 H -0.198 1.198 29 H 0.105 0.895 30 H 0.094 0.906 31 H 0.113 0.887 32 H 0.253 0.747 33 H 0.180 0.820 34 H 0.166 0.834 35 H 0.274 0.726 36 H 0.170 0.830 37 H 0.195 0.805 38 H 0.076 0.924 39 H 0.076 0.924 40 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -0.218 21.488 1.429 21.537 hybrid contribution 0.206 0.690 -0.723 1.020 sum -0.012 22.179 0.707 22.190 Atomic orbital electron populations 1.20615 0.86532 1.04037 1.04150 1.21498 0.95054 0.86404 0.93403 1.19426 0.93454 0.91513 1.31004 1.17447 0.84682 0.83886 0.73746 1.90699 1.16370 1.83867 1.49748 1.43295 1.11755 1.03061 1.73537 1.18071 0.95323 0.84096 0.94842 1.21351 0.96115 0.96378 0.99722 1.21443 0.98704 0.91659 0.94598 1.18681 0.97526 0.90793 1.06540 1.20634 0.78064 0.88608 0.74855 1.90908 1.54791 1.54494 1.40387 1.84561 1.40060 1.35711 1.71861 1.20939 0.95570 0.94097 0.98089 1.17162 0.86340 0.93040 1.00340 1.91527 1.45932 1.91214 1.82230 1.23774 0.96213 0.92747 0.99906 1.77190 0.98579 1.12126 1.23056 1.49451 1.02460 1.08444 1.48288 1.19911 0.96527 0.70636 0.99597 1.21177 1.47860 0.98219 0.90841 0.91678 1.24924 0.94351 0.95967 0.98372 1.69898 1.44153 1.07286 1.31212 0.86364 0.78904 0.77810 0.83357 1.19878 1.20831 1.19817 0.89530 0.90589 0.88748 0.74701 0.81966 0.83390 0.72564 0.82988 0.80546 0.92361 0.92409 0.91964 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.56 9.57 36.01 0.34 -1.22 16 2 C 0.17 3.27 7.01 -81.59 -0.57 2.70 16 3 C -0.34 -5.60 6.13 -105.06 -0.64 -6.24 16 4 C 0.61 8.90 7.65 -12.53 -0.10 8.80 16 5 O -0.53 -8.49 12.23 5.27 0.06 -8.43 16 6 N -0.67 -7.76 5.19 -10.78 -0.06 -7.82 16 7 C 0.17 1.94 6.31 -83.66 -0.53 1.41 16 8 C -0.12 -1.21 8.66 -39.47 -0.34 -1.55 16 9 C -0.05 -0.39 9.60 -39.21 -0.38 -0.77 16 10 C -0.13 -1.24 5.88 -104.96 -0.62 -1.86 16 11 C 0.53 4.86 8.26 34.49 0.28 5.14 16 12 O -0.52 -6.06 17.12 -19.27 -0.33 -6.39 16 13 O -0.51 -3.11 12.67 -40.63 -0.51 -3.63 16 14 C -0.07 -0.65 9.56 -39.14 -0.37 -1.02 16 15 C 0.05 0.55 7.30 -39.32 -0.29 0.26 16 16 F -0.13 -1.39 16.94 2.25 0.04 -1.35 16 17 C 0.06 0.98 11.51 -16.97 -0.20 0.79 16 18 N -0.29 -5.89 12.50 30.86 0.39 -5.50 16 19 N -0.31 -6.61 3.56 -57.77 -0.21 -6.81 16 20 C 0.25 5.95 5.97 -5.19 -0.03 5.92 16 21 C -0.54 -14.07 9.39 -34.44 -0.32 -14.39 16 22 H 0.07 1.73 7.81 -52.48 -0.41 1.32 16 23 C 0.07 1.77 5.46 -17.82 -0.10 1.67 16 24 N -0.89 -23.89 13.29 55.43 0.74 -23.16 16 25 Si 0.91 20.20 29.54 -169.99 -5.02 15.18 16 26 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 27 H -0.28 -6.19 7.11 56.52 0.40 -5.78 16 28 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 29 H 0.09 1.39 8.14 -51.93 -0.42 0.97 16 30 H 0.08 1.23 7.05 -51.93 -0.37 0.86 16 31 H 0.09 1.44 6.50 -51.93 -0.34 1.11 16 32 H 0.42 3.88 7.61 -40.82 -0.31 3.57 16 33 H 0.16 1.86 6.18 -52.48 -0.32 1.53 16 34 H 0.15 1.01 7.60 -52.49 -0.40 0.61 16 35 H 0.42 0.69 9.11 45.56 0.42 1.11 16 36 H 0.15 1.35 7.64 -52.49 -0.40 0.95 16 37 H 0.18 1.97 7.51 -52.49 -0.39 1.58 16 38 H 0.06 1.48 8.14 -51.93 -0.42 1.06 16 39 H 0.06 1.36 7.02 -51.93 -0.36 1.00 16 40 H 0.27 6.90 8.31 -40.82 -0.34 6.56 16 LS Contribution 361.22 15.07 5.44 5.44 Total: -1.00 -31.45 361.22 -6.18 -37.63 By element: Atomic # 1 Polarization: 8.04 SS G_CDS: -2.87 Total: 5.17 kcal Atomic # 6 Polarization: 3.51 SS G_CDS: -3.85 Total: -0.35 kcal Atomic # 7 Polarization: -44.15 SS G_CDS: 0.86 Total: -43.29 kcal Atomic # 8 Polarization: -17.66 SS G_CDS: -0.78 Total: -18.44 kcal Atomic # 9 Polarization: -1.39 SS G_CDS: 0.04 Total: -1.35 kcal Atomic # 14 Polarization: 20.20 SS G_CDS: -5.02 Total: 15.18 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -31.45 -6.18 -37.63 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001599983673.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.356 kcal (2) G-P(sol) polarization free energy of solvation -31.446 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.802 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.184 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.630 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.986 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds