Wall clock time and date at job start Wed Apr 1 2020 05:10:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38062 * 126.28740 * 2 1 4 4 C 1.47402 * 126.42301 * 359.97438 * 3 2 1 5 5 O 1.21603 * 119.99633 * 359.97438 * 4 3 2 6 6 N 1.34769 * 119.99851 * 179.97438 * 4 3 2 7 7 C 1.39450 * 119.99473 * 184.51568 * 6 4 3 8 8 C 1.39103 * 119.93196 * 325.23009 * 7 6 4 9 9 C 1.37661 * 120.10716 * 180.23550 * 8 7 6 10 10 C 1.39805 * 119.96087 * 359.51235 * 9 8 7 11 11 C 1.47460 * 120.06861 * 180.25246 * 10 9 8 12 12 O 1.21503 * 119.99652 * 180.23174 * 11 10 9 13 13 O 1.34750 * 119.99943 * 0.23530 * 11 10 9 14 14 C 1.39816 * 119.86357 * 0.48460 * 10 9 8 15 15 C 1.37836 * 119.88791 * 359.75100 * 14 10 9 16 16 F 1.35109 * 119.97972 * 180.02562 * 15 14 10 17 17 C 1.41311 * 107.16220 * 180.23799 * 3 2 1 18 18 N 1.30447 * 108.01937 * 359.59730 * 17 3 2 19 19 N 1.34257 * 126.29715 * 179.97438 * 2 1 3 20 20 C 1.46506 * 125.75116 * 359.97032 * 19 2 1 21 21 C 1.50696 * 109.47207 * 89.99976 * 20 19 2 22 22 H 1.08004 * 120.00526 * 359.97438 * 21 20 19 23 23 C 1.37877 * 120.00100 * 180.02562 * 21 20 19 24 24 N 1.31510 * 119.99927 * 0.02562 * 23 21 20 25 25 Si 1.86799 * 120.00276 * 179.97438 * 23 21 20 26 26 H 1.48504 * 109.46866 * 60.00199 * 25 23 21 27 27 H 1.48498 * 109.47275 * 179.97438 * 25 23 21 28 28 H 1.48492 * 109.47513 * 300.00574 * 25 23 21 29 29 H 1.09004 * 109.47067 * 89.97816 * 1 2 3 30 30 H 1.09001 * 109.47107 * 209.96739 * 1 2 3 31 31 H 1.08991 * 109.47336 * 329.97546 * 1 2 3 32 32 H 0.97001 * 120.00697 * 4.51982 * 6 4 3 33 33 H 1.08003 * 119.94848 * 359.95128 * 8 7 6 34 34 H 1.08001 * 120.01845 * 179.74153 * 9 8 7 35 35 H 0.96703 * 117.00304 * 180.02562 * 13 11 10 36 36 H 1.07997 * 120.05656 * 179.76914 * 14 10 9 37 37 H 1.07997 * 125.98619 * 179.76199 * 17 3 2 38 38 H 1.08997 * 109.47085 * 209.99963 * 20 19 2 39 39 H 1.09000 * 109.47074 * 329.99843 * 20 19 2 40 40 H 0.97008 * 120.00266 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3241 1.1129 0.0000 4 6 1.8861 2.5203 -0.0005 5 8 0.6998 2.7878 -0.0015 6 7 2.8002 3.5105 0.0001 7 6 2.3884 4.8395 0.0946 8 6 1.1998 5.2421 -0.5054 9 6 0.7922 6.5541 -0.4184 10 6 1.5687 7.4815 0.2827 11 6 1.1316 8.8863 0.3821 12 8 1.8096 9.6920 0.9882 13 8 -0.0198 9.2763 -0.1991 14 6 2.7632 7.0752 0.8853 15 6 3.1681 5.7611 0.7904 16 9 4.3217 5.3664 1.3724 17 6 3.6592 0.6499 -0.0056 18 7 3.6341 -0.6543 0.0000 19 7 2.3018 -1.0821 0.0005 20 6 1.8503 -2.4758 0.0017 21 6 1.6948 -2.9547 -1.4186 22 1 1.9104 -2.2876 -2.2402 23 6 1.2764 -4.2443 -1.6694 24 7 1.0125 -5.0562 -0.6691 25 14 1.0830 -4.8379 -3.4300 26 1 2.3887 -4.7416 -4.1310 27 1 0.6255 -6.2506 -3.4287 28 1 0.0821 -3.9934 -4.1300 29 1 -0.3633 0.0004 -1.0277 30 1 -0.3633 -0.8903 0.5133 31 1 -0.3633 0.8897 0.5142 32 1 3.7446 3.2990 -0.0654 33 1 0.5980 4.5253 -1.0443 34 1 -0.1288 6.8661 -0.8883 35 1 -0.2647 10.2073 -0.1072 36 1 3.3674 7.7898 1.4245 37 1 4.5451 1.2676 -0.0107 38 1 2.5851 -3.0953 0.5157 39 1 0.8918 -2.5467 0.5160 40 1 0.7184 -5.9637 -0.8455 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001599983673.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:10:58 Heat of formation + Delta-G solvation = -94.304153 kcal Electronic energy + Delta-G solvation = -28768.789492 eV Core-core repulsion = 24270.726883 eV Total energy + Delta-G solvation = -4498.062609 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 347.111 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -50.01908 -42.47481 -41.56216 -40.89946 -39.06812 -37.09508 -36.07886 -35.77016 -33.87020 -32.88835 -31.85299 -31.36125 -29.18667 -28.25964 -26.10809 -25.22463 -24.03131 -23.63987 -22.47682 -21.30343 -20.74005 -19.45450 -19.23497 -18.86713 -18.45076 -18.27279 -17.32621 -17.03535 -16.86894 -16.71884 -16.50272 -16.41002 -16.19562 -15.78633 -15.57744 -15.13272 -14.89386 -14.72610 -14.32824 -14.11747 -14.09057 -13.71181 -13.60815 -13.54166 -13.52677 -13.10715 -12.99478 -12.76221 -12.68631 -12.56974 -12.30085 -11.89572 -11.86261 -11.76985 -11.59695 -10.89884 -10.75708 -10.31250 -10.04387 -9.68635 -9.31171 -8.37881 -6.54176 -0.63419 0.04602 0.57278 1.20712 1.38841 1.39730 1.40469 1.47276 1.55694 1.93155 2.01474 2.32113 2.33297 2.57134 2.94737 3.02936 3.55091 3.64681 3.69692 3.93336 3.95517 3.98949 4.03854 4.18604 4.32192 4.48886 4.62035 4.77328 4.80784 4.88424 4.94374 4.97452 5.05891 5.08364 5.15273 5.23441 5.48694 5.56405 5.59424 5.69373 5.74197 6.00011 6.23163 6.54123 6.78507 6.96174 7.02304 7.16969 8.69792 Molecular weight = 347.11amu Principal moments of inertia in cm(-1) A = 0.023054 B = 0.002076 C = 0.001976 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1214.234699 B =13482.427586 C =14164.723257 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C 0.157 3.843 3 C -0.334 4.334 4 C 0.615 3.385 5 O -0.544 6.544 6 N -0.660 5.660 7 C 0.160 3.840 8 C -0.121 4.121 9 C -0.032 4.032 10 C -0.134 4.134 11 C 0.541 3.459 12 O -0.546 6.546 13 O -0.500 6.500 14 C -0.067 4.067 15 C 0.054 3.946 16 F -0.133 7.133 17 C 0.081 3.919 18 N -0.334 5.334 19 N -0.336 5.336 20 C 0.266 3.734 21 C -0.555 4.555 22 H 0.054 0.946 23 C 0.024 3.976 24 N -0.916 5.916 25 Si 0.970 3.030 26 H -0.274 1.274 27 H -0.275 1.275 28 H -0.265 1.265 29 H 0.088 0.912 30 H 0.071 0.929 31 H 0.106 0.894 32 H 0.426 0.574 33 H 0.154 0.846 34 H 0.170 0.830 35 H 0.436 0.564 36 H 0.158 0.842 37 H 0.226 0.774 38 H 0.031 0.969 39 H 0.053 0.947 40 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.596 25.352 0.290 25.360 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.020 3.980 3 C -0.349 4.349 4 C 0.407 3.593 5 O -0.423 6.423 6 N -0.305 5.305 7 C 0.062 3.938 8 C -0.141 4.141 9 C -0.050 4.050 10 C -0.136 4.136 11 C 0.387 3.613 12 O -0.438 6.438 13 O -0.314 6.314 14 C -0.087 4.087 15 C 0.032 3.968 16 F -0.111 7.111 17 C -0.106 4.106 18 N -0.154 5.154 19 N -0.112 5.112 20 C 0.148 3.852 21 C -0.593 4.593 22 H 0.072 0.928 23 C -0.178 4.178 24 N -0.554 5.554 25 Si 0.794 3.206 26 H -0.199 1.199 27 H -0.200 1.200 28 H -0.190 1.190 29 H 0.106 0.894 30 H 0.090 0.910 31 H 0.124 0.876 32 H 0.266 0.734 33 H 0.172 0.828 34 H 0.188 0.812 35 H 0.299 0.701 36 H 0.176 0.824 37 H 0.242 0.758 38 H 0.049 0.951 39 H 0.071 0.929 40 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -0.471 23.779 0.505 23.789 hybrid contribution 0.272 0.223 -0.411 0.541 sum -0.199 24.002 0.094 24.003 Atomic orbital electron populations 1.20619 0.85423 1.04334 1.04315 1.22001 0.96076 0.86485 0.93435 1.19664 0.93390 0.92165 1.29667 1.17123 0.84788 0.83572 0.73835 1.90695 1.17098 1.83997 1.50490 1.43020 1.11822 1.02855 1.72764 1.18161 0.95993 0.83703 0.95913 1.21337 0.95902 0.96976 0.99909 1.21602 0.99066 0.90697 0.93669 1.18813 0.97378 0.91259 1.06147 1.20518 0.78338 0.88133 0.74304 1.90907 1.55896 1.55187 1.41847 1.84514 1.38423 1.37664 1.70818 1.21049 0.95819 0.93876 0.97917 1.17139 0.86200 0.93123 1.00341 1.91522 1.46059 1.91267 1.82293 1.24541 0.97654 0.91706 0.96727 1.77140 0.98379 1.14353 1.25481 1.49149 1.03374 1.07886 1.50837 1.19402 0.95397 0.72208 0.98229 1.21349 1.47977 0.98475 0.91519 0.92807 1.25724 0.93868 0.96002 1.02196 1.69986 1.44719 1.07641 1.33067 0.85412 0.78822 0.77650 0.78692 1.19915 1.19981 1.18970 0.89357 0.91039 0.87567 0.73441 0.82830 0.81216 0.70140 0.82406 0.75790 0.95079 0.92917 0.91673 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.93 9.57 71.24 0.68 -2.25 16 2 C 0.16 5.90 7.01 42.15 0.30 6.19 16 3 C -0.33 -10.69 6.13 -20.15 -0.12 -10.82 16 4 C 0.61 17.00 7.65 86.66 0.66 17.67 16 5 O -0.54 -16.73 12.23 -4.04 -0.05 -16.78 16 6 N -0.66 -13.89 5.19 -306.29 -1.59 -15.48 16 7 C 0.16 3.23 6.31 38.40 0.24 3.48 16 8 C -0.12 -2.31 8.66 22.34 0.19 -2.11 16 9 C -0.03 -0.47 9.60 22.51 0.22 -0.26 16 10 C -0.13 -2.18 5.88 -20.09 -0.12 -2.30 16 11 C 0.54 8.58 8.26 70.25 0.58 9.16 16 12 O -0.55 -11.88 17.12 19.83 0.34 -11.54 16 13 O -0.50 -4.57 12.67 -56.60 -0.72 -5.29 16 14 C -0.07 -1.16 9.56 22.56 0.22 -0.95 16 15 C 0.05 1.01 7.30 22.44 0.16 1.18 16 16 F -0.13 -2.58 16.94 44.97 0.76 -1.82 16 17 C 0.08 2.48 11.51 85.65 0.99 3.46 16 18 N -0.33 -13.63 12.50 -56.26 -0.70 -14.33 16 19 N -0.34 -14.67 3.56 -336.68 -1.20 -15.87 16 20 C 0.27 13.22 5.97 85.63 0.51 13.73 16 21 C -0.56 -29.51 9.39 25.60 0.24 -29.27 16 22 H 0.05 2.92 7.81 -2.91 -0.02 2.90 16 23 C 0.02 1.24 5.46 84.66 0.46 1.71 16 24 N -0.92 -50.15 13.29 21.45 0.28 -49.86 16 25 Si 0.97 41.46 29.54 68.60 2.03 43.48 16 26 H -0.27 -11.64 7.11 99.48 0.71 -10.94 16 27 H -0.28 -11.30 7.11 99.48 0.71 -10.60 16 28 H -0.26 -10.91 7.11 99.48 0.71 -10.20 16 29 H 0.09 2.85 8.14 -2.38 -0.02 2.83 16 30 H 0.07 2.38 7.05 -2.39 -0.02 2.36 16 31 H 0.11 3.20 6.50 -2.39 -0.02 3.19 16 32 H 0.43 6.88 7.61 -92.71 -0.71 6.17 16 33 H 0.15 3.28 6.18 -2.91 -0.02 3.26 16 34 H 0.17 1.76 7.60 -2.91 -0.02 1.74 16 35 H 0.44 0.12 9.11 -74.06 -0.67 -0.56 16 36 H 0.16 2.55 7.64 -2.91 -0.02 2.53 16 37 H 0.23 4.30 7.51 -2.91 -0.02 4.27 16 38 H 0.03 1.68 8.14 -2.39 -0.02 1.66 16 39 H 0.05 2.61 7.02 -2.39 -0.02 2.60 16 40 H 0.27 14.09 8.31 -92.70 -0.77 13.32 16 Total: -1.00 -68.48 361.22 4.14 -64.34 By element: Atomic # 1 Polarization: 14.76 SS G_CDS: -0.22 Total: 14.53 kcal Atomic # 6 Polarization: 3.40 SS G_CDS: 5.21 Total: 8.61 kcal Atomic # 7 Polarization: -92.33 SS G_CDS: -3.21 Total: -95.54 kcal Atomic # 8 Polarization: -33.18 SS G_CDS: -0.43 Total: -33.61 kcal Atomic # 9 Polarization: -2.58 SS G_CDS: 0.76 Total: -1.82 kcal Atomic # 14 Polarization: 41.46 SS G_CDS: 2.03 Total: 43.48 kcal Total: -68.48 4.14 -64.34 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001599983673.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.959 kcal (2) G-P(sol) polarization free energy of solvation -68.483 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.442 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.138 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.345 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.304 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds