Wall clock time and date at job start Wed Apr 1 2020 05:09:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38621 * 120.44770 * 2 1 4 4 C 1.38579 * 118.40126 * 180.02562 * 3 2 1 5 5 N 1.32345 * 119.10218 * 0.02562 * 4 3 2 6 6 C 1.31782 * 120.82463 * 359.97438 * 5 4 3 7 7 C 1.50693 * 119.12759 * 180.02562 * 6 5 4 8 8 H 1.09002 * 109.47365 * 195.00341 * 7 6 5 9 9 C 1.53003 * 109.47181 * 74.99769 * 7 6 5 10 10 N 1.46506 * 109.47005 * 315.00022 * 7 6 5 11 11 S 1.65596 * 119.99862 * 214.99813 * 10 7 6 12 12 O 1.42098 * 106.40712 * 311.45674 * 11 10 7 13 13 O 1.42111 * 106.40010 * 178.53962 * 11 10 7 14 14 C 1.76200 * 107.21871 * 65.00567 * 11 10 7 15 15 C 1.38629 * 119.75192 * 89.99881 * 14 11 10 16 16 C 1.37624 * 120.24653 * 180.23254 * 15 14 11 17 17 C 1.40716 * 119.74224 * 359.52057 * 16 15 14 18 18 C 1.41396 * 120.23809 * 180.23246 * 17 16 15 19 19 H 1.08004 * 119.99614 * 155.44655 * 18 17 16 20 20 C 1.39940 * 120.00247 * 335.43838 * 18 17 16 21 21 N 1.30823 * 120.00151 * 342.11422 * 20 18 17 22 22 Si 1.86806 * 119.99767 * 162.10433 * 20 18 17 23 23 H 1.48496 * 109.46866 * 94.67188 * 22 20 18 24 24 H 1.48498 * 109.46883 * 214.66477 * 22 20 18 25 25 H 1.48493 * 109.47470 * 334.66957 * 22 20 18 26 26 C 1.40712 * 119.51327 * 0.46996 * 17 16 15 27 27 C 1.37612 * 119.74657 * 359.76314 * 26 17 16 28 28 N 1.31817 * 121.75033 * 0.27660 * 6 5 4 29 29 H 1.09000 * 109.47287 * 89.99538 * 1 2 3 30 30 H 1.08997 * 109.46942 * 209.99601 * 1 2 3 31 31 H 1.08997 * 109.47085 * 329.99756 * 1 2 3 32 32 H 1.07999 * 120.80060 * 359.97438 * 3 2 1 33 33 H 1.07993 * 120.44738 * 180.02562 * 4 3 2 34 34 H 1.08998 * 109.46821 * 179.97438 * 9 7 6 35 35 H 1.08995 * 109.46887 * 300.00170 * 9 7 6 36 36 H 1.09001 * 109.46573 * 60.00480 * 9 7 6 37 37 H 0.97003 * 119.99994 * 35.00067 * 10 7 6 38 38 H 1.07999 * 119.87639 * 359.95142 * 15 14 11 39 39 H 1.07997 * 120.12681 * 179.71511 * 16 15 14 40 40 H 0.97002 * 120.00064 * 180.02562 * 21 20 18 41 41 H 1.08001 * 120.12762 * 179.73183 * 26 17 16 42 42 H 1.08003 * 119.88187 * 179.97438 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2094 1.1950 0.0000 4 6 3.5943 1.1456 -0.0005 5 7 4.1963 -0.0331 -0.0016 6 6 3.4956 -1.1492 -0.0015 7 6 4.2205 -2.4703 -0.0021 8 1 3.5250 -3.2663 -0.2681 9 6 4.7938 -2.7382 1.3909 10 7 5.3113 -2.4284 -0.9793 11 16 5.7078 -3.7886 -1.8364 12 8 5.8165 -4.8424 -0.8894 13 8 6.7646 -3.4178 -2.7112 14 6 4.3285 -4.1802 -2.8606 15 6 4.2466 -3.6472 -4.1377 16 6 3.1715 -3.9424 -4.9445 17 6 2.1582 -4.7970 -4.4722 18 6 1.0514 -5.1113 -5.2941 19 1 0.5001 -6.0256 -5.1310 20 6 0.6702 -4.2376 -6.3187 21 7 1.0857 -2.9972 -6.3091 22 14 -0.4319 -4.8428 -7.7003 23 1 -1.8470 -4.5283 -7.3784 24 1 -0.0513 -4.1696 -8.9680 25 1 -0.2736 -6.3114 -7.8527 26 6 2.2519 -5.3323 -3.1743 27 6 3.3336 -5.0195 -2.3832 28 7 2.1775 -1.1407 -0.0059 29 1 -0.3634 0.0001 -1.0276 30 1 -0.3633 -0.8900 0.5138 31 1 -0.3633 0.8899 0.5139 32 1 1.6899 2.1419 -0.0004 33 1 4.1745 2.0564 -0.0001 34 1 5.3177 -3.6940 1.3906 35 1 5.4893 -1.9422 1.6568 36 1 3.9822 -2.7694 2.1179 37 1 5.8013 -1.6038 -1.1241 38 1 5.0272 -2.9942 -4.4992 39 1 3.1074 -3.5225 -5.9374 40 1 0.8212 -2.3915 -7.0191 41 1 1.4777 -5.9857 -2.8002 42 1 3.4076 -5.4288 -1.3865 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001647303084.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:09:39 Heat of formation + Delta-G solvation = -19.991037 kcal Electronic energy + Delta-G solvation = -28123.846252 eV Core-core repulsion = 24195.219278 eV Total energy + Delta-G solvation = -3928.626974 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.109 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.16300 -37.56102 -36.68895 -36.13916 -35.09863 -34.28269 -34.02663 -32.31564 -30.24295 -29.49442 -29.43265 -28.55763 -25.81067 -24.89660 -23.35339 -21.49122 -21.36704 -21.05591 -18.98712 -17.77824 -17.58378 -17.21586 -16.68563 -16.29917 -15.78566 -15.45260 -15.17759 -14.95446 -14.37773 -14.12744 -13.61411 -13.55180 -13.38899 -13.25000 -13.19650 -12.86779 -12.45962 -12.39918 -12.21067 -12.16880 -11.79269 -11.49841 -11.43253 -11.35964 -11.31051 -11.24677 -11.18265 -10.88390 -10.74946 -10.55895 -10.41618 -9.81512 -9.67989 -9.49797 -9.48534 -9.25963 -9.10100 -7.93882 -7.67844 -7.13634 -4.78671 0.79948 1.04828 1.29164 2.26855 2.87164 2.89395 2.94680 2.96329 3.53596 3.66645 3.73166 3.80670 4.11561 4.26283 4.39771 4.57542 4.84168 4.98744 5.05794 5.12443 5.27261 5.32678 5.38584 5.41734 5.44822 5.60361 5.69608 5.82459 5.89096 6.07682 6.13729 6.23677 6.30472 6.38960 6.69453 6.72440 6.93666 6.99841 7.06303 7.33790 7.37258 7.45181 7.65230 7.78679 7.98304 8.09517 8.33418 8.52767 8.66895 9.77834 Molecular weight = 347.11amu Principal moments of inertia in cm(-1) A = 0.009260 B = 0.004247 C = 0.003257 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3023.165132 B = 6591.192577 C = 8593.740656 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C 0.180 3.820 3 C -0.236 4.236 4 C 0.150 3.850 5 N -0.515 5.515 6 C 0.328 3.672 7 C 0.228 3.772 8 H 0.113 0.887 9 C -0.163 4.163 10 N -1.114 6.114 11 S 2.692 3.308 12 O -0.981 6.981 13 O -0.982 6.982 14 C -0.788 4.788 15 C -0.014 4.014 16 C -0.183 4.183 17 C 0.141 3.859 18 C -0.435 4.435 19 H 0.088 0.912 20 C 0.073 3.927 21 N -0.767 5.767 22 Si 0.915 3.085 23 H -0.266 1.266 24 H -0.271 1.271 25 H -0.256 1.256 26 C -0.235 4.235 27 C 0.000 4.000 28 N -0.506 5.506 29 H 0.089 0.911 30 H 0.084 0.916 31 H 0.078 0.922 32 H 0.145 0.855 33 H 0.168 0.832 34 H 0.085 0.915 35 H 0.066 0.934 36 H 0.064 0.936 37 H 0.417 0.583 38 H 0.102 0.898 39 H 0.121 0.879 40 H 0.288 0.712 41 H 0.101 0.899 42 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.647 9.269 10.143 13.839 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.034 3.966 3 C -0.258 4.258 4 C -0.015 4.015 5 N -0.230 5.230 6 C 0.059 3.941 7 C 0.118 3.882 8 H 0.130 0.870 9 C -0.223 4.223 10 N -0.870 5.870 11 S 2.790 3.210 12 O -0.971 6.971 13 O -0.972 6.972 14 C -0.884 4.884 15 C -0.034 4.034 16 C -0.204 4.204 17 C 0.137 3.863 18 C -0.463 4.463 19 H 0.106 0.894 20 C -0.149 4.149 21 N -0.389 5.389 22 Si 0.739 3.261 23 H -0.191 1.191 24 H -0.196 1.196 25 H -0.179 1.179 26 C -0.256 4.256 27 C -0.020 4.020 28 N -0.220 5.220 29 H 0.107 0.893 30 H 0.103 0.897 31 H 0.097 0.903 32 H 0.163 0.837 33 H 0.185 0.815 34 H 0.104 0.896 35 H 0.085 0.915 36 H 0.083 0.917 37 H 0.251 0.749 38 H 0.120 0.880 39 H 0.139 0.861 40 H 0.099 0.901 41 H 0.119 0.881 42 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -0.450 8.041 10.142 12.950 hybrid contribution -1.565 1.433 -1.129 2.404 sum -2.015 9.474 9.013 13.230 Atomic orbital electron populations 1.20812 0.87760 1.03873 1.04120 1.21782 0.97732 0.88111 0.89004 1.22733 0.96683 1.00433 1.05946 1.23194 0.92159 0.96082 0.90099 1.68057 1.41820 0.98676 1.14430 1.23218 0.86621 0.94456 0.89799 1.19227 0.87335 0.91176 0.90424 0.86972 1.22295 1.01731 1.03876 0.94410 1.55855 1.46082 1.30717 1.54354 1.01342 0.74472 0.72168 0.72986 1.93484 1.86951 1.54106 1.62560 1.93500 1.54457 1.83300 1.65982 1.29159 1.23910 1.23642 1.11659 1.20239 0.96195 0.95049 0.91949 1.21316 0.94020 1.04640 1.00383 1.17845 0.90870 0.87568 0.90020 1.19936 1.10572 1.05356 1.10415 0.89419 1.26129 0.96206 0.94019 0.98552 1.69830 1.34826 1.03997 1.30286 0.86163 0.79817 0.80743 0.79424 1.19125 1.19612 1.17943 1.21038 0.99873 1.09185 0.95456 1.20180 0.91806 0.92675 0.97347 1.68106 1.09388 1.30570 1.13977 0.89284 0.89725 0.90284 0.83674 0.81494 0.89647 0.91530 0.91667 0.74890 0.88023 0.86085 0.90091 0.88135 0.87676 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.03 10.22 36.00 0.37 -0.66 16 2 C 0.18 2.30 6.82 -82.24 -0.56 1.73 16 3 C -0.24 -2.45 9.86 -39.31 -0.39 -2.83 16 4 C 0.15 1.66 11.30 -17.20 -0.19 1.47 16 5 N -0.52 -7.29 9.65 -10.73 -0.10 -7.39 16 6 C 0.33 5.16 6.59 -157.19 -1.04 4.12 16 7 C 0.23 3.62 3.17 -69.08 -0.22 3.40 16 8 H 0.11 1.88 7.19 -51.93 -0.37 1.51 16 9 C -0.16 -2.18 9.50 37.16 0.35 -1.83 16 10 N -1.11 -18.58 5.46 -5.88 -0.03 -18.61 16 11 S 2.69 53.49 5.64 -107.50 -0.61 52.89 16 12 O -0.98 -20.47 16.52 -57.17 -0.94 -21.42 16 13 O -0.98 -21.64 17.26 -57.17 -0.99 -22.63 16 14 C -0.79 -17.77 5.84 -39.29 -0.23 -18.00 16 15 C -0.01 -0.34 9.49 -39.66 -0.38 -0.71 16 16 C -0.18 -4.69 8.70 -38.87 -0.34 -5.02 16 17 C 0.14 3.61 5.57 -106.83 -0.60 3.01 16 18 C -0.44 -10.77 9.05 -37.74 -0.34 -11.11 16 19 H 0.09 2.05 7.91 -52.48 -0.42 1.63 16 20 C 0.07 1.69 5.14 -17.34 -0.09 1.60 16 21 N -0.77 -18.41 10.97 55.55 0.61 -17.80 16 22 Si 0.92 17.10 29.60 -169.99 -5.03 12.07 16 23 H -0.27 -4.88 7.11 56.52 0.40 -4.48 16 24 H -0.27 -4.97 7.11 56.52 0.40 -4.57 16 25 H -0.26 -4.76 7.11 56.52 0.40 -4.36 16 26 C -0.23 -5.60 9.80 -38.88 -0.38 -5.98 16 27 C 0.00 0.00 8.86 -39.66 -0.35 -0.35 16 28 N -0.51 -8.01 10.26 -6.99 -0.07 -8.08 16 29 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 30 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 31 H 0.08 0.51 8.10 -51.93 -0.42 0.09 16 32 H 0.15 0.99 8.06 -52.49 -0.42 0.56 16 33 H 0.17 1.21 8.06 -52.49 -0.42 0.79 16 34 H 0.08 1.17 7.64 -51.93 -0.40 0.78 16 35 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 36 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 37 H 0.42 6.39 8.27 -34.47 -0.29 6.11 16 38 H 0.10 2.29 7.60 -52.49 -0.40 1.89 16 39 H 0.12 3.13 6.17 -52.49 -0.32 2.81 16 40 H 0.29 6.19 8.30 -40.82 -0.34 5.85 16 41 H 0.10 2.20 8.06 -52.49 -0.42 1.78 16 42 H 0.11 2.11 7.60 -52.48 -0.40 1.71 16 LS Contribution 372.10 15.07 5.61 5.61 Total: -1.00 -31.79 372.10 -11.05 -42.83 By element: Atomic # 1 Polarization: 18.80 SS G_CDS: -5.11 Total: 13.70 kcal Atomic # 6 Polarization: -26.78 SS G_CDS: -4.38 Total: -31.17 kcal Atomic # 7 Polarization: -52.28 SS G_CDS: 0.40 Total: -51.88 kcal Atomic # 8 Polarization: -42.12 SS G_CDS: -1.93 Total: -44.05 kcal Atomic # 14 Polarization: 17.10 SS G_CDS: -5.03 Total: 12.07 kcal Atomic # 16 Polarization: 53.49 SS G_CDS: -0.61 Total: 52.89 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -31.79 -11.05 -42.83 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001647303084.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.844 kcal (2) G-P(sol) polarization free energy of solvation -31.789 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.945 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.046 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.835 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.991 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds