Wall clock time and date at job start Wed Apr 1 2020 04:06:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31383 * 1 3 3 Si 1.86792 * 119.99904 * 2 1 4 4 H 1.48505 * 109.47447 * 270.00234 * 3 2 1 5 5 H 1.48495 * 109.47187 * 30.00358 * 3 2 1 6 6 H 1.48499 * 109.47274 * 150.00462 * 3 2 1 7 7 C 1.39023 * 119.99782 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99493 * 186.86898 * 7 2 1 9 9 N 1.36898 * 120.00324 * 6.59154 * 7 2 1 10 10 C 1.46501 * 120.00014 * 41.65387 * 9 7 2 11 11 C 1.52999 * 109.47370 * 89.99803 * 10 9 7 12 12 C 1.50697 * 109.46921 * 179.97438 * 11 10 9 13 13 O 1.20823 * 120.00200 * 359.97438 * 12 11 10 14 14 O 1.34228 * 119.99827 * 179.97438 * 12 11 10 15 15 C 1.34776 * 119.99965 * 221.65022 * 9 7 2 16 16 O 1.21639 * 119.99921 * 184.70424 * 15 9 7 17 17 C 1.47348 * 120.00253 * 4.70485 * 15 9 7 18 18 C 1.39961 * 120.21583 * 266.93009 * 17 15 9 19 19 F 1.35103 * 120.08268 * 359.97438 * 18 17 15 20 20 C 1.38172 * 119.83837 * 179.97438 * 18 17 15 21 21 C 1.38405 * 120.28675 * 359.97438 * 20 18 17 22 22 C 1.38182 * 120.44416 * 359.97438 * 21 20 18 23 23 C 1.38659 * 120.14891 * 359.79352 * 22 21 20 24 24 N 1.39704 * 120.14072 * 180.23772 * 23 22 21 25 25 C 1.35853 * 126.10445 * 359.91393 * 24 23 22 26 26 C 1.35287 * 107.61780 * 179.90523 * 25 24 23 27 27 C 1.39963 * 107.96275 * 0.36550 * 26 25 24 28 28 N 1.30824 * 108.37120 * 359.77288 * 27 26 25 29 29 H 0.96997 * 120.00454 * 4.99794 * 1 2 3 30 30 H 1.09006 * 109.46797 * 209.99981 * 10 9 7 31 31 H 1.09000 * 109.46745 * 329.99352 * 10 9 7 32 32 H 1.09000 * 109.46735 * 300.00232 * 11 10 9 33 33 H 1.09003 * 109.46825 * 59.99973 * 11 10 9 34 34 H 0.96701 * 117.00135 * 179.97438 * 14 12 11 35 35 H 1.08000 * 119.85566 * 179.97438 * 20 18 17 36 36 H 1.07995 * 119.77767 * 180.02562 * 21 20 18 37 37 H 1.07999 * 119.91915 * 180.02562 * 22 21 20 38 38 H 1.07997 * 126.19260 * 0.02562 * 25 24 23 39 39 H 1.07994 * 126.01880 * 180.16648 * 26 25 24 40 40 H 1.08002 * 125.81131 * 179.75718 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3138 0.0000 0.0000 3 14 2.2478 1.6177 0.0000 4 1 2.4953 2.0465 -1.4001 5 1 1.4453 2.6526 0.7001 6 1 3.5454 1.4401 0.6999 7 6 2.0089 -1.2040 -0.0005 8 1 3.0832 -1.2074 0.1113 9 7 1.3312 -2.3856 -0.1372 10 6 0.2342 -2.4935 -1.1021 11 6 0.7869 -2.9497 -2.4539 12 6 -0.3417 -3.0612 -3.4462 13 8 -1.4722 -2.8030 -3.1070 14 8 -0.0910 -3.4476 -4.7070 15 6 1.6733 -3.4496 0.6160 16 8 1.1297 -4.5227 0.4353 17 6 2.7059 -3.3131 1.6583 18 6 4.0432 -3.6061 1.3676 19 9 4.3928 -4.0162 0.1287 20 6 5.0052 -3.4749 2.3508 21 6 4.6519 -3.0546 3.6213 22 6 3.3353 -2.7612 3.9209 23 6 2.3558 -2.8819 2.9468 24 7 1.0255 -2.5805 3.2486 25 6 0.5526 -2.1613 4.4512 26 6 -0.7820 -1.9788 4.3253 27 6 -1.1399 -2.3026 3.0115 28 7 -0.0600 -2.6625 2.3668 29 1 -0.4851 0.8368 -0.0732 30 1 -0.4948 -3.2204 -0.7436 31 1 -0.2469 -1.5220 -1.2153 32 1 1.5159 -2.2228 -2.8122 33 1 1.2680 -3.9212 -2.3405 34 1 -0.8471 -3.5048 -5.3072 35 1 6.0372 -3.7012 2.1269 36 1 5.4105 -2.9545 4.3834 37 1 3.0691 -2.4335 4.9150 38 1 1.1366 -2.0008 5.3453 39 1 -1.4535 -1.6453 5.1026 40 1 -2.1378 -2.2624 2.6002 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001608185597.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:06:56 Heat of formation + Delta-G solvation = -66.309830 kcal Electronic energy + Delta-G solvation = -31715.456433 eV Core-core repulsion = 27218.607749 eV Total energy + Delta-G solvation = -4496.848684 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 347.111 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -49.97071 -42.35132 -41.34742 -40.51849 -39.18893 -37.24130 -36.74083 -34.37803 -33.76040 -32.85937 -31.56127 -30.79942 -29.91870 -27.09319 -26.23037 -24.60434 -24.16354 -22.31570 -21.76844 -21.51619 -21.08932 -19.70693 -19.22750 -18.77581 -17.93110 -17.63504 -17.31005 -17.21509 -17.02872 -16.80992 -16.49676 -16.14011 -15.89580 -15.69049 -15.50238 -15.10290 -14.63986 -14.55773 -14.32805 -14.12516 -14.00118 -13.61146 -13.53629 -13.27522 -12.99453 -12.92176 -12.78761 -12.70201 -12.59674 -12.58144 -12.11797 -11.91500 -11.68811 -11.36357 -11.18533 -11.04220 -10.56628 -9.98060 -9.78451 -9.43169 -8.97942 -8.14366 -6.11342 -0.18898 0.04751 1.14864 1.34133 1.37909 1.41550 1.51117 1.57629 1.91429 2.01928 2.04767 2.33029 2.60108 3.02620 3.11073 3.14442 3.67681 3.90858 3.97683 4.05182 4.10167 4.11671 4.17464 4.32464 4.33937 4.48504 4.72590 4.75149 4.83846 4.90495 5.03509 5.07202 5.10077 5.23093 5.25146 5.36171 5.50303 5.62540 5.69966 5.82662 6.04181 6.33657 6.43358 6.85872 6.97080 7.14270 7.56332 8.02561 8.78220 Molecular weight = 347.11amu Principal moments of inertia in cm(-1) A = 0.009102 B = 0.005353 C = 0.005009 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3075.630011 B = 5229.094118 C = 5588.693151 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.873 5.873 2 C 0.014 3.986 3 Si 0.972 3.028 4 H -0.271 1.271 5 H -0.285 1.285 6 H -0.261 1.261 7 C -0.342 4.342 8 H 0.078 0.922 9 N -0.418 5.418 10 C 0.137 3.863 11 C -0.120 4.120 12 C 0.497 3.503 13 O -0.546 6.546 14 O -0.507 6.507 15 C 0.537 3.463 16 O -0.633 6.633 17 C -0.159 4.159 18 C 0.112 3.888 19 F -0.146 7.146 20 C -0.160 4.160 21 C -0.040 4.040 22 C -0.150 4.150 23 C 0.196 3.804 24 N -0.338 5.338 25 C 0.042 3.958 26 C -0.255 4.255 27 C 0.026 3.974 28 N -0.282 5.282 29 H 0.266 0.734 30 H 0.025 0.975 31 H 0.111 0.889 32 H 0.113 0.887 33 H 0.090 0.910 34 H 0.427 0.573 35 H 0.175 0.825 36 H 0.200 0.800 37 H 0.178 0.822 38 H 0.225 0.775 39 H 0.184 0.816 40 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.262 -0.319 8.641 11.960 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.509 5.509 2 C -0.191 4.191 3 Si 0.796 3.204 4 H -0.197 1.197 5 H -0.211 1.211 6 H -0.185 1.185 7 C -0.470 4.470 8 H 0.096 0.904 9 N -0.133 5.133 10 C 0.013 3.987 11 C -0.159 4.159 12 C 0.340 3.660 13 O -0.436 6.436 14 O -0.321 6.321 15 C 0.326 3.674 16 O -0.521 6.521 17 C -0.165 4.165 18 C 0.092 3.908 19 F -0.125 7.125 20 C -0.179 4.179 21 C -0.059 4.059 22 C -0.170 4.170 23 C 0.102 3.898 24 N -0.115 5.115 25 C -0.097 4.097 26 C -0.282 4.282 27 C -0.162 4.162 28 N -0.099 5.099 29 H 0.076 0.924 30 H 0.043 0.957 31 H 0.128 0.872 32 H 0.131 0.869 33 H 0.108 0.892 34 H 0.288 0.712 35 H 0.193 0.807 36 H 0.217 0.783 37 H 0.195 0.805 38 H 0.241 0.759 39 H 0.201 0.799 40 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges 8.361 -0.989 7.773 11.459 hybrid contribution -1.258 0.850 -0.661 1.656 sum 7.102 -0.139 7.112 10.052 Atomic orbital electron populations 1.69862 1.07043 1.27888 1.46103 1.26122 0.95853 1.02021 0.95057 0.85241 0.78525 0.77938 0.78676 1.19664 1.21064 1.18514 1.19354 0.91177 0.83256 1.53166 0.90448 1.43059 1.29896 1.09486 1.30875 1.21031 0.89273 1.03034 0.85404 1.21668 0.96172 1.04377 0.93657 1.23278 0.89476 0.71231 0.81980 1.90688 1.25584 1.47625 1.79706 1.84509 1.45827 1.79962 1.21763 1.18107 0.83499 0.84534 0.81278 1.90575 1.59002 1.29780 1.72785 1.19681 0.94199 1.07231 0.95409 1.17900 0.91652 1.00136 0.81149 1.91456 1.92244 1.87914 1.40864 1.21485 0.99881 1.03812 0.92689 1.21434 0.95423 0.93103 0.95897 1.21287 0.91862 1.04554 0.99319 1.17626 0.81692 0.97402 0.93117 1.46095 1.05145 1.51137 1.09144 1.23462 0.96018 0.99883 0.90380 1.21907 0.95511 1.13151 0.97661 1.24355 0.98126 0.99074 0.94685 1.77806 0.93924 1.22362 1.15804 0.92370 0.95654 0.87163 0.86927 0.89184 0.71172 0.80728 0.78305 0.80456 0.75900 0.79852 0.80151 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -46.96 10.90 21.68 0.24 -46.73 16 2 C 0.01 0.69 5.26 84.95 0.45 1.13 16 3 Si 0.97 40.27 29.56 68.60 2.03 42.30 16 4 H -0.27 -10.95 7.11 99.48 0.71 -10.24 16 5 H -0.28 -11.81 7.11 99.48 0.71 -11.10 16 6 H -0.26 -10.34 7.11 99.48 0.71 -9.63 16 7 C -0.34 -17.85 8.54 84.09 0.72 -17.13 16 8 H 0.08 4.02 7.47 -2.91 -0.02 4.00 16 9 N -0.42 -22.40 2.19 -639.32 -1.40 -23.80 16 10 C 0.14 7.30 4.25 86.38 0.37 7.67 16 11 C -0.12 -5.34 6.14 29.85 0.18 -5.16 16 12 C 0.50 19.93 8.33 71.24 0.59 20.52 16 13 O -0.55 -25.29 16.74 21.97 0.37 -24.92 16 14 O -0.51 -15.08 13.42 -51.40 -0.69 -15.77 16 15 C 0.54 29.01 4.14 86.64 0.36 29.36 16 16 O -0.63 -38.35 16.71 -4.15 -0.07 -38.42 16 17 C -0.16 -7.20 4.21 -19.96 -0.08 -7.28 16 18 C 0.11 4.28 7.22 22.67 0.16 4.44 16 19 F -0.15 -6.06 16.83 44.97 0.76 -5.30 16 20 C -0.16 -4.00 10.01 22.29 0.22 -3.78 16 21 C -0.04 -0.77 10.03 22.30 0.22 -0.54 16 22 C -0.15 -3.65 9.44 22.36 0.21 -3.44 16 23 C 0.20 7.52 6.70 38.49 0.26 7.78 16 24 N -0.34 -13.70 3.80 -186.71 -0.71 -14.41 16 25 C 0.04 1.23 10.82 83.39 0.90 2.14 16 26 C -0.25 -7.79 10.80 22.01 0.24 -7.56 16 27 C 0.03 1.07 12.02 85.26 1.02 2.10 16 28 N -0.28 -13.70 9.51 -56.97 -0.54 -14.25 16 29 H 0.27 13.74 8.32 -92.71 -0.77 12.97 16 30 H 0.02 1.49 7.45 -2.38 -0.02 1.47 16 31 H 0.11 6.30 5.19 -2.39 -0.01 6.29 16 32 H 0.11 4.73 8.14 -2.39 -0.02 4.71 16 33 H 0.09 4.06 8.14 -2.39 -0.02 4.04 16 34 H 0.43 8.08 9.10 -74.06 -0.67 7.40 16 35 H 0.18 3.03 8.06 -2.91 -0.02 3.01 16 36 H 0.20 1.47 8.06 -2.91 -0.02 1.44 16 37 H 0.18 2.66 6.74 -2.91 -0.02 2.64 16 38 H 0.22 3.77 7.05 -2.91 -0.02 3.74 16 39 H 0.18 4.00 8.06 -2.91 -0.02 3.97 16 40 H 0.18 6.81 8.06 -2.91 -0.02 6.79 16 Total: -1.00 -85.78 358.70 6.26 -79.53 By element: Atomic # 1 Polarization: 31.06 SS G_CDS: 0.45 Total: 31.51 kcal Atomic # 6 Polarization: 24.43 SS G_CDS: 5.83 Total: 30.26 kcal Atomic # 7 Polarization: -96.77 SS G_CDS: -2.42 Total: -99.18 kcal Atomic # 8 Polarization: -78.72 SS G_CDS: -0.39 Total: -79.11 kcal Atomic # 9 Polarization: -6.06 SS G_CDS: 0.76 Total: -5.30 kcal Atomic # 14 Polarization: 40.27 SS G_CDS: 2.03 Total: 42.30 kcal Total: -85.78 6.26 -79.53 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001608185597.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.217 kcal (2) G-P(sol) polarization free energy of solvation -85.782 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.565 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.255 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.527 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.310 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds