Wall clock time and date at job start Wed Apr 1 2020 04:00:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30818 * 1 3 3 Si 1.86803 * 119.99936 * 2 1 4 4 H 1.48500 * 109.46998 * 274.65883 * 3 2 1 5 5 H 1.48497 * 109.47415 * 34.66406 * 3 2 1 6 6 H 1.48502 * 109.47115 * 154.66625 * 3 2 1 7 7 C 1.39944 * 120.00077 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00027 * 162.23223 * 7 2 1 9 9 C 1.41396 * 119.99796 * 342.23351 * 7 2 1 10 10 C 1.40716 * 120.24257 * 155.28773 * 9 7 2 11 11 C 1.37618 * 119.74446 * 180.02562 * 10 9 7 12 12 C 1.38632 * 120.24916 * 0.02562 * 11 10 9 13 13 S 1.76202 * 119.74950 * 179.97438 * 12 11 10 14 14 O 1.42097 * 106.40248 * 336.45644 * 13 12 11 15 15 O 1.42105 * 106.39761 * 203.53954 * 13 12 11 16 16 N 1.65596 * 107.21844 * 90.00127 * 13 12 11 17 17 C 1.46503 * 120.00416 * 64.99803 * 16 13 12 18 18 H 1.09000 * 109.52223 * 335.08941 * 17 16 13 19 19 C 1.53107 * 109.50031 * 214.99909 * 17 16 13 20 20 C 1.53288 * 109.70342 * 170.12750 * 19 17 16 21 21 N 1.46478 * 108.69156 * 50.76783 * 20 19 17 22 22 C 1.34403 * 128.44024 * 162.67549 * 21 20 19 23 23 N 1.30784 * 108.54734 * 180.19541 * 22 21 20 24 24 C 1.34426 * 109.32677 * 359.94319 * 23 22 21 25 25 C 1.33865 * 107.79432 * 359.97438 * 24 23 22 26 26 C 1.50711 * 128.68187 * 180.15375 * 25 24 23 27 27 C 1.38637 * 120.49950 * 0.25129 * 12 11 10 28 28 C 1.37616 * 120.24909 * 359.44553 * 27 12 11 29 29 H 0.97004 * 120.00170 * 0.02562 * 1 2 3 30 30 H 1.08002 * 120.12928 * 359.97438 * 10 9 7 31 31 H 1.08004 * 119.87498 * 180.02562 * 11 10 9 32 32 H 0.97002 * 119.99935 * 244.99773 * 16 13 12 33 33 H 1.09003 * 109.43687 * 50.06004 * 19 17 16 34 34 H 1.09001 * 109.39801 * 290.17746 * 19 17 16 35 35 H 1.09000 * 109.60070 * 291.01219 * 20 19 17 36 36 H 1.08997 * 109.73120 * 170.61041 * 20 19 17 37 37 H 1.07996 * 125.72384 * 0.23615 * 22 21 20 38 38 H 1.07997 * 126.10586 * 179.72542 * 24 23 22 39 39 H 1.08997 * 109.74335 * 44.58274 * 26 25 24 40 40 H 1.09002 * 109.78202 * 283.89045 * 26 25 24 41 41 H 1.08001 * 119.87206 * 179.70467 * 27 12 11 42 42 H 1.07998 * 120.13007 * 180.27592 * 28 27 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 2.3912 2.1033 -1.3955 5 1 1.4925 2.6223 0.7963 6 1 3.5856 1.4137 0.5991 7 6 2.0079 -1.2119 0.0005 8 1 3.0493 -1.2344 -0.2849 9 6 1.3515 -2.4071 0.3747 10 6 1.8217 -3.6493 -0.0899 11 6 1.1747 -4.8061 0.2803 12 6 0.0633 -4.7507 1.1072 13 16 -0.7555 -6.2400 1.5724 14 8 -0.4427 -7.1992 0.5718 15 8 -2.0867 -5.8767 1.9118 16 7 -0.0456 -6.7736 2.9700 17 6 -0.1557 -5.9805 4.1968 18 1 -0.3216 -4.9341 3.9404 19 6 1.1372 -6.1095 5.0067 20 6 1.1287 -5.0980 6.1584 21 7 -0.1335 -5.2299 6.8898 22 6 -0.4350 -4.7878 8.1227 23 7 -1.6704 -5.1209 8.3936 24 6 -2.1929 -5.7817 7.3460 25 6 -1.2500 -5.8580 6.3989 26 6 -1.3338 -6.4947 5.0355 27 6 -0.4121 -3.5320 1.5662 28 6 0.2228 -2.3630 1.2139 29 1 -0.4850 0.8401 -0.0004 30 1 2.6866 -3.6947 -0.7352 31 1 1.5340 -5.7607 -0.0747 32 1 0.4432 -7.6115 2.9765 33 1 1.9919 -5.9144 4.3590 34 1 1.2117 -7.1190 5.4112 35 1 1.2156 -4.0878 5.7585 36 1 1.9633 -5.2984 6.8303 37 1 0.2309 -4.2476 8.7792 38 1 -3.1934 -6.1832 7.2817 39 1 -2.2743 -6.2200 4.5580 40 1 -1.2719 -7.5788 5.1302 41 1 -1.2816 -3.5003 2.2061 42 1 -0.1465 -1.4150 1.5762 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001647342633.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:00:39 Heat of formation + Delta-G solvation = -5.282670 kcal Electronic energy + Delta-G solvation = -28158.400469 eV Core-core repulsion = 24230.411297 eV Total energy + Delta-G solvation = -3927.989172 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.109 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.34062 -37.74938 -37.58241 -36.51464 -35.21057 -34.17197 -34.11090 -31.65781 -30.35282 -30.11283 -29.55834 -27.22031 -25.90670 -24.32270 -22.18481 -21.59996 -21.38942 -21.19497 -19.53924 -18.81267 -17.70160 -17.39319 -17.08322 -16.63136 -16.35242 -15.58668 -15.39224 -14.58151 -14.41283 -14.21344 -14.06157 -14.05212 -13.75078 -13.48862 -13.29126 -13.15494 -12.64646 -12.45963 -12.29591 -12.23580 -11.83805 -11.61043 -11.55986 -11.53284 -11.41924 -11.38135 -11.28569 -10.95640 -10.94483 -10.52281 -10.12435 -9.84275 -9.75902 -9.57071 -9.55598 -9.22909 -8.34296 -8.04876 -7.79967 -7.21733 -4.88464 1.12954 2.03582 2.16767 2.70944 2.81370 2.82366 2.84850 2.89894 3.15546 3.52173 3.60233 4.14031 4.27373 4.37582 4.44941 4.60790 4.66122 4.75843 4.95253 4.99032 5.13923 5.17681 5.29301 5.34715 5.53389 5.53909 5.62508 5.79918 5.92171 5.98106 6.02724 6.15344 6.34132 6.59719 6.62996 6.72366 6.81552 6.96007 7.12191 7.18096 7.25442 7.33762 7.54309 7.68284 7.88542 8.04380 8.23331 8.42865 8.56107 9.69690 Molecular weight = 347.11amu Principal moments of inertia in cm(-1) A = 0.010502 B = 0.003638 C = 0.002984 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2665.596577 B = 7695.591190 C = 9379.838283 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.762 5.762 2 C 0.072 3.928 3 Si 0.916 3.084 4 H -0.265 1.265 5 H -0.271 1.271 6 H -0.256 1.256 7 C -0.434 4.434 8 H 0.088 0.912 9 C 0.140 3.860 10 C -0.239 4.239 11 C 0.003 3.997 12 C -0.790 4.790 13 S 2.690 3.310 14 O -0.984 6.984 15 O -0.979 6.979 16 N -1.120 6.120 17 C 0.158 3.842 18 H 0.095 0.905 19 C -0.139 4.139 20 C 0.104 3.896 21 N -0.457 5.457 22 C 0.180 3.820 23 N -0.498 5.498 24 C -0.026 4.026 25 C -0.014 4.014 26 C -0.065 4.065 27 C -0.018 4.018 28 C -0.182 4.182 29 H 0.290 0.710 30 H 0.100 0.900 31 H 0.104 0.896 32 H 0.411 0.589 33 H 0.100 0.900 34 H 0.078 0.922 35 H 0.093 0.907 36 H 0.095 0.905 37 H 0.203 0.797 38 H 0.169 0.831 39 H 0.103 0.897 40 H 0.086 0.914 41 H 0.102 0.898 42 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.980 -6.705 10.556 13.123 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.384 5.384 2 C -0.151 4.151 3 Si 0.739 3.261 4 H -0.190 1.190 5 H -0.195 1.195 6 H -0.180 1.180 7 C -0.461 4.461 8 H 0.106 0.894 9 C 0.136 3.864 10 C -0.259 4.259 11 C -0.017 4.017 12 C -0.886 4.886 13 S 2.789 3.211 14 O -0.975 6.975 15 O -0.969 6.969 16 N -0.874 5.874 17 C 0.049 3.951 18 H 0.113 0.887 19 C -0.179 4.179 20 C -0.019 4.019 21 N -0.141 5.141 22 C -0.102 4.102 23 N -0.217 5.217 24 C -0.173 4.173 25 C -0.129 4.129 26 C -0.105 4.105 27 C -0.039 4.039 28 C -0.203 4.203 29 H 0.102 0.898 30 H 0.118 0.882 31 H 0.122 0.878 32 H 0.244 0.756 33 H 0.118 0.882 34 H 0.097 0.903 35 H 0.111 0.889 36 H 0.114 0.886 37 H 0.220 0.780 38 H 0.186 0.814 39 H 0.121 0.879 40 H 0.105 0.895 41 H 0.120 0.880 42 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 2.666 -6.640 10.784 12.941 hybrid contribution 1.523 0.929 -0.759 1.939 sum 4.190 -5.711 10.024 12.274 Atomic orbital electron populations 1.69816 1.07953 1.30538 1.30131 1.26150 0.94884 1.02186 0.91848 0.86150 0.80737 0.79602 0.79611 1.19026 1.19525 1.17984 1.19957 0.98511 0.91227 1.36432 0.89408 1.17847 0.90046 0.92133 0.86380 1.21024 1.04377 0.92798 1.07749 1.20150 0.91801 0.97405 0.92338 1.29097 1.18585 1.15283 1.25634 1.01358 0.73776 0.74218 0.71719 1.93498 1.85479 1.61849 1.56641 1.93503 1.34998 1.84722 1.83666 1.55891 1.73367 1.33663 1.24513 1.20664 0.93909 0.95994 0.84504 0.88727 1.22184 0.99486 0.99737 0.96444 1.22015 0.84024 1.01706 0.94127 1.45478 1.11749 1.42512 1.14375 1.24746 0.95174 1.04069 0.86217 1.70479 1.07063 1.16155 1.27988 1.21823 0.99990 1.04892 0.90611 1.21132 0.88334 1.04987 0.98470 1.20831 1.00871 1.00181 0.88655 1.20258 0.95852 0.91844 0.95919 1.21335 0.99765 0.96887 1.02280 0.89831 0.88189 0.87828 0.75647 0.88154 0.90290 0.88901 0.88627 0.78038 0.81411 0.87878 0.89530 0.87970 0.86076 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -17.81 10.97 55.55 0.61 -17.20 16 2 C 0.07 1.61 5.14 -17.34 -0.09 1.52 16 3 Si 0.92 16.41 29.60 -169.99 -5.03 11.38 16 4 H -0.27 -4.73 7.11 56.52 0.40 -4.33 16 5 H -0.27 -4.76 7.11 56.52 0.40 -4.36 16 6 H -0.26 -4.53 7.11 56.52 0.40 -4.13 16 7 C -0.43 -10.23 9.05 -37.74 -0.34 -10.58 16 8 H 0.09 1.95 7.91 -52.49 -0.41 1.53 16 9 C 0.14 3.38 5.57 -106.82 -0.60 2.78 16 10 C -0.24 -5.38 9.80 -38.87 -0.38 -5.76 16 11 C 0.00 0.07 9.49 -39.66 -0.38 -0.31 16 12 C -0.79 -16.27 5.84 -39.29 -0.23 -16.50 16 13 S 2.69 47.93 5.65 -107.50 -0.61 47.32 16 14 O -0.98 -19.73 17.26 -57.17 -0.99 -20.72 16 15 O -0.98 -19.66 16.82 -57.17 -0.96 -20.62 16 16 N -1.12 -14.22 5.48 -4.63 -0.03 -14.24 16 17 C 0.16 1.88 2.67 -67.63 -0.18 1.69 16 18 H 0.09 1.30 7.22 -51.93 -0.37 0.92 16 19 C -0.14 -1.23 5.45 -26.53 -0.14 -1.38 16 20 C 0.10 0.87 7.00 -3.90 -0.03 0.84 16 21 N -0.46 -5.03 3.13 -114.08 -0.36 -5.39 16 22 C 0.18 2.04 12.66 -90.72 -1.15 0.89 16 23 N -0.50 -7.03 11.27 -14.87 -0.17 -7.19 16 24 C -0.03 -0.35 11.84 -17.95 -0.21 -0.56 16 25 C -0.01 -0.18 6.57 -81.73 -0.54 -0.71 16 26 C -0.07 -0.77 5.92 -27.63 -0.16 -0.93 16 27 C -0.02 -0.40 8.88 -39.66 -0.35 -0.76 16 28 C -0.18 -4.35 8.70 -38.87 -0.34 -4.68 16 29 H 0.29 6.09 8.30 -40.82 -0.34 5.75 16 30 H 0.10 2.07 8.06 -52.49 -0.42 1.65 16 31 H 0.10 1.97 7.60 -52.48 -0.40 1.57 16 32 H 0.41 4.10 8.84 -34.47 -0.30 3.80 16 33 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 34 H 0.08 0.61 8.11 -51.93 -0.42 0.19 16 35 H 0.09 0.79 8.14 -51.93 -0.42 0.36 16 36 H 0.10 0.55 8.14 -51.93 -0.42 0.12 16 37 H 0.20 1.50 8.06 -52.49 -0.42 1.08 16 38 H 0.17 1.92 8.06 -52.49 -0.42 1.50 16 39 H 0.10 1.35 7.95 -51.93 -0.41 0.94 16 40 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 41 H 0.10 2.09 7.59 -52.49 -0.40 1.69 16 42 H 0.12 2.95 6.18 -52.49 -0.32 2.63 16 LS Contribution 362.50 15.07 5.46 5.46 Total: -1.00 -31.53 362.50 -12.33 -43.86 By element: Atomic # 1 Polarization: 16.92 SS G_CDS: -5.14 Total: 11.77 kcal Atomic # 6 Polarization: -29.31 SS G_CDS: -5.12 Total: -34.43 kcal Atomic # 7 Polarization: -44.09 SS G_CDS: 0.06 Total: -44.03 kcal Atomic # 8 Polarization: -39.39 SS G_CDS: -1.95 Total: -41.34 kcal Atomic # 14 Polarization: 16.41 SS G_CDS: -5.03 Total: 11.38 kcal Atomic # 16 Polarization: 47.93 SS G_CDS: -0.61 Total: 47.32 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -31.53 -12.33 -43.86 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001647342633.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.578 kcal (2) G-P(sol) polarization free energy of solvation -31.535 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.043 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.326 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.861 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.283 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds