Wall clock time and date at job start Wed Apr 1 2020 04:31:09
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31624 * 1
3 3 Si 1.86802 * 120.00175 * 2 1
4 4 H 1.48493 * 109.46852 * 269.99621 * 3 2 1
5 5 H 1.48499 * 109.47283 * 29.99847 * 3 2 1
6 6 H 1.48502 * 109.46956 * 149.99684 * 3 2 1
7 7 C 1.38815 * 119.99481 * 179.97438 * 2 1 3
8 8 H 1.07999 * 120.00452 * 0.02562 * 7 2 1
9 9 N 1.36942 * 119.99651 * 180.02562 * 7 2 1
10 10 C 1.46492 * 119.99991 * 174.42426 * 9 7 2
11 11 C 1.53000 * 112.85124 * 293.74427 * 10 9 7
12 12 N 1.46506 * 109.46857 * 311.21419 * 11 10 9
13 13 C 1.34776 * 119.99709 * 174.81316 * 12 11 10
14 14 O 1.21499 * 120.00362 * 359.97438 * 13 12 11
15 15 C 1.48345 * 119.99610 * 180.02562 * 13 12 11
16 16 C 1.41710 * 126.81266 * 179.70975 * 15 13 12
17 17 C 1.37151 * 103.79940 * 179.89027 * 16 15 13
18 18 C 1.47030 * 126.85581 * 180.11508 * 17 16 15
19 19 C 1.36199 * 125.33164 * 179.97438 * 18 17 16
20 20 C 1.37713 * 114.44270 * 179.79522 * 19 18 17
21 21 C 1.33736 * 115.19176 * 0.50001 * 20 19 18
22 22 S 1.75819 * 109.95937 * 359.72782 * 21 20 19
23 23 O 1.34563 * 106.28275 * 0.36750 * 17 16 15
24 24 N 1.20870 * 111.69582 * 359.75013 * 23 17 16
25 25 C 1.53786 * 113.61730 * 162.43502 * 10 9 7
26 26 C 1.53775 * 87.08242 * 270.88459 * 25 10 9
27 27 C 1.53781 * 87.08198 * 334.56649 * 26 25 10
28 28 H 0.97003 * 119.99553 * 359.97438 * 1 2 3
29 29 H 0.97001 * 120.00317 * 354.14351 * 9 7 2
30 30 H 1.08999 * 109.47342 * 71.21146 * 11 10 9
31 31 H 1.08999 * 109.47228 * 191.21324 * 11 10 9
32 32 H 0.96997 * 120.00050 * 354.81417 * 12 11 10
33 33 H 1.08001 * 128.09658 * 0.02562 * 16 15 13
34 34 H 1.08006 * 122.78068 * 359.96580 * 19 18 17
35 35 H 1.08005 * 122.40558 * 180.20701 * 20 19 18
36 36 H 1.07996 * 125.01606 * 179.73313 * 21 20 19
37 37 H 1.08995 * 113.60945 * 25.43732 * 25 10 9
38 38 H 1.08997 * 113.61503 * 156.33449 * 25 10 9
39 39 H 1.08998 * 113.61506 * 220.01678 * 26 25 10
40 40 H 1.08997 * 113.61590 * 89.11155 * 26 25 10
41 41 H 1.08998 * 113.61637 * 270.88469 * 27 26 25
42 42 H 1.09001 * 113.61760 * 139.98233 * 27 26 25
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3162 0.0000 0.0000
3 14 2.2503 1.6177 0.0000
4 1 2.4978 2.0463 -1.4000
5 1 1.4478 2.6527 0.7000
6 1 3.5478 1.4401 0.7001
7 6 2.0102 -1.2022 0.0005
8 1 1.4702 -2.1375 0.0005
9 7 3.3796 -1.2023 0.0011
10 6 4.1120 -2.4649 0.1249
11 6 3.9169 -3.1339 1.4870
12 7 4.1355 -2.1498 2.5501
13 6 3.9151 -2.4870 3.8362
14 8 3.5346 -3.6069 4.1140
15 6 4.1359 -1.4904 4.9126
16 6 3.9451 -1.6859 6.3031
17 6 4.2854 -0.4766 6.8533
18 6 4.2716 -0.1216 8.2800
19 6 4.6170 1.0918 8.7932
20 6 4.5175 1.1800 10.1639
21 6 4.1095 0.0643 10.7780
22 16 3.8138 -1.1997 9.5922
23 8 4.6289 0.3219 5.8261
24 7 4.5411 -0.2514 4.7657
25 6 5.5836 -2.3689 -0.3112
26 6 5.1049 -2.7240 -1.7287
27 6 3.9036 -3.4172 -1.0645
28 1 -0.4850 0.8401 0.0004
29 1 3.8647 -0.3667 -0.0846
30 1 2.9021 -3.5254 1.5575
31 1 4.6300 -3.9510 1.5960
32 1 4.4389 -1.2556 2.3283
33 1 3.6121 -2.5790 6.8109
34 1 4.9395 1.9174 8.1760
35 1 4.7566 2.0839 10.7046
36 1 3.9807 -0.0442 11.8448
37 1 5.9985 -1.3644 -0.2292
38 1 6.2224 -3.1297 0.1373
39 1 5.7688 -3.4100 -2.2548
40 1 4.8314 -1.8554 -2.3276
41 1 4.0831 -4.4646 -0.8219
42 1 2.9623 -3.2589 -1.5908
RHF calculation, no. of doubly occupied orbitals= 61
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001673193535.mol2 42
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 04:31:09
Heat of formation + Delta-G solvation = 103.478617 kcal
Electronic energy + Delta-G solvation = -27264.564594 eV
Core-core repulsion = 23341.291665 eV
Total energy + Delta-G solvation = -3923.272929 eV
No. of doubly occupied orbitals = 61
Molecular weight
(most abundant/longest-lived isotopes) = 347.109 amu
Computer time = 2.08 seconds
Orbital eigenvalues (eV)
-45.08894 -39.61879 -38.52842 -38.09667 -34.17486 -34.10149 -33.29431 -32.89244
-30.58623 -28.97411 -27.84397 -25.36624 -25.16265 -24.41567 -23.44755 -22.85280
-21.62850 -20.61749 -19.44298 -18.74684 -18.21418 -17.87735 -17.67052 -16.83920
-16.69777 -15.83161 -15.51924 -15.07989 -14.75813 -14.45260 -14.25857 -14.17717
-13.68589 -13.56925 -13.49401 -13.04238 -12.99802 -12.70865 -12.67911 -12.51012
-11.87415 -11.64979 -11.49724 -11.24107 -11.19757 -10.93467 -10.59635 -10.50443
-10.46743 -10.34831 -10.20718 -9.95724 -9.70960 -9.54310 -8.94385 -8.92964
-8.64716 -8.58156 -7.38415 -5.82211 -3.20620 0.01957 0.94566 1.24444
1.50090 1.68274 2.48042 2.86555 3.18362 3.33060 3.35170 3.41487
3.42169 3.96243 4.27281 4.53303 4.63084 4.76317 4.97389 5.00749
5.02829 5.04902 5.12678 5.16655 5.23997 5.33452 5.39018 5.59002
5.66096 5.68377 5.84497 5.91145 5.97301 6.02112 6.08353 6.17264
6.21732 6.40297 6.59604 6.73642 6.81278 6.92836 7.70473 7.93680
7.97585 8.35389 8.40263 9.12500 9.84340 10.01822 11.35467
Molecular weight = 347.11amu
Principal moments of inertia in cm(-1)
A = 0.013426 B = 0.002777 C = 0.002512
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2085.020854 B =10079.409751 C =11142.064524
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.928 5.928
2 C 0.011 3.989
3 Si 0.878 3.122
4 H -0.284 1.284
5 H -0.291 1.291
6 H -0.275 1.275
7 C -0.242 4.242
8 H 0.092 0.908
9 N -0.724 5.724
10 C 0.177 3.823
11 C 0.121 3.879
12 N -0.682 5.682
13 C 0.593 3.407
14 O -0.533 6.533
15 C -0.010 4.010
16 C -0.165 4.165
17 C 0.031 3.969
18 C -0.136 4.136
19 C -0.102 4.102
20 C -0.135 4.135
21 C -0.211 4.211
22 S 0.175 5.825
23 O 0.136 5.864
24 N -0.322 5.322
25 C -0.147 4.147
26 C -0.130 4.130
27 C -0.146 4.146
28 H 0.260 0.740
29 H 0.364 0.636
30 H 0.075 0.925
31 H 0.061 0.939
32 H 0.407 0.593
33 H 0.183 0.817
34 H 0.151 0.849
35 H 0.147 0.853
36 H 0.171 0.829
37 H 0.063 0.937
38 H 0.081 0.919
39 H 0.057 0.943
40 H 0.080 0.920
41 H 0.072 0.928
42 H 0.080 0.920
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 13.260 -1.056 18.344 22.659
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.575 5.575
2 C -0.186 4.186
3 Si 0.708 3.292
4 H -0.211 1.211
5 H -0.218 1.218
6 H -0.201 1.201
7 C -0.371 4.371
8 H 0.110 0.890
9 N -0.367 5.367
10 C 0.084 3.916
11 C -0.005 4.005
12 N -0.331 5.331
13 C 0.376 3.624
14 O -0.410 6.410
15 C -0.168 4.168
16 C -0.188 4.188
17 C -0.034 4.034
18 C -0.255 4.255
19 C -0.135 4.135
20 C -0.165 4.165
21 C -0.347 4.347
22 S 0.440 5.560
23 O 0.057 5.943
24 N -0.021 5.021
25 C -0.185 4.185
26 C -0.167 4.167
27 C -0.186 4.186
28 H 0.070 0.930
29 H 0.197 0.803
30 H 0.093 0.907
31 H 0.079 0.921
32 H 0.243 0.757
33 H 0.200 0.800
34 H 0.169 0.831
35 H 0.165 0.835
36 H 0.188 0.812
37 H 0.082 0.918
38 H 0.100 0.900
39 H 0.076 0.924
40 H 0.099 0.901
41 H 0.091 0.909
42 H 0.099 0.901
Dipole moment (debyes) X Y Z Total
from point charges 12.540 -2.747 17.478 21.686
hybrid contribution 0.732 2.721 0.336 2.838
sum 13.273 -0.026 17.814 22.215
Atomic orbital electron populations
1.69696 1.05095 1.25838 1.56884 1.24657 0.95153 0.97047 1.01699
0.86656 0.79447 0.85348 0.77728 1.21083 1.21760 1.20128 1.18911
0.80041 0.94685 1.43472 0.89038 1.42419 1.04037 1.01608 1.88604
1.20788 0.91130 0.88652 0.91006 1.21926 1.01762 0.90089 0.86711
1.45591 1.65539 1.17184 1.04778 1.16792 0.78520 0.85456 0.81677
1.90768 1.47071 1.20329 1.82791 1.23437 1.05035 0.92696 0.95639
1.22603 1.05140 0.98998 0.92065 1.21239 1.03583 0.90116 0.88430
1.21799 1.12794 0.99302 0.91570 1.20757 1.00667 0.96712 0.95328
1.20038 1.03091 0.99589 0.93761 1.25961 1.08192 0.96992 1.03605
1.84341 1.64245 1.13347 0.94103 1.84930 1.62782 1.36697 1.09842
1.74209 1.16201 1.08081 1.03612 1.23253 0.96243 1.01445 0.97550
1.22650 0.97760 1.00596 0.95726 1.23268 0.99458 0.97645 0.98253
0.93005 0.80274 0.90690 0.92063 0.75744 0.80002 0.83145 0.83510
0.81158 0.91848 0.90005 0.92399 0.90137 0.90911 0.90140
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 40.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.93 -28.85 13.97 55.49 0.78 -28.07 16
2 C 0.01 0.31 5.50 -17.43 -0.10 0.21 16
3 Si 0.88 21.76 27.68 -169.99 -4.71 17.05 16
4 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16
5 H -0.29 -7.47 7.11 56.52 0.40 -7.07 16
6 H -0.28 -6.39 6.61 56.52 0.37 -6.01 16
7 C -0.24 -6.48 9.74 -15.06 -0.15 -6.62 16
8 H 0.09 2.69 8.06 -52.49 -0.42 2.26 16
9 N -0.72 -15.91 4.38 -46.48 -0.20 -16.11 16
10 C 0.18 3.17 0.90 -131.01 -0.12 3.05 16
11 C 0.12 2.20 5.03 -4.04 -0.02 2.18 16
12 N -0.68 -12.71 5.38 -61.08 -0.33 -13.04 16
13 C 0.59 11.29 7.85 -12.10 -0.09 11.19 16
14 O -0.53 -11.14 16.94 5.37 0.09 -11.04 16
15 C -0.01 -0.17 7.17 -82.66 -0.59 -0.76 16
16 C -0.16 -2.32 10.77 -38.65 -0.42 -2.74 16
17 C 0.03 0.40 7.28 -36.41 -0.26 0.13 16
18 C -0.14 -1.40 6.45 -36.75 -0.24 -1.63 16
19 C -0.10 -0.88 10.17 -40.51 -0.41 -1.29 16
20 C -0.13 -0.91 10.15 -41.35 -0.42 -1.33 16
21 C -0.21 -1.33 11.21 29.15 0.33 -1.01 16
22 S 0.17 1.41 23.11 -107.50 -2.48 -1.08 16
23 O 0.14 1.96 11.21 15.78 0.18 2.14 16
24 N -0.32 -5.38 11.81 33.36 0.39 -4.98 16
25 C -0.15 -2.15 7.37 -25.92 -0.19 -2.34 16
26 C -0.13 -1.91 7.99 -25.92 -0.21 -2.11 16
27 C -0.15 -2.42 7.28 -25.92 -0.19 -2.61 16
28 H 0.26 7.75 8.31 -40.82 -0.34 7.41 16
29 H 0.36 7.94 5.80 -40.82 -0.24 7.70 16
30 H 0.07 1.56 8.13 -51.93 -0.42 1.14 16
31 H 0.06 0.99 7.95 -51.93 -0.41 0.57 16
32 H 0.41 7.60 7.88 -40.82 -0.32 7.28 16
33 H 0.18 2.22 8.06 -52.49 -0.42 1.80 16
34 H 0.15 1.12 8.06 -52.48 -0.42 0.70 16
35 H 0.15 0.65 8.06 -52.48 -0.42 0.23 16
36 H 0.17 0.63 8.06 -52.49 -0.42 0.21 16
37 H 0.06 0.92 8.09 -51.93 -0.42 0.50 16
38 H 0.08 1.05 7.97 -51.93 -0.41 0.63 16
39 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16
40 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16
41 H 0.07 1.05 8.10 -51.93 -0.42 0.63 16
42 H 0.08 1.53 7.83 -51.93 -0.41 1.13 16
LS Contribution 376.79 15.07 5.68 5.68
Total: -1.00 -32.61 376.79 -8.86 -41.47
By element:
Atomic # 1 Polarization: 18.85 SS G_CDS: -5.18 Total: 13.67 kcal
Atomic # 6 Polarization: -2.60 SS G_CDS: -3.08 Total: -5.68 kcal
Atomic # 7 Polarization: -62.85 SS G_CDS: 0.64 Total: -62.21 kcal
Atomic # 8 Polarization: -9.18 SS G_CDS: 0.27 Total: -8.91 kcal
Atomic # 14 Polarization: 21.76 SS G_CDS: -4.71 Total: 17.05 kcal
Atomic # 16 Polarization: 1.41 SS G_CDS: -2.48 Total: -1.08 kcal
Total LS contribution 5.68 Total: 5.68 kcal
Total: -32.61 -8.86 -41.47 kcal
The number of atoms in the molecule is 42
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001673193535.mol2 42
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 144.947 kcal
(2) G-P(sol) polarization free energy of solvation -32.605 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 112.342 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.863 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.468 kcal
(6) G-S(sol) free energy of system = (1) + (5) 103.479 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 2.09 seconds