Wall clock time and date at job start Wed Apr 1 2020 05:07:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.34181 * 125.43881 * 2 1 4 4 C 1.47020 * 105.95047 * 180.12511 * 3 2 1 5 5 C 1.47382 * 127.18873 * 179.89116 * 4 3 2 6 6 O 1.21612 * 120.00012 * 159.50550 * 5 4 3 7 7 N 1.34773 * 119.99869 * 339.50263 * 5 4 3 8 8 C 1.47069 * 120.80610 * 173.53155 * 7 5 4 9 9 C 1.53306 * 108.60224 * 115.21962 * 8 7 5 10 10 C 1.50979 * 108.96417 * 45.02611 * 9 8 7 11 11 S 1.75958 * 126.03059 * 162.53096 * 10 9 8 12 12 C 1.70898 * 90.30978 * 179.63338 * 11 10 9 13 13 C 1.50697 * 124.92608 * 180.02562 * 12 11 10 14 14 N 1.46494 * 109.47144 * 269.99851 * 13 12 11 15 15 C 1.36942 * 119.99782 * 179.72644 * 14 13 12 16 16 H 1.07997 * 120.00085 * 0.27176 * 15 14 13 17 17 C 1.38811 * 119.99564 * 180.27397 * 15 14 13 18 18 N 1.31617 * 120.00499 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 119.99705 * 179.97438 * 17 15 14 20 20 H 1.48507 * 109.47098 * 90.00003 * 19 17 15 21 21 H 1.48504 * 109.47424 * 209.99861 * 19 17 15 22 22 H 1.48509 * 109.47173 * 330.00141 * 19 17 15 23 23 N 1.28680 * 110.14973 * 0.32563 * 12 11 10 24 24 C 1.32448 * 117.81769 * 359.56664 * 23 12 11 25 25 C 1.47038 * 120.81064 * 353.51330 * 7 5 4 26 26 C 1.36415 * 105.61880 * 359.63024 * 4 3 2 27 27 O 1.33648 * 108.39699 * 0.22521 * 26 4 3 28 28 H 1.09000 * 109.47164 * 180.27130 * 1 2 3 29 29 H 1.09002 * 109.47004 * 300.26447 * 1 2 3 30 30 H 1.08993 * 109.47204 * 60.26594 * 1 2 3 31 31 H 1.07999 * 127.02096 * 0.02562 * 3 2 1 32 32 H 1.09001 * 109.62100 * 234.95848 * 8 7 5 33 33 H 1.09005 * 109.61230 * 355.49177 * 8 7 5 34 34 H 1.09004 * 109.56069 * 285.17395 * 9 8 7 35 35 H 1.09002 * 109.54264 * 164.86958 * 9 8 7 36 36 H 1.09005 * 109.47029 * 149.99206 * 13 12 11 37 37 H 1.09000 * 109.47206 * 29.99995 * 13 12 11 38 38 H 0.96993 * 119.99964 * 359.97438 * 14 13 12 39 39 H 0.96997 * 120.00167 * 179.97438 * 18 17 15 40 40 H 1.08998 * 109.82076 * 105.71862 * 25 7 5 41 41 H 1.09005 * 109.81001 * 344.81650 * 25 7 5 42 42 H 1.08002 * 125.79982 * 180.22173 * 26 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2850 1.0932 0.0000 4 6 3.6710 0.6027 -0.0031 5 6 4.9025 1.4124 -0.0065 6 8 5.9534 0.9223 0.3600 7 7 4.8639 2.6959 -0.4158 8 6 6.0471 3.5610 -0.2944 9 6 6.5165 3.9477 -1.7017 10 6 5.3165 4.3447 -2.5274 11 16 5.3508 5.2615 -4.0290 12 6 3.6480 5.1651 -4.1375 13 6 2.8192 5.7600 -5.2466 14 7 2.4384 7.1292 -4.8910 15 6 1.6822 7.8758 -5.7548 16 1 1.3630 7.4537 -6.6962 17 6 1.3262 9.1751 -5.4203 18 7 1.7158 9.6897 -4.2733 19 14 0.2954 10.1938 -6.5989 20 1 -1.1450 9.9872 -6.3023 21 1 0.6330 11.6309 -6.4367 22 1 0.5786 9.7733 -7.9947 23 7 3.1757 4.5162 -3.1317 24 6 4.0351 4.0505 -2.2379 25 6 3.6382 3.2653 -0.9948 26 6 3.5789 -0.7583 0.0038 27 8 2.2852 -1.0935 0.0055 28 1 -0.3633 -1.0277 0.0049 29 1 -0.3633 0.5179 0.8876 30 1 -0.3633 0.5097 -0.8923 31 1 1.9595 2.1230 0.0004 32 1 5.7874 4.4600 0.2646 33 1 6.8423 3.0230 0.2216 34 1 7.0143 3.0969 -2.1670 35 1 7.2090 4.7870 -1.6373 36 1 1.9214 5.1591 -5.3916 37 1 3.4008 5.7724 -6.1683 38 1 2.7249 7.5082 -4.0453 39 1 1.4673 10.5978 -4.0397 40 1 3.1630 3.9303 -0.2737 41 1 2.9516 2.4637 -1.2676 42 1 4.4103 -1.4477 0.0073 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001657087016.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:07:30 Heat of formation + Delta-G solvation = 30.516412 kcal Electronic energy + Delta-G solvation = -27131.756153 eV Core-core repulsion = 23205.319346 eV Total energy + Delta-G solvation = -3926.436807 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.109 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -43.63947 -41.58582 -40.30148 -37.66792 -36.47576 -34.71672 -33.63631 -33.24380 -32.56034 -31.18491 -28.49503 -27.77814 -27.25262 -25.43138 -25.11036 -23.83506 -22.93185 -22.07577 -20.38063 -19.54482 -19.32023 -18.90622 -18.25170 -17.62371 -17.25589 -17.22168 -16.79976 -16.56470 -15.98374 -15.79408 -15.45914 -15.27712 -14.96173 -14.86478 -14.52796 -14.19557 -14.08586 -13.95844 -13.84832 -13.76280 -13.68105 -13.41856 -13.08323 -12.97181 -12.78098 -12.73808 -12.40187 -12.13325 -12.11765 -11.87837 -11.30636 -11.03599 -10.80856 -10.62247 -10.24465 -9.97151 -9.67358 -9.51569 -9.10016 -7.96875 -5.29171 -0.38221 0.27110 0.34428 0.72942 0.96608 1.49431 1.51653 1.58776 1.60696 1.67967 1.89708 2.13566 2.56068 2.92267 3.32911 3.37929 3.58964 3.68521 3.79155 3.85314 3.94475 4.06504 4.14271 4.21730 4.27555 4.32626 4.42426 4.45601 4.55428 4.67412 4.74942 4.75544 4.76669 4.82522 4.85689 4.87211 5.07834 5.12338 5.23699 5.38537 5.47792 5.98361 6.14314 6.21235 6.71209 6.91837 7.29178 7.94742 8.22248 9.26424 Molecular weight = 347.11amu Principal moments of inertia in cm(-1) A = 0.012850 B = 0.002665 C = 0.002325 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2178.492367 B =10502.211846 C =12039.420221 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C -0.005 4.005 3 C -0.211 4.211 4 C -0.267 4.267 5 C 0.599 3.401 6 O -0.570 6.570 7 N -0.603 5.603 8 C 0.115 3.885 9 C -0.051 4.051 10 C -0.226 4.226 11 S 0.165 5.835 12 C 0.037 3.963 13 C 0.228 3.772 14 N -0.735 5.735 15 C -0.249 4.249 16 H 0.085 0.915 17 C -0.071 4.071 18 N -0.969 5.969 19 Si 0.979 3.021 20 H -0.287 1.287 21 H -0.295 1.295 22 H -0.265 1.265 23 N -0.479 5.479 24 C 0.026 3.974 25 C 0.187 3.813 26 C 0.055 3.945 27 O -0.177 6.177 28 H 0.088 0.912 29 H 0.103 0.897 30 H 0.097 0.903 31 H 0.173 0.827 32 H 0.093 0.907 33 H 0.109 0.891 34 H 0.090 0.910 35 H 0.114 0.886 36 H 0.049 0.951 37 H 0.057 0.943 38 H 0.373 0.627 39 H 0.253 0.747 40 H 0.102 0.898 41 H 0.125 0.875 42 H 0.238 0.762 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.403 -20.684 9.982 23.593 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.054 4.054 3 C -0.229 4.229 4 C -0.272 4.272 5 C 0.390 3.610 6 O -0.451 6.451 7 N -0.335 5.335 8 C -0.009 4.009 9 C -0.091 4.091 10 C -0.348 4.348 11 S 0.423 5.577 12 C -0.241 4.241 13 C 0.099 3.901 14 N -0.379 5.379 15 C -0.380 4.380 16 H 0.103 0.897 17 C -0.264 4.264 18 N -0.619 5.619 19 Si 0.807 3.193 20 H -0.214 1.214 21 H -0.222 1.222 22 H -0.190 1.190 23 N -0.194 5.194 24 C -0.107 4.107 25 C 0.062 3.938 26 C -0.015 4.015 27 O -0.073 6.073 28 H 0.107 0.893 29 H 0.121 0.879 30 H 0.115 0.885 31 H 0.190 0.810 32 H 0.111 0.889 33 H 0.128 0.872 34 H 0.108 0.892 35 H 0.132 0.868 36 H 0.067 0.933 37 H 0.074 0.926 38 H 0.205 0.795 39 H 0.061 0.939 40 H 0.120 0.880 41 H 0.142 0.858 42 H 0.255 0.745 Dipole moment (debyes) X Y Z Total from point charges 5.936 -20.774 9.348 23.541 hybrid contribution -0.616 0.881 0.324 1.123 sum 5.320 -19.893 9.672 22.750 Atomic orbital electron populations 1.20555 0.82312 1.05334 1.05196 1.22966 0.95499 0.83140 1.03789 1.23045 0.90139 1.00802 1.08960 1.21404 0.93789 0.94889 1.17072 1.17406 0.87142 0.80553 0.75858 1.90758 1.32363 1.71329 1.50669 1.47852 1.13803 1.10837 1.60975 1.21829 0.88120 0.94800 0.96112 1.20628 0.92357 1.02891 0.93221 1.26347 1.00183 1.06585 1.01683 1.83722 1.06115 1.48922 1.18910 1.26886 0.96526 1.01458 0.99271 1.19291 0.94941 0.85449 0.90467 1.42416 1.63489 1.10153 1.21883 1.19647 1.24268 0.94652 0.99444 0.89747 1.25630 1.02914 0.98681 0.99141 1.69837 1.51856 1.15834 1.24343 0.85069 0.78148 0.77367 0.78689 1.21369 1.22210 1.18991 1.65720 1.39113 1.12146 1.02415 1.21279 0.88214 1.02730 0.98510 1.20865 0.86525 0.97422 0.89035 1.24753 0.84318 0.95175 0.97259 1.83804 1.16614 1.35963 1.70897 0.89297 0.87868 0.88484 0.80960 0.88924 0.87233 0.89187 0.86755 0.93282 0.92580 0.79494 0.93873 0.88037 0.85796 0.74549 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.75 10.40 71.24 0.74 -0.01 16 2 C -0.01 -0.09 7.28 24.76 0.18 0.09 16 3 C -0.21 -3.93 8.60 23.65 0.20 -3.73 16 4 C -0.27 -5.75 5.85 -18.99 -0.11 -5.86 16 5 C 0.60 14.84 7.67 86.65 0.66 15.50 16 6 O -0.57 -16.64 16.43 -4.07 -0.07 -16.71 16 7 N -0.60 -13.64 2.92 -823.67 -2.40 -16.05 16 8 C 0.11 2.20 6.40 86.37 0.55 2.76 16 9 C -0.05 -0.99 6.44 30.04 0.19 -0.80 16 10 C -0.23 -6.11 6.43 24.95 0.16 -5.95 16 11 S 0.17 4.94 23.17 -56.49 -1.31 3.64 16 12 C 0.04 1.35 6.75 88.57 0.60 1.95 16 13 C 0.23 9.38 6.84 85.63 0.59 9.97 16 14 N -0.74 -37.78 5.59 -347.19 -1.94 -39.73 16 15 C -0.25 -13.70 9.99 84.03 0.84 -12.86 16 16 H 0.08 4.37 7.83 -2.91 -0.02 4.35 16 17 C -0.07 -4.04 5.50 84.86 0.47 -3.57 16 18 N -0.97 -59.06 13.06 21.65 0.28 -58.78 16 19 Si 0.98 45.33 29.55 68.60 2.03 47.35 16 20 H -0.29 -13.08 7.11 99.48 0.71 -12.37 16 21 H -0.30 -13.79 7.11 99.48 0.71 -13.09 16 22 H -0.27 -11.49 7.11 99.48 0.71 -10.78 16 23 N -0.48 -17.34 10.51 -176.96 -1.86 -19.20 16 24 C 0.03 0.77 6.87 42.15 0.29 1.06 16 25 C 0.19 4.39 5.29 86.04 0.45 4.85 16 26 C 0.06 0.99 11.96 67.39 0.81 1.80 16 27 O -0.18 -3.16 10.52 4.46 0.05 -3.11 16 28 H 0.09 0.67 8.14 -2.39 -0.02 0.65 16 29 H 0.10 0.72 8.14 -2.39 -0.02 0.70 16 30 H 0.10 0.86 8.14 -2.39 -0.02 0.84 16 31 H 0.17 2.86 6.03 -2.91 -0.02 2.84 16 32 H 0.09 1.56 8.14 -2.39 -0.02 1.54 16 33 H 0.11 2.04 7.05 -2.38 -0.02 2.02 16 34 H 0.09 1.72 8.14 -2.38 -0.02 1.70 16 35 H 0.11 1.76 8.14 -2.39 -0.02 1.74 16 36 H 0.05 2.04 8.14 -2.38 -0.02 2.02 16 37 H 0.06 2.15 8.14 -2.39 -0.02 2.13 16 38 H 0.37 20.84 7.66 -92.71 -0.71 20.13 16 39 H 0.25 14.88 8.31 -92.71 -0.77 14.11 16 40 H 0.10 2.15 8.05 -2.39 -0.02 2.13 16 41 H 0.12 2.82 4.37 -2.38 -0.01 2.81 16 42 H 0.24 2.89 8.06 -2.91 -0.02 2.86 16 Total: -1.00 -72.85 367.83 1.77 -71.08 By element: Atomic # 1 Polarization: 25.95 SS G_CDS: 0.37 Total: 26.32 kcal Atomic # 6 Polarization: -1.44 SS G_CDS: 6.62 Total: 5.18 kcal Atomic # 7 Polarization: -127.83 SS G_CDS: -5.92 Total: -133.76 kcal Atomic # 8 Polarization: -19.80 SS G_CDS: -0.02 Total: -19.82 kcal Atomic # 14 Polarization: 45.33 SS G_CDS: 2.03 Total: 47.35 kcal Atomic # 16 Polarization: 4.94 SS G_CDS: -1.31 Total: 3.64 kcal Total: -72.85 1.77 -71.08 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001657087016.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.594 kcal (2) G-P(sol) polarization free energy of solvation -72.852 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.742 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.774 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.077 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.516 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds