Wall clock time and date at job start Wed Apr 1 2020 04:00:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30818 * 1 3 3 Si 1.86803 * 119.99936 * 2 1 4 4 H 1.48500 * 109.46998 * 274.65883 * 3 2 1 5 5 H 1.48497 * 109.47415 * 34.66406 * 3 2 1 6 6 H 1.48502 * 109.47115 * 154.66625 * 3 2 1 7 7 C 1.39944 * 120.00077 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00027 * 162.23223 * 7 2 1 9 9 C 1.41396 * 119.99796 * 342.23351 * 7 2 1 10 10 C 1.40716 * 120.24257 * 155.28773 * 9 7 2 11 11 C 1.37618 * 119.74446 * 180.02562 * 10 9 7 12 12 C 1.38632 * 120.24916 * 0.02562 * 11 10 9 13 13 S 1.76202 * 119.74950 * 179.97438 * 12 11 10 14 14 O 1.42097 * 106.40248 * 336.45644 * 13 12 11 15 15 O 1.42105 * 106.39761 * 203.53954 * 13 12 11 16 16 N 1.65596 * 107.21844 * 90.00127 * 13 12 11 17 17 C 1.46503 * 120.00416 * 64.99803 * 16 13 12 18 18 H 1.09000 * 109.52223 * 335.08941 * 17 16 13 19 19 C 1.53107 * 109.50031 * 214.99909 * 17 16 13 20 20 C 1.53288 * 109.70342 * 170.12750 * 19 17 16 21 21 N 1.46478 * 108.69156 * 50.76783 * 20 19 17 22 22 C 1.34403 * 128.44024 * 162.67549 * 21 20 19 23 23 N 1.30784 * 108.54734 * 180.19541 * 22 21 20 24 24 C 1.34426 * 109.32677 * 359.94319 * 23 22 21 25 25 C 1.33865 * 107.79432 * 359.97438 * 24 23 22 26 26 C 1.50711 * 128.68187 * 180.15375 * 25 24 23 27 27 C 1.38637 * 120.49950 * 0.25129 * 12 11 10 28 28 C 1.37616 * 120.24909 * 359.44553 * 27 12 11 29 29 H 0.97004 * 120.00170 * 0.02562 * 1 2 3 30 30 H 1.08002 * 120.12928 * 359.97438 * 10 9 7 31 31 H 1.08004 * 119.87498 * 180.02562 * 11 10 9 32 32 H 0.97002 * 119.99935 * 244.99773 * 16 13 12 33 33 H 1.09003 * 109.43687 * 50.06004 * 19 17 16 34 34 H 1.09001 * 109.39801 * 290.17746 * 19 17 16 35 35 H 1.09000 * 109.60070 * 291.01219 * 20 19 17 36 36 H 1.08997 * 109.73120 * 170.61041 * 20 19 17 37 37 H 1.07996 * 125.72384 * 0.23615 * 22 21 20 38 38 H 1.07997 * 126.10586 * 179.72542 * 24 23 22 39 39 H 1.08997 * 109.74335 * 44.58274 * 26 25 24 40 40 H 1.09002 * 109.78202 * 283.89045 * 26 25 24 41 41 H 1.08001 * 119.87206 * 179.70467 * 27 12 11 42 42 H 1.07998 * 120.13007 * 180.27592 * 28 27 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 2.3912 2.1033 -1.3955 5 1 1.4925 2.6223 0.7963 6 1 3.5856 1.4137 0.5991 7 6 2.0079 -1.2119 0.0005 8 1 3.0493 -1.2344 -0.2849 9 6 1.3515 -2.4071 0.3747 10 6 1.8217 -3.6493 -0.0899 11 6 1.1747 -4.8061 0.2803 12 6 0.0633 -4.7507 1.1072 13 16 -0.7555 -6.2400 1.5724 14 8 -0.4427 -7.1992 0.5718 15 8 -2.0867 -5.8767 1.9118 16 7 -0.0456 -6.7736 2.9700 17 6 -0.1557 -5.9805 4.1968 18 1 -0.3216 -4.9341 3.9404 19 6 1.1372 -6.1095 5.0067 20 6 1.1287 -5.0980 6.1584 21 7 -0.1335 -5.2299 6.8898 22 6 -0.4350 -4.7878 8.1227 23 7 -1.6704 -5.1209 8.3936 24 6 -2.1929 -5.7817 7.3460 25 6 -1.2500 -5.8580 6.3989 26 6 -1.3338 -6.4947 5.0355 27 6 -0.4121 -3.5320 1.5662 28 6 0.2228 -2.3630 1.2139 29 1 -0.4850 0.8401 -0.0004 30 1 2.6866 -3.6947 -0.7352 31 1 1.5340 -5.7607 -0.0747 32 1 0.4432 -7.6115 2.9765 33 1 1.9919 -5.9144 4.3590 34 1 1.2117 -7.1190 5.4112 35 1 1.2156 -4.0878 5.7585 36 1 1.9633 -5.2984 6.8303 37 1 0.2309 -4.2476 8.7792 38 1 -3.1934 -6.1832 7.2817 39 1 -2.2743 -6.2200 4.5580 40 1 -1.2719 -7.5788 5.1302 41 1 -1.2816 -3.5003 2.2061 42 1 -0.1465 -1.4150 1.5762 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001647342633.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:00:38 Heat of formation + Delta-G solvation = -24.749410 kcal Electronic energy + Delta-G solvation = -28159.244610 eV Core-core repulsion = 24230.411297 eV Total energy + Delta-G solvation = -3928.833313 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.109 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -43.22044 -39.40178 -38.65331 -38.02206 -36.78368 -35.81710 -35.08296 -32.64172 -32.08250 -31.30080 -30.97492 -28.15044 -27.63192 -25.13464 -23.37030 -23.09748 -22.87444 -22.28728 -20.65467 -19.99875 -19.42792 -18.64758 -18.19616 -18.01478 -17.39074 -17.20636 -16.47390 -15.90293 -15.80852 -15.38690 -15.14407 -15.03114 -14.93091 -14.86595 -14.61246 -14.12769 -14.02334 -13.99181 -13.61869 -13.56369 -13.15317 -13.07831 -13.01969 -12.95706 -12.87023 -12.64055 -12.56279 -12.37795 -12.02784 -11.93559 -11.55315 -11.38044 -11.21616 -11.02466 -10.47900 -10.37639 -9.79623 -9.55732 -9.27206 -8.88476 -6.66003 -0.33333 0.47613 1.04867 1.14845 1.35344 1.41086 1.52185 1.92366 2.09890 2.18285 2.22669 2.51292 2.91923 3.46969 3.53840 3.56800 3.65453 3.75468 3.82391 3.98532 4.11485 4.26386 4.29415 4.33363 4.40940 4.49480 4.62195 4.74743 4.84892 4.86835 4.92608 4.94528 5.03607 5.08854 5.21194 5.23553 5.43942 5.51560 5.59146 5.75596 5.79999 5.92539 6.14613 6.18780 6.36486 6.48553 6.67748 6.80236 7.13868 8.06517 Molecular weight = 347.11amu Principal moments of inertia in cm(-1) A = 0.010502 B = 0.003638 C = 0.002984 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2665.596577 B = 7695.591190 C = 9379.838283 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.800 5.800 2 C 0.035 3.965 3 Si 0.990 3.010 4 H -0.261 1.261 5 H -0.265 1.265 6 H -0.251 1.251 7 C -0.466 4.466 8 H 0.094 0.906 9 C 0.114 3.886 10 C -0.255 4.255 11 C 0.001 3.999 12 C -0.795 4.795 13 S 2.723 3.277 14 O -1.001 7.001 15 O -1.001 7.001 16 N -1.099 6.099 17 C 0.152 3.848 18 H 0.074 0.926 19 C -0.134 4.134 20 C 0.100 3.900 21 N -0.456 5.456 22 C 0.185 3.815 23 N -0.538 5.538 24 C -0.049 4.049 25 C -0.023 4.023 26 C -0.061 4.061 27 C -0.020 4.020 28 C -0.206 4.206 29 H 0.298 0.702 30 H 0.111 0.889 31 H 0.127 0.873 32 H 0.428 0.572 33 H 0.111 0.889 34 H 0.098 0.902 35 H 0.090 0.910 36 H 0.132 0.868 37 H 0.238 0.762 38 H 0.173 0.827 39 H 0.084 0.916 40 H 0.106 0.894 41 H 0.109 0.891 42 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.817 -7.387 11.529 14.877 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.423 5.423 2 C -0.184 4.184 3 Si 0.809 3.191 4 H -0.185 1.185 5 H -0.189 1.189 6 H -0.174 1.174 7 C -0.492 4.492 8 H 0.112 0.888 9 C 0.110 3.890 10 C -0.275 4.275 11 C -0.019 4.019 12 C -0.888 4.888 13 S 2.818 3.182 14 O -0.992 6.992 15 O -0.991 6.991 16 N -0.858 5.858 17 C 0.044 3.956 18 H 0.092 0.908 19 C -0.173 4.173 20 C -0.021 4.021 21 N -0.140 5.140 22 C -0.098 4.098 23 N -0.257 5.257 24 C -0.195 4.195 25 C -0.139 4.139 26 C -0.102 4.102 27 C -0.040 4.040 28 C -0.226 4.226 29 H 0.109 0.891 30 H 0.130 0.870 31 H 0.145 0.855 32 H 0.266 0.734 33 H 0.129 0.871 34 H 0.117 0.883 35 H 0.108 0.892 36 H 0.150 0.850 37 H 0.254 0.746 38 H 0.191 0.809 39 H 0.103 0.897 40 H 0.124 0.876 41 H 0.127 0.873 42 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 4.530 -7.321 11.726 14.547 hybrid contribution 0.889 1.001 -0.996 1.668 sum 5.419 -6.320 10.731 13.582 Atomic orbital electron populations 1.69863 1.09511 1.31848 1.31045 1.27015 0.95471 1.05275 0.90671 0.85066 0.79369 0.74980 0.79713 1.18521 1.18932 1.17392 1.20246 0.99019 0.92081 1.37884 0.88840 1.18174 0.90560 0.93285 0.86965 1.21256 1.05194 0.92836 1.08255 1.20448 0.91618 0.97978 0.91865 1.29594 1.17987 1.16377 1.24832 1.00384 0.72977 0.72782 0.72019 1.93471 1.85624 1.61711 1.58391 1.93481 1.36505 1.84923 1.84172 1.55305 1.73162 1.34257 1.23091 1.20807 0.96017 0.94623 0.84187 0.90828 1.22178 0.97667 1.01114 0.96298 1.22269 0.83889 1.01485 0.94495 1.45654 1.12163 1.41817 1.14356 1.25451 0.94835 1.02946 0.86535 1.70450 1.08716 1.17577 1.28919 1.22075 1.00753 1.05595 0.91122 1.21178 0.88868 1.05388 0.98423 1.20773 0.99870 1.01309 0.88201 1.20394 0.95835 0.91991 0.95748 1.21323 1.00787 0.97000 1.03476 0.89115 0.87046 0.85508 0.73440 0.87101 0.88338 0.89172 0.85049 0.74567 0.80937 0.89739 0.87600 0.87270 0.87508 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -38.40 10.97 21.83 0.24 -38.16 16 2 C 0.04 1.58 5.14 85.26 0.44 2.02 16 3 Si 0.99 33.51 29.60 68.60 2.03 35.54 16 4 H -0.26 -8.57 7.11 99.48 0.71 -7.87 16 5 H -0.27 -8.64 7.11 99.48 0.71 -7.93 16 6 H -0.25 -8.17 7.11 99.48 0.71 -7.46 16 7 C -0.47 -22.40 9.05 23.46 0.21 -22.19 16 8 H 0.09 4.21 7.91 -2.91 -0.02 4.18 16 9 C 0.11 5.64 5.57 -21.29 -0.12 5.52 16 10 C -0.26 -11.53 9.80 22.73 0.22 -11.31 16 11 C 0.00 0.03 9.49 22.22 0.21 0.24 16 12 C -0.79 -32.40 5.84 22.46 0.13 -32.27 16 13 S 2.72 93.63 5.65 -56.49 -0.32 93.31 16 14 O -1.00 -38.35 17.26 -128.00 -2.21 -40.56 16 15 O -1.00 -39.69 16.82 -128.00 -2.15 -41.84 16 16 N -1.10 -25.46 5.48 -168.56 -0.92 -26.38 16 17 C 0.15 3.34 2.67 45.19 0.12 3.46 16 18 H 0.07 1.97 7.22 -2.39 -0.02 1.95 16 19 C -0.13 -1.94 5.45 30.73 0.17 -1.77 16 20 C 0.10 1.37 7.00 86.48 0.61 1.98 16 21 N -0.46 -9.09 3.13 -514.84 -1.61 -10.71 16 22 C 0.18 3.82 12.66 180.38 2.28 6.11 16 23 N -0.54 -14.79 11.27 -200.97 -2.26 -17.05 16 24 C -0.05 -1.30 11.84 83.30 0.99 -0.31 16 25 C -0.02 -0.54 6.57 40.73 0.27 -0.28 16 26 C -0.06 -1.37 5.92 30.01 0.18 -1.19 16 27 C -0.02 -0.88 8.88 22.22 0.20 -0.68 16 28 C -0.21 -10.13 8.70 22.73 0.20 -9.93 16 29 H 0.30 12.77 8.30 -92.71 -0.77 12.01 16 30 H 0.11 4.62 8.06 -2.91 -0.02 4.60 16 31 H 0.13 4.58 7.60 -2.91 -0.02 4.56 16 32 H 0.43 7.18 8.84 -96.75 -0.86 6.32 16 33 H 0.11 1.44 8.14 -2.39 -0.02 1.42 16 34 H 0.10 1.10 8.11 -2.39 -0.02 1.08 16 35 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 36 H 0.13 0.92 8.14 -2.39 -0.02 0.90 16 37 H 0.24 2.80 8.06 -2.91 -0.02 2.78 16 38 H 0.17 4.06 8.06 -2.91 -0.02 4.03 16 39 H 0.08 2.20 7.95 -2.39 -0.02 2.18 16 40 H 0.11 1.91 8.14 -2.39 -0.02 1.90 16 41 H 0.11 4.59 7.59 -2.91 -0.02 4.57 16 42 H 0.11 5.47 6.18 -2.91 -0.02 5.45 16 Total: -1.00 -69.59 362.50 -0.90 -70.49 By element: Atomic # 1 Polarization: 35.77 SS G_CDS: 0.21 Total: 35.98 kcal Atomic # 6 Polarization: -66.72 SS G_CDS: 6.10 Total: -60.62 kcal Atomic # 7 Polarization: -87.74 SS G_CDS: -4.56 Total: -92.30 kcal Atomic # 8 Polarization: -78.04 SS G_CDS: -4.36 Total: -82.40 kcal Atomic # 14 Polarization: 33.51 SS G_CDS: 2.03 Total: 35.54 kcal Atomic # 16 Polarization: 93.63 SS G_CDS: -0.32 Total: 93.31 kcal Total: -69.59 -0.90 -70.49 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001647342633.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.740 kcal (2) G-P(sol) polarization free energy of solvation -69.586 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.846 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.904 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.490 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.749 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds