Wall clock time and date at job start Wed Apr 1 2020 05:09:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38621 * 120.44770 * 2 1 4 4 C 1.38579 * 118.40126 * 180.02562 * 3 2 1 5 5 N 1.32345 * 119.10218 * 0.02562 * 4 3 2 6 6 C 1.31782 * 120.82463 * 359.97438 * 5 4 3 7 7 C 1.50693 * 119.12759 * 180.02562 * 6 5 4 8 8 H 1.09002 * 109.47365 * 195.00341 * 7 6 5 9 9 C 1.53003 * 109.47181 * 74.99769 * 7 6 5 10 10 N 1.46506 * 109.47005 * 315.00022 * 7 6 5 11 11 S 1.65596 * 119.99862 * 214.99813 * 10 7 6 12 12 O 1.42098 * 106.40712 * 311.45674 * 11 10 7 13 13 O 1.42111 * 106.40010 * 178.53962 * 11 10 7 14 14 C 1.76200 * 107.21871 * 65.00567 * 11 10 7 15 15 C 1.38629 * 119.75192 * 89.99881 * 14 11 10 16 16 C 1.37624 * 120.24653 * 180.23254 * 15 14 11 17 17 C 1.40716 * 119.74224 * 359.52057 * 16 15 14 18 18 C 1.41396 * 120.23809 * 180.23246 * 17 16 15 19 19 H 1.08004 * 119.99614 * 155.44655 * 18 17 16 20 20 C 1.39940 * 120.00247 * 335.43838 * 18 17 16 21 21 N 1.30823 * 120.00151 * 342.11422 * 20 18 17 22 22 Si 1.86806 * 119.99767 * 162.10433 * 20 18 17 23 23 H 1.48496 * 109.46866 * 94.67188 * 22 20 18 24 24 H 1.48498 * 109.46883 * 214.66477 * 22 20 18 25 25 H 1.48493 * 109.47470 * 334.66957 * 22 20 18 26 26 C 1.40712 * 119.51327 * 0.46996 * 17 16 15 27 27 C 1.37612 * 119.74657 * 359.76314 * 26 17 16 28 28 N 1.31817 * 121.75033 * 0.27660 * 6 5 4 29 29 H 1.09000 * 109.47287 * 89.99538 * 1 2 3 30 30 H 1.08997 * 109.46942 * 209.99601 * 1 2 3 31 31 H 1.08997 * 109.47085 * 329.99756 * 1 2 3 32 32 H 1.07999 * 120.80060 * 359.97438 * 3 2 1 33 33 H 1.07993 * 120.44738 * 180.02562 * 4 3 2 34 34 H 1.08998 * 109.46821 * 179.97438 * 9 7 6 35 35 H 1.08995 * 109.46887 * 300.00170 * 9 7 6 36 36 H 1.09001 * 109.46573 * 60.00480 * 9 7 6 37 37 H 0.97003 * 119.99994 * 35.00067 * 10 7 6 38 38 H 1.07999 * 119.87639 * 359.95142 * 15 14 11 39 39 H 1.07997 * 120.12681 * 179.71511 * 16 15 14 40 40 H 0.97002 * 120.00064 * 180.02562 * 21 20 18 41 41 H 1.08001 * 120.12762 * 179.73183 * 26 17 16 42 42 H 1.08003 * 119.88187 * 179.97438 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2094 1.1950 0.0000 4 6 3.5943 1.1456 -0.0005 5 7 4.1963 -0.0331 -0.0016 6 6 3.4956 -1.1492 -0.0015 7 6 4.2205 -2.4703 -0.0021 8 1 3.5250 -3.2663 -0.2681 9 6 4.7938 -2.7382 1.3909 10 7 5.3113 -2.4284 -0.9793 11 16 5.7078 -3.7886 -1.8364 12 8 5.8165 -4.8424 -0.8894 13 8 6.7646 -3.4178 -2.7112 14 6 4.3285 -4.1802 -2.8606 15 6 4.2466 -3.6472 -4.1377 16 6 3.1715 -3.9424 -4.9445 17 6 2.1582 -4.7970 -4.4722 18 6 1.0514 -5.1113 -5.2941 19 1 0.5001 -6.0256 -5.1310 20 6 0.6702 -4.2376 -6.3187 21 7 1.0857 -2.9972 -6.3091 22 14 -0.4319 -4.8428 -7.7003 23 1 -1.8470 -4.5283 -7.3784 24 1 -0.0513 -4.1696 -8.9680 25 1 -0.2736 -6.3114 -7.8527 26 6 2.2519 -5.3323 -3.1743 27 6 3.3336 -5.0195 -2.3832 28 7 2.1775 -1.1407 -0.0059 29 1 -0.3634 0.0001 -1.0276 30 1 -0.3633 -0.8900 0.5138 31 1 -0.3633 0.8899 0.5139 32 1 1.6899 2.1419 -0.0004 33 1 4.1745 2.0564 -0.0001 34 1 5.3177 -3.6940 1.3906 35 1 5.4893 -1.9422 1.6568 36 1 3.9822 -2.7694 2.1179 37 1 5.8013 -1.6038 -1.1241 38 1 5.0272 -2.9942 -4.4992 39 1 3.1074 -3.5225 -5.9374 40 1 0.8212 -2.3915 -7.0191 41 1 1.4777 -5.9857 -2.8002 42 1 3.4076 -5.4288 -1.3865 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001647303084.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:09:38 Heat of formation + Delta-G solvation = -41.397525 kcal Electronic energy + Delta-G solvation = -28124.774507 eV Core-core repulsion = 24195.219278 eV Total energy + Delta-G solvation = -3929.555229 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.109 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.13146 -39.40703 -38.26318 -37.46978 -36.80719 -35.82673 -35.23135 -33.34346 -32.09295 -31.32553 -30.66078 -29.39039 -27.64755 -25.93574 -24.26614 -23.31595 -23.03296 -22.37072 -20.49618 -19.46297 -19.06524 -18.38298 -18.31427 -17.70161 -17.17574 -16.74117 -16.28395 -16.11518 -15.90627 -15.66036 -15.18169 -15.01744 -14.68575 -14.55618 -14.13063 -14.09586 -13.99920 -13.87719 -13.63003 -13.34754 -13.17573 -13.13798 -13.03682 -12.94058 -12.89730 -12.72721 -12.60887 -12.46193 -12.03345 -11.80712 -11.58575 -11.56350 -11.39625 -11.23668 -10.62921 -10.35581 -10.24580 -9.80740 -9.57095 -8.89404 -6.66749 -0.40573 -0.08839 0.14184 0.46007 1.03901 1.34078 1.40594 1.51393 2.09540 2.12987 2.46949 2.70387 2.75243 2.92957 3.18294 3.51241 3.56879 3.61898 3.82773 4.09213 4.15006 4.20435 4.25227 4.30743 4.34640 4.46359 4.62210 4.70509 4.82051 4.83291 4.84633 4.91737 5.04853 5.07613 5.13088 5.21679 5.23992 5.48818 5.50251 5.57504 5.73011 5.90581 6.05425 6.08935 6.13043 6.46607 6.66124 6.78988 7.10405 8.05885 Molecular weight = 347.11amu Principal moments of inertia in cm(-1) A = 0.009260 B = 0.004247 C = 0.003257 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3023.165132 B = 6591.192577 C = 8593.740656 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C 0.155 3.845 3 C -0.220 4.220 4 C 0.142 3.858 5 N -0.529 5.529 6 C 0.306 3.694 7 C 0.221 3.779 8 H 0.097 0.903 9 C -0.156 4.156 10 N -1.102 6.102 11 S 2.725 3.275 12 O -0.987 6.987 13 O -1.001 7.001 14 C -0.799 4.799 15 C -0.022 4.022 16 C -0.207 4.207 17 C 0.113 3.887 18 C -0.465 4.465 19 H 0.093 0.907 20 C 0.035 3.965 21 N -0.798 5.798 22 Si 0.991 3.009 23 H -0.256 1.256 24 H -0.263 1.263 25 H -0.255 1.255 26 C -0.253 4.253 27 C -0.001 4.001 28 N -0.541 5.541 29 H 0.083 0.917 30 H 0.075 0.925 31 H 0.115 0.885 32 H 0.187 0.813 33 H 0.207 0.793 34 H 0.079 0.921 35 H 0.076 0.924 36 H 0.078 0.922 37 H 0.425 0.575 38 H 0.110 0.890 39 H 0.109 0.891 40 H 0.298 0.702 41 H 0.113 0.887 42 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.395 10.919 10.828 15.563 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.009 3.991 3 C -0.241 4.241 4 C -0.023 4.023 5 N -0.245 5.245 6 C 0.037 3.963 7 C 0.112 3.888 8 H 0.114 0.886 9 C -0.216 4.216 10 N -0.861 5.861 11 S 2.820 3.180 12 O -0.977 6.977 13 O -0.992 6.992 14 C -0.892 4.892 15 C -0.043 4.043 16 C -0.228 4.228 17 C 0.109 3.891 18 C -0.492 4.492 19 H 0.111 0.889 20 C -0.184 4.184 21 N -0.420 5.420 22 Si 0.810 3.190 23 H -0.180 1.180 24 H -0.188 1.188 25 H -0.178 1.178 26 C -0.273 4.273 27 C -0.020 4.020 28 N -0.257 5.257 29 H 0.101 0.899 30 H 0.094 0.906 31 H 0.133 0.867 32 H 0.205 0.795 33 H 0.224 0.776 34 H 0.098 0.902 35 H 0.095 0.905 36 H 0.097 0.903 37 H 0.261 0.739 38 H 0.128 0.872 39 H 0.127 0.873 40 H 0.109 0.891 41 H 0.131 0.869 42 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -1.218 9.695 10.822 14.581 hybrid contribution -1.310 1.064 -1.231 2.089 sum -2.528 10.759 9.590 14.633 Atomic orbital electron populations 1.20892 0.85980 1.05285 1.04074 1.22403 0.99152 0.88329 0.89180 1.23180 0.96543 1.01213 1.03169 1.23948 0.93142 0.96299 0.88907 1.68048 1.42190 0.99268 1.14952 1.23027 0.86866 0.94711 0.91738 1.19346 0.86802 0.91589 0.91074 0.88551 1.22238 1.02258 1.03848 0.93234 1.55471 1.46559 1.30125 1.53922 1.00410 0.73028 0.72290 0.72273 1.93471 1.86725 1.55154 1.62353 1.93467 1.55008 1.83760 1.66973 1.29629 1.24656 1.23130 1.11804 1.20420 0.96038 0.95211 0.92585 1.21324 0.95128 1.05943 1.00386 1.18191 0.91542 0.88256 0.91084 1.20244 1.10941 1.06157 1.11808 0.88876 1.27029 0.97360 0.93699 1.00344 1.69864 1.35713 1.05139 1.31332 0.85049 0.77964 0.80012 0.75983 1.18012 1.18770 1.17817 1.21278 1.00968 1.09818 0.95271 1.20474 0.91291 0.92146 0.98131 1.68054 1.09752 1.32630 1.15288 0.89883 0.90574 0.86683 0.79532 0.77614 0.90166 0.90528 0.90284 0.73910 0.87231 0.87278 0.89107 0.86866 0.85375 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.85 10.22 71.23 0.73 -1.13 16 2 C 0.15 3.73 6.82 42.58 0.29 4.02 16 3 C -0.22 -3.90 9.86 22.44 0.22 -3.68 16 4 C 0.14 2.74 11.30 84.70 0.96 3.70 16 5 N -0.53 -14.21 9.65 -187.86 -1.81 -16.03 16 6 C 0.31 9.49 6.59 138.74 0.91 10.41 16 7 C 0.22 6.97 3.17 44.24 0.14 7.11 16 8 H 0.10 3.29 7.19 -2.39 -0.02 3.28 16 9 C -0.16 -4.03 9.50 71.98 0.68 -3.35 16 10 N -1.10 -36.34 5.46 -172.51 -0.94 -37.28 16 11 S 2.72 107.83 5.64 -56.49 -0.32 107.51 16 12 O -0.99 -40.57 16.52 -128.00 -2.11 -42.69 16 13 O -1.00 -43.93 17.26 -128.00 -2.21 -46.14 16 14 C -0.80 -36.64 5.84 22.46 0.13 -36.51 16 15 C -0.02 -1.11 9.49 22.22 0.21 -0.90 16 16 C -0.21 -11.06 8.70 22.73 0.20 -10.86 16 17 C 0.11 6.00 5.57 -21.29 -0.12 5.88 16 18 C -0.46 -23.59 9.05 23.46 0.21 -23.38 16 19 H 0.09 4.44 7.91 -2.91 -0.02 4.42 16 20 C 0.04 1.64 5.14 85.26 0.44 2.08 16 21 N -0.80 -39.07 10.97 21.82 0.24 -38.83 16 22 Si 0.99 34.81 29.60 68.60 2.03 36.84 16 23 H -0.26 -8.52 7.11 99.48 0.71 -7.81 16 24 H -0.26 -8.84 7.11 99.48 0.71 -8.13 16 25 H -0.25 -8.82 7.11 99.48 0.71 -8.12 16 26 C -0.25 -12.40 9.80 22.73 0.22 -12.18 16 27 C 0.00 -0.03 8.86 22.22 0.20 0.17 16 28 N -0.54 -17.10 10.26 -176.02 -1.81 -18.91 16 29 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 30 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 31 H 0.11 1.13 8.10 -2.39 -0.02 1.11 16 32 H 0.19 1.64 8.06 -2.91 -0.02 1.61 16 33 H 0.21 2.17 8.06 -2.91 -0.02 2.14 16 34 H 0.08 2.13 7.64 -2.39 -0.02 2.11 16 35 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 36 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 37 H 0.42 12.77 8.27 -96.74 -0.80 11.97 16 38 H 0.11 5.09 7.60 -2.91 -0.02 5.07 16 39 H 0.11 5.94 6.17 -2.91 -0.02 5.92 16 40 H 0.30 12.93 8.30 -92.71 -0.77 12.16 16 41 H 0.11 5.07 8.06 -2.91 -0.02 5.05 16 42 H 0.13 5.13 7.60 -2.91 -0.02 5.11 16 Total: -1.00 -70.47 372.10 -1.24 -71.71 By element: Atomic # 1 Polarization: 42.16 SS G_CDS: 0.26 Total: 42.42 kcal Atomic # 6 Polarization: -64.05 SS G_CDS: 5.43 Total: -58.62 kcal Atomic # 7 Polarization: -106.73 SS G_CDS: -4.32 Total: -111.05 kcal Atomic # 8 Polarization: -84.50 SS G_CDS: -4.32 Total: -88.83 kcal Atomic # 14 Polarization: 34.81 SS G_CDS: 2.03 Total: 36.84 kcal Atomic # 16 Polarization: 107.83 SS G_CDS: -0.32 Total: 107.51 kcal Total: -70.47 -1.24 -71.71 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001647303084.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.316 kcal (2) G-P(sol) polarization free energy of solvation -70.471 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.155 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.243 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.714 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.398 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds