Wall clock time and date at job start Wed Apr 1 2020 04:47:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86795 * 120.00229 * 2 1 4 4 H 1.48501 * 109.47213 * 239.99870 * 3 2 1 5 5 H 1.48502 * 109.47317 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47081 * 119.99498 * 3 2 1 7 7 C 1.38811 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00195 * 180.02562 * 7 2 1 9 9 N 1.36943 * 120.00012 * 0.02562 * 7 2 1 10 10 C 1.46498 * 119.99752 * 180.27737 * 9 7 2 11 11 C 1.50700 * 109.46769 * 179.72432 * 10 9 7 12 12 N 1.28679 * 124.92989 * 89.69957 * 11 10 9 13 13 C 1.32435 * 117.82709 * 179.83756 * 12 11 10 14 14 C 1.34630 * 113.30082 * 0.34908 * 13 12 11 15 15 S 1.70903 * 124.92495 * 269.99280 * 11 10 9 16 16 C 1.50984 * 125.55646 * 180.02562 * 14 13 12 17 17 C 1.53296 * 108.95920 * 342.31976 * 16 14 13 18 18 N 1.47070 * 108.59454 * 45.03996 * 17 16 14 19 19 C 1.34782 * 120.80306 * 115.25203 * 18 17 16 20 20 O 1.21277 * 119.99768 * 359.97438 * 19 18 17 21 21 C 1.50704 * 120.00002 * 180.02562 * 19 18 17 22 22 C 1.50702 * 109.47043 * 180.02562 * 21 19 18 23 23 C 1.41383 * 126.57654 * 269.71207 * 22 21 19 24 24 C 1.34511 * 106.83640 * 179.83783 * 23 22 21 25 25 O 1.34295 * 108.42432 * 0.42238 * 24 23 22 26 26 C 1.34309 * 109.47579 * 359.72719 * 25 24 23 27 27 C 1.47036 * 118.39492 * 295.22934 * 18 17 16 28 28 H 0.96999 * 119.99739 * 0.02562 * 1 2 3 29 29 H 0.97001 * 119.99803 * 359.97438 * 9 7 2 30 30 H 1.09004 * 109.46963 * 299.72226 * 10 9 7 31 31 H 1.08994 * 109.47567 * 59.72378 * 10 9 7 32 32 H 1.09004 * 109.55445 * 102.16501 * 16 14 13 33 33 H 1.08998 * 109.55688 * 222.37314 * 16 14 13 34 34 H 1.09001 * 109.61874 * 164.77099 * 17 16 14 35 35 H 1.09000 * 109.61560 * 285.31104 * 17 16 14 36 36 H 1.09005 * 109.46569 * 299.99724 * 21 19 18 37 37 H 1.08997 * 109.47362 * 59.99691 * 21 19 18 38 38 H 1.08001 * 126.57790 * 359.97438 * 23 22 21 39 39 H 1.08004 * 125.78230 * 180.11609 * 24 23 22 40 40 H 1.07999 * 125.78923 * 180.02562 * 26 25 24 41 41 H 1.08993 * 109.81556 * 164.74907 * 27 18 17 42 42 H 1.08994 * 109.81624 * 285.59907 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1041 1.6963 -1.2125 5 1 1.2854 2.7465 -0.0006 6 1 3.1039 1.6963 1.2126 7 6 2.0102 -1.2022 0.0005 8 1 3.0903 -1.2023 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 2.0579 -3.6568 0.0072 11 6 1.0785 -4.8022 0.0126 12 7 0.5959 -5.3639 -1.0397 13 6 -0.2550 -6.3646 -0.8713 14 6 -0.4980 -6.6449 0.4229 15 16 0.4422 -5.5388 1.4173 16 6 -1.4199 -7.7285 0.9285 17 6 -2.3561 -8.1560 -0.2076 18 7 -1.5612 -8.3189 -1.4342 19 6 -1.4299 -9.5275 -2.0162 20 8 -1.9705 -10.4973 -1.5283 21 6 -0.6105 -9.6738 -3.2725 22 6 -0.6242 -11.1140 -3.7162 23 6 0.2964 -12.1196 -3.3420 24 6 -0.0886 -13.2501 -3.9608 25 8 -1.1818 -12.9819 -4.6933 26 6 -1.5112 -11.6879 -4.5488 27 6 -0.9135 -7.1313 -2.0106 28 1 -0.4850 0.8401 -0.0004 29 1 0.3555 -2.3880 0.0005 30 1 2.6849 -3.7190 -0.8822 31 1 2.6842 -3.7101 0.8977 32 1 -0.8307 -8.5846 1.2575 33 1 -2.0075 -7.3473 1.7636 34 1 -2.8331 -9.1023 0.0477 35 1 -3.1161 -7.3903 -0.3631 36 1 -1.0347 -9.0480 -4.0578 37 1 0.4156 -9.3637 -3.0753 38 1 1.1446 -12.0030 -2.6836 39 1 0.4016 -14.2096 -3.8857 40 1 -2.3467 -11.1923 -5.0206 41 1 -0.1586 -7.4371 -2.7349 42 1 -1.6595 -6.5032 -2.4973 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001657086623.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:47:11 Heat of formation + Delta-G solvation = 24.351180 kcal Electronic energy + Delta-G solvation = -26659.685530 eV Core-core repulsion = 22732.981379 eV Total energy + Delta-G solvation = -3926.704152 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.109 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -43.43650 -41.61545 -40.36036 -37.64154 -36.45315 -35.04329 -33.80076 -33.29327 -31.31860 -31.07144 -28.95882 -28.41803 -26.79657 -25.38270 -24.28309 -23.30290 -22.48614 -21.70815 -20.59570 -19.58643 -19.23902 -18.94223 -18.36649 -17.85161 -17.14545 -16.84089 -16.77945 -16.62576 -16.02218 -15.84077 -15.54128 -15.31404 -15.03222 -14.92372 -14.76089 -14.30495 -14.04167 -13.81659 -13.78057 -13.65541 -13.56101 -13.32047 -13.05816 -12.96899 -12.72630 -12.48973 -12.37545 -12.18189 -12.12836 -11.87953 -11.14745 -11.01839 -10.61376 -10.52857 -10.22910 -9.88094 -9.62612 -9.41308 -9.09607 -7.96664 -5.28849 -0.36236 0.32221 0.75440 0.89354 1.49388 1.49666 1.53124 1.56905 1.58701 1.67153 1.96851 2.34100 2.56405 2.95818 3.37864 3.52027 3.72487 3.78902 3.84585 3.89309 3.93996 4.07440 4.14359 4.18638 4.28462 4.33009 4.50462 4.53234 4.56196 4.61580 4.72236 4.77672 4.80216 4.85453 4.87715 5.10787 5.15310 5.28476 5.32097 5.47696 5.58753 6.20852 6.21447 6.24522 6.73695 7.06250 7.29298 7.95332 8.22435 9.26354 Molecular weight = 347.11amu Principal moments of inertia in cm(-1) A = 0.020487 B = 0.002059 C = 0.001978 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1366.370720 B =13593.902042 C =14149.454285 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.969 5.969 2 C -0.073 4.073 3 Si 0.980 3.020 4 H -0.277 1.277 5 H -0.297 1.297 6 H -0.274 1.274 7 C -0.249 4.249 8 H 0.085 0.915 9 N -0.736 5.736 10 C 0.227 3.773 11 C 0.038 3.962 12 N -0.479 5.479 13 C 0.028 3.972 14 C -0.225 4.225 15 S 0.158 5.842 16 C -0.050 4.050 17 C 0.115 3.885 18 N -0.611 5.611 19 C 0.525 3.475 20 O -0.567 6.567 21 C -0.069 4.069 22 C -0.183 4.183 23 C -0.224 4.224 24 C -0.045 4.045 25 O -0.191 6.191 26 C -0.036 4.036 27 C 0.197 3.803 28 H 0.252 0.748 29 H 0.373 0.627 30 H 0.050 0.950 31 H 0.056 0.944 32 H 0.087 0.913 33 H 0.109 0.891 34 H 0.103 0.897 35 H 0.089 0.911 36 H 0.132 0.868 37 H 0.115 0.885 38 H 0.151 0.849 39 H 0.232 0.768 40 H 0.224 0.776 41 H 0.124 0.876 42 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.829 -25.186 -4.898 25.814 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.619 5.619 2 C -0.265 4.265 3 Si 0.808 3.192 4 H -0.203 1.203 5 H -0.223 1.223 6 H -0.200 1.200 7 C -0.380 4.380 8 H 0.103 0.897 9 N -0.380 5.380 10 C 0.098 3.902 11 C -0.240 4.240 12 N -0.194 5.194 13 C -0.106 4.106 14 C -0.347 4.347 15 S 0.416 5.584 16 C -0.091 4.091 17 C -0.009 4.009 18 N -0.344 5.344 19 C 0.315 3.685 20 O -0.445 6.445 21 C -0.109 4.109 22 C -0.185 4.185 23 C -0.243 4.243 24 C -0.112 4.112 25 O -0.087 6.087 26 C -0.103 4.103 27 C 0.071 3.929 28 H 0.061 0.939 29 H 0.205 0.795 30 H 0.068 0.932 31 H 0.073 0.927 32 H 0.106 0.894 33 H 0.127 0.873 34 H 0.121 0.879 35 H 0.107 0.893 36 H 0.150 0.850 37 H 0.133 0.867 38 H 0.169 0.831 39 H 0.248 0.752 40 H 0.240 0.760 41 H 0.141 0.859 42 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -2.758 -25.409 -4.222 25.904 hybrid contribution -0.082 1.069 -0.307 1.115 sum -2.839 -24.340 -4.529 24.920 Atomic orbital electron populations 1.69835 1.06790 1.26347 1.58893 1.25646 0.96428 1.01317 1.03118 0.85124 0.77114 0.78583 0.78365 1.20260 1.22300 1.19989 1.19610 0.91797 0.84522 1.42115 0.89749 1.42416 1.05499 1.00256 1.89805 1.19296 0.90305 0.80310 1.00322 1.26843 1.03401 1.02275 0.91467 1.65738 1.11400 1.09239 1.32995 1.21335 0.98351 0.96032 0.94844 1.26313 1.07414 1.04954 0.96015 1.83796 1.37612 1.25462 1.11574 1.20597 0.95488 0.93969 0.99002 1.21709 0.92897 1.03559 0.82744 1.48142 1.50932 1.07740 1.27596 1.20971 0.80345 0.81215 0.85998 1.90690 1.49487 1.38363 1.65996 1.20127 1.02056 0.93531 0.95149 1.20062 0.98941 0.96660 1.02790 1.21963 1.03332 0.93479 1.05553 1.24592 0.88665 1.01580 0.96337 1.84062 1.39806 1.27893 1.56921 1.24319 1.01755 0.81434 1.02818 1.20397 0.97015 0.84724 0.90719 0.93893 0.79505 0.93218 0.92668 0.89431 0.87312 0.87863 0.89298 0.85039 0.86665 0.83111 0.75188 0.75981 0.85855 0.87680 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -58.97 13.06 21.65 0.28 -58.69 16 2 C -0.07 -4.12 5.50 84.86 0.47 -3.65 16 3 Si 0.98 45.29 29.55 68.60 2.03 47.32 16 4 H -0.28 -12.30 7.11 99.48 0.71 -11.60 16 5 H -0.30 -13.88 7.11 99.48 0.71 -13.18 16 6 H -0.27 -12.07 7.11 99.48 0.71 -11.37 16 7 C -0.25 -13.67 9.99 84.03 0.84 -12.83 16 8 H 0.08 4.34 7.83 -2.91 -0.02 4.32 16 9 N -0.74 -37.54 5.59 -347.18 -1.94 -39.49 16 10 C 0.23 9.20 6.84 85.63 0.59 9.79 16 11 C 0.04 1.37 6.75 88.57 0.60 1.96 16 12 N -0.48 -16.48 10.51 -176.96 -1.86 -18.34 16 13 C 0.03 0.75 6.87 42.15 0.29 1.04 16 14 C -0.23 -5.72 6.43 24.95 0.16 -5.56 16 15 S 0.16 4.58 23.17 -56.49 -1.31 3.27 16 16 C -0.05 -0.93 6.44 30.04 0.19 -0.74 16 17 C 0.11 2.04 6.41 86.37 0.55 2.59 16 18 N -0.61 -11.47 2.92 -819.77 -2.39 -13.86 16 19 C 0.52 10.68 7.70 87.66 0.67 11.36 16 20 O -0.57 -15.69 15.46 -3.02 -0.05 -15.73 16 21 C -0.07 -1.03 4.62 29.10 0.13 -0.89 16 22 C -0.18 -3.31 4.66 -19.94 -0.09 -3.41 16 23 C -0.22 -4.03 10.87 22.19 0.24 -3.79 16 24 C -0.05 -0.70 12.09 66.97 0.81 0.11 16 25 O -0.19 -3.53 10.65 -2.46 -0.03 -3.55 16 26 C -0.04 -0.60 12.01 66.97 0.80 0.20 16 27 C 0.20 3.75 6.65 86.04 0.57 4.32 16 28 H 0.25 14.89 8.31 -92.71 -0.77 14.12 16 29 H 0.37 20.70 7.66 -92.71 -0.71 19.99 16 30 H 0.05 2.03 8.14 -2.38 -0.02 2.02 16 31 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16 32 H 0.09 1.59 8.14 -2.38 -0.02 1.58 16 33 H 0.11 1.66 8.14 -2.39 -0.02 1.64 16 34 H 0.10 1.88 7.01 -2.39 -0.02 1.87 16 35 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 36 H 0.13 1.20 8.09 -2.38 -0.02 1.18 16 37 H 0.12 1.49 7.57 -2.39 -0.02 1.47 16 38 H 0.15 2.38 8.06 -2.91 -0.02 2.36 16 39 H 0.23 1.71 8.06 -2.91 -0.02 1.68 16 40 H 0.22 2.25 8.06 -2.91 -0.02 2.22 16 41 H 0.12 1.86 6.15 -2.39 -0.01 1.85 16 42 H 0.11 1.81 8.14 -2.39 -0.02 1.79 16 Total: -1.00 -75.08 371.69 1.93 -73.16 By element: Atomic # 1 Polarization: 25.04 SS G_CDS: 0.36 Total: 25.40 kcal Atomic # 6 Polarization: -6.32 SS G_CDS: 6.83 Total: 0.51 kcal Atomic # 7 Polarization: -124.47 SS G_CDS: -5.91 Total: -130.38 kcal Atomic # 8 Polarization: -19.21 SS G_CDS: -0.07 Total: -19.28 kcal Atomic # 14 Polarization: 45.29 SS G_CDS: 2.03 Total: 47.32 kcal Atomic # 16 Polarization: 4.58 SS G_CDS: -1.31 Total: 3.27 kcal Total: -75.08 1.93 -73.16 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001657086623.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.509 kcal (2) G-P(sol) polarization free energy of solvation -75.084 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.425 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.926 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.158 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.351 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds