Wall clock time and date at job start Wed Apr 1 2020 04:06:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31383 * 1 3 3 Si 1.86792 * 119.99904 * 2 1 4 4 H 1.48505 * 109.47447 * 270.00234 * 3 2 1 5 5 H 1.48495 * 109.47187 * 30.00358 * 3 2 1 6 6 H 1.48499 * 109.47274 * 150.00462 * 3 2 1 7 7 C 1.39023 * 119.99782 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99493 * 186.86898 * 7 2 1 9 9 N 1.36898 * 120.00324 * 6.59154 * 7 2 1 10 10 C 1.46501 * 120.00014 * 41.65387 * 9 7 2 11 11 C 1.52999 * 109.47370 * 89.99803 * 10 9 7 12 12 C 1.50697 * 109.46921 * 179.97438 * 11 10 9 13 13 O 1.20823 * 120.00200 * 359.97438 * 12 11 10 14 14 O 1.34228 * 119.99827 * 179.97438 * 12 11 10 15 15 C 1.34776 * 119.99965 * 221.65022 * 9 7 2 16 16 O 1.21639 * 119.99921 * 184.70424 * 15 9 7 17 17 C 1.47348 * 120.00253 * 4.70485 * 15 9 7 18 18 C 1.39961 * 120.21583 * 266.93009 * 17 15 9 19 19 F 1.35103 * 120.08268 * 359.97438 * 18 17 15 20 20 C 1.38172 * 119.83837 * 179.97438 * 18 17 15 21 21 C 1.38405 * 120.28675 * 359.97438 * 20 18 17 22 22 C 1.38182 * 120.44416 * 359.97438 * 21 20 18 23 23 C 1.38659 * 120.14891 * 359.79352 * 22 21 20 24 24 N 1.39704 * 120.14072 * 180.23772 * 23 22 21 25 25 C 1.35853 * 126.10445 * 359.91393 * 24 23 22 26 26 C 1.35287 * 107.61780 * 179.90523 * 25 24 23 27 27 C 1.39963 * 107.96275 * 0.36550 * 26 25 24 28 28 N 1.30824 * 108.37120 * 359.77288 * 27 26 25 29 29 H 0.96997 * 120.00454 * 4.99794 * 1 2 3 30 30 H 1.09006 * 109.46797 * 209.99981 * 10 9 7 31 31 H 1.09000 * 109.46745 * 329.99352 * 10 9 7 32 32 H 1.09000 * 109.46735 * 300.00232 * 11 10 9 33 33 H 1.09003 * 109.46825 * 59.99973 * 11 10 9 34 34 H 0.96701 * 117.00135 * 179.97438 * 14 12 11 35 35 H 1.08000 * 119.85566 * 179.97438 * 20 18 17 36 36 H 1.07995 * 119.77767 * 180.02562 * 21 20 18 37 37 H 1.07999 * 119.91915 * 180.02562 * 22 21 20 38 38 H 1.07997 * 126.19260 * 0.02562 * 25 24 23 39 39 H 1.07994 * 126.01880 * 180.16648 * 26 25 24 40 40 H 1.08002 * 125.81131 * 179.75718 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3138 0.0000 0.0000 3 14 2.2478 1.6177 0.0000 4 1 2.4953 2.0465 -1.4001 5 1 1.4453 2.6526 0.7001 6 1 3.5454 1.4401 0.6999 7 6 2.0089 -1.2040 -0.0005 8 1 3.0832 -1.2074 0.1113 9 7 1.3312 -2.3856 -0.1372 10 6 0.2342 -2.4935 -1.1021 11 6 0.7869 -2.9497 -2.4539 12 6 -0.3417 -3.0612 -3.4462 13 8 -1.4722 -2.8030 -3.1070 14 8 -0.0910 -3.4476 -4.7070 15 6 1.6733 -3.4496 0.6160 16 8 1.1297 -4.5227 0.4353 17 6 2.7059 -3.3131 1.6583 18 6 4.0432 -3.6061 1.3676 19 9 4.3928 -4.0162 0.1287 20 6 5.0052 -3.4749 2.3508 21 6 4.6519 -3.0546 3.6213 22 6 3.3353 -2.7612 3.9209 23 6 2.3558 -2.8819 2.9468 24 7 1.0255 -2.5805 3.2486 25 6 0.5526 -2.1613 4.4512 26 6 -0.7820 -1.9788 4.3253 27 6 -1.1399 -2.3026 3.0115 28 7 -0.0600 -2.6625 2.3668 29 1 -0.4851 0.8368 -0.0732 30 1 -0.4948 -3.2204 -0.7436 31 1 -0.2469 -1.5220 -1.2153 32 1 1.5159 -2.2228 -2.8122 33 1 1.2680 -3.9212 -2.3405 34 1 -0.8471 -3.5048 -5.3072 35 1 6.0372 -3.7012 2.1269 36 1 5.4105 -2.9545 4.3834 37 1 3.0691 -2.4335 4.9150 38 1 1.1366 -2.0008 5.3453 39 1 -1.4535 -1.6453 5.1026 40 1 -2.1378 -2.2624 2.6002 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001608185597.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:06:57 Heat of formation + Delta-G solvation = -43.175825 kcal Electronic energy + Delta-G solvation = -31714.453267 eV Core-core repulsion = 27218.607749 eV Total energy + Delta-G solvation = -4495.845518 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 347.111 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -48.53452 -41.00074 -39.73374 -38.94097 -37.69007 -35.70834 -34.83214 -33.08349 -31.86290 -31.24694 -29.99957 -29.47490 -28.63946 -25.18113 -24.58982 -23.25242 -22.75221 -20.78103 -20.35378 -20.13216 -19.32429 -18.18123 -17.70861 -17.28588 -16.17997 -16.10395 -15.91498 -15.74811 -15.43396 -15.32875 -14.95679 -14.58037 -14.31634 -14.16327 -14.08494 -13.36487 -13.33914 -13.01266 -12.78005 -12.56922 -12.40002 -12.30784 -12.02203 -11.80721 -11.73308 -11.27966 -11.17801 -11.06229 -10.96624 -10.76643 -10.39254 -10.03581 -9.97306 -9.94766 -9.86617 -9.13157 -8.73640 -8.61976 -8.41492 -7.68223 -7.48492 -6.24601 -4.15123 1.05743 1.30636 2.58253 2.76292 2.84269 3.09197 3.18686 3.19867 3.37439 3.49865 3.75193 3.88391 4.11250 4.39093 4.67743 4.84582 4.97762 5.02178 5.18127 5.28882 5.42132 5.51990 5.70400 5.78185 5.91495 5.94961 6.03015 6.13851 6.17244 6.29299 6.34297 6.37611 6.47888 6.51283 6.89015 6.90966 7.03879 7.13454 7.34900 7.56808 7.63325 7.95374 8.23121 8.37088 8.40722 9.07349 9.46389 9.91148 10.68055 Molecular weight = 347.11amu Principal moments of inertia in cm(-1) A = 0.009102 B = 0.005353 C = 0.005009 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3075.630011 B = 5229.094118 C = 5588.693151 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.848 5.848 2 C 0.051 3.949 3 Si 0.909 3.091 4 H -0.276 1.276 5 H -0.283 1.283 6 H -0.270 1.270 7 C -0.337 4.337 8 H 0.081 0.919 9 N -0.414 5.414 10 C 0.127 3.873 11 C -0.127 4.127 12 C 0.484 3.516 13 O -0.514 6.514 14 O -0.526 6.526 15 C 0.539 3.461 16 O -0.586 6.586 17 C -0.108 4.108 18 C 0.144 3.856 19 F -0.128 7.128 20 C -0.175 4.175 21 C -0.066 4.066 22 C -0.164 4.164 23 C 0.229 3.771 24 N -0.324 5.324 25 C 0.035 3.965 26 C -0.254 4.254 27 C 0.048 3.952 28 N -0.211 5.211 29 H 0.268 0.732 30 H 0.062 0.938 31 H 0.130 0.870 32 H 0.103 0.897 33 H 0.094 0.906 34 H 0.400 0.600 35 H 0.138 0.862 36 H 0.138 0.862 37 H 0.134 0.866 38 H 0.171 0.829 39 H 0.147 0.853 40 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.125 -1.696 5.948 8.032 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.483 5.483 2 C -0.156 4.156 3 Si 0.736 3.264 4 H -0.202 1.202 5 H -0.209 1.209 6 H -0.195 1.195 7 C -0.465 4.465 8 H 0.099 0.901 9 N -0.130 5.130 10 C 0.003 3.997 11 C -0.165 4.165 12 C 0.326 3.674 13 O -0.401 6.401 14 O -0.337 6.337 15 C 0.326 3.674 16 O -0.471 6.471 17 C -0.115 4.115 18 C 0.123 3.877 19 F -0.106 7.106 20 C -0.194 4.194 21 C -0.085 4.085 22 C -0.185 4.185 23 C 0.133 3.867 24 N -0.099 5.099 25 C -0.106 4.106 26 C -0.283 4.283 27 C -0.142 4.142 28 N -0.027 5.027 29 H 0.079 0.921 30 H 0.081 0.919 31 H 0.147 0.853 32 H 0.121 0.879 33 H 0.112 0.888 34 H 0.257 0.743 35 H 0.156 0.844 36 H 0.156 0.844 37 H 0.152 0.848 38 H 0.188 0.812 39 H 0.165 0.835 40 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges 5.214 -2.363 5.114 7.676 hybrid contribution -0.308 1.343 0.135 1.385 sum 4.906 -1.020 5.249 7.257 Atomic orbital electron populations 1.69707 1.05708 1.27450 1.45473 1.25399 0.95249 0.99331 0.95617 0.86204 0.79589 0.82065 0.78564 1.20200 1.20855 1.19473 1.19292 0.91361 0.83033 1.52807 0.90119 1.42965 1.30242 1.09136 1.30629 1.21352 0.89436 1.05307 0.83591 1.21913 0.95504 1.04529 0.94601 1.23815 0.90810 0.71747 0.81022 1.90690 1.24650 1.45990 1.78804 1.84602 1.44560 1.81195 1.23358 1.17574 0.83217 0.85501 0.81148 1.90651 1.56925 1.28188 1.71326 1.19720 0.93872 1.02863 0.94996 1.17418 0.91415 0.98382 0.80498 1.91515 1.92239 1.87427 1.39452 1.20969 0.99342 1.05930 0.93204 1.20675 0.95071 0.96966 0.95807 1.20668 0.92321 1.06684 0.98840 1.17041 0.80846 0.96067 0.92711 1.45895 1.05244 1.50509 1.08293 1.22553 0.95587 1.02115 0.90300 1.21494 0.94617 1.13575 0.98608 1.24009 0.98426 0.99052 0.92699 1.77903 0.92118 1.19663 1.12971 0.92128 0.91902 0.85323 0.87926 0.88785 0.74299 0.84409 0.84391 0.84836 0.81226 0.83546 0.80183 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -21.83 10.90 55.50 0.60 -21.23 16 2 C 0.05 1.26 5.26 -17.45 -0.09 1.17 16 3 Si 0.91 19.60 29.56 -169.99 -5.03 14.57 16 4 H -0.28 -5.90 7.11 56.52 0.40 -5.50 16 5 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 6 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 7 C -0.34 -8.48 8.54 -15.00 -0.13 -8.61 16 8 H 0.08 2.03 7.47 -52.48 -0.39 1.64 16 9 N -0.41 -10.40 2.19 -116.05 -0.25 -10.66 16 10 C 0.13 3.13 4.25 -4.04 -0.02 3.11 16 11 C -0.13 -2.65 6.14 -27.88 -0.17 -2.83 16 12 C 0.48 9.38 8.33 36.00 0.30 9.68 16 13 O -0.51 -11.37 16.74 -18.75 -0.31 -11.69 16 14 O -0.53 -8.02 13.42 -39.25 -0.53 -8.55 16 15 C 0.54 13.62 4.14 -12.55 -0.05 13.57 16 16 O -0.59 -16.30 16.71 5.24 0.09 -16.21 16 17 C -0.11 -2.38 4.21 -104.77 -0.44 -2.82 16 18 C 0.14 2.75 7.22 -38.96 -0.28 2.47 16 19 F -0.13 -2.56 16.83 2.25 0.04 -2.52 16 20 C -0.17 -2.52 10.01 -39.54 -0.40 -2.92 16 21 C -0.07 -0.83 10.03 -39.54 -0.40 -1.22 16 22 C -0.16 -2.38 9.44 -39.45 -0.37 -2.75 16 23 C 0.23 4.47 6.70 -83.34 -0.56 3.92 16 24 N -0.32 -6.55 3.80 -10.36 -0.04 -6.59 16 25 C 0.03 0.55 10.82 -16.82 -0.18 0.37 16 26 C -0.25 -4.03 10.80 -39.99 -0.43 -4.46 16 27 C 0.05 0.92 12.02 -17.33 -0.21 0.72 16 28 N -0.21 -4.84 9.51 30.64 0.29 -4.55 16 29 H 0.27 6.65 8.32 -40.82 -0.34 6.31 16 30 H 0.06 1.68 7.45 -51.93 -0.39 1.30 16 31 H 0.13 3.41 5.19 -51.93 -0.27 3.14 16 32 H 0.10 2.07 8.14 -51.93 -0.42 1.64 16 33 H 0.09 1.97 8.14 -51.93 -0.42 1.55 16 34 H 0.40 4.10 9.10 45.56 0.41 4.52 16 35 H 0.14 1.55 8.06 -52.49 -0.42 1.13 16 36 H 0.14 1.14 8.06 -52.49 -0.42 0.72 16 37 H 0.13 1.47 6.74 -52.49 -0.35 1.11 16 38 H 0.17 1.90 7.05 -52.49 -0.37 1.53 16 39 H 0.15 1.79 8.06 -52.49 -0.42 1.37 16 40 H 0.18 3.08 8.06 -52.49 -0.42 2.66 16 LS Contribution 358.70 15.07 5.41 5.41 Total: -1.00 -34.43 358.70 -6.19 -40.62 By element: Atomic # 1 Polarization: 15.03 SS G_CDS: -3.03 Total: 12.00 kcal Atomic # 6 Polarization: 12.82 SS G_CDS: -3.43 Total: 9.39 kcal Atomic # 7 Polarization: -43.62 SS G_CDS: 0.60 Total: -43.02 kcal Atomic # 8 Polarization: -35.69 SS G_CDS: -0.75 Total: -36.44 kcal Atomic # 9 Polarization: -2.56 SS G_CDS: 0.04 Total: -2.52 kcal Atomic # 14 Polarization: 19.60 SS G_CDS: -5.03 Total: 14.57 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -34.43 -6.19 -40.62 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001608185597.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.557 kcal (2) G-P(sol) polarization free energy of solvation -34.429 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.986 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.190 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.619 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.176 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds