Wall clock time and date at job start Wed Apr 1 2020 04:31:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86802 * 120.00175 * 2 1 4 4 H 1.48493 * 109.46852 * 269.99621 * 3 2 1 5 5 H 1.48499 * 109.47283 * 29.99847 * 3 2 1 6 6 H 1.48502 * 109.46956 * 149.99684 * 3 2 1 7 7 C 1.38815 * 119.99481 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00452 * 0.02562 * 7 2 1 9 9 N 1.36942 * 119.99651 * 180.02562 * 7 2 1 10 10 C 1.46492 * 119.99991 * 174.42426 * 9 7 2 11 11 C 1.53000 * 112.85124 * 293.74427 * 10 9 7 12 12 N 1.46506 * 109.46857 * 311.21419 * 11 10 9 13 13 C 1.34776 * 119.99709 * 174.81316 * 12 11 10 14 14 O 1.21499 * 120.00362 * 359.97438 * 13 12 11 15 15 C 1.48345 * 119.99610 * 180.02562 * 13 12 11 16 16 C 1.41710 * 126.81266 * 179.70975 * 15 13 12 17 17 C 1.37151 * 103.79940 * 179.89027 * 16 15 13 18 18 C 1.47030 * 126.85581 * 180.11508 * 17 16 15 19 19 C 1.36199 * 125.33164 * 179.97438 * 18 17 16 20 20 C 1.37713 * 114.44270 * 179.79522 * 19 18 17 21 21 C 1.33736 * 115.19176 * 0.50001 * 20 19 18 22 22 S 1.75819 * 109.95937 * 359.72782 * 21 20 19 23 23 O 1.34563 * 106.28275 * 0.36750 * 17 16 15 24 24 N 1.20870 * 111.69582 * 359.75013 * 23 17 16 25 25 C 1.53786 * 113.61730 * 162.43502 * 10 9 7 26 26 C 1.53775 * 87.08242 * 270.88459 * 25 10 9 27 27 C 1.53781 * 87.08198 * 334.56649 * 26 25 10 28 28 H 0.97003 * 119.99553 * 359.97438 * 1 2 3 29 29 H 0.97001 * 120.00317 * 354.14351 * 9 7 2 30 30 H 1.08999 * 109.47342 * 71.21146 * 11 10 9 31 31 H 1.08999 * 109.47228 * 191.21324 * 11 10 9 32 32 H 0.96997 * 120.00050 * 354.81417 * 12 11 10 33 33 H 1.08001 * 128.09658 * 0.02562 * 16 15 13 34 34 H 1.08006 * 122.78068 * 359.96580 * 19 18 17 35 35 H 1.08005 * 122.40558 * 180.20701 * 20 19 18 36 36 H 1.07996 * 125.01606 * 179.73313 * 21 20 19 37 37 H 1.08995 * 113.60945 * 25.43732 * 25 10 9 38 38 H 1.08997 * 113.61503 * 156.33449 * 25 10 9 39 39 H 1.08998 * 113.61506 * 220.01678 * 26 25 10 40 40 H 1.08997 * 113.61590 * 89.11155 * 26 25 10 41 41 H 1.08998 * 113.61637 * 270.88469 * 27 26 25 42 42 H 1.09001 * 113.61760 * 139.98233 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0463 -1.4000 5 1 1.4478 2.6527 0.7000 6 1 3.5478 1.4401 0.7001 7 6 2.0102 -1.2022 0.0005 8 1 1.4702 -2.1375 0.0005 9 7 3.3796 -1.2023 0.0011 10 6 4.1120 -2.4649 0.1249 11 6 3.9169 -3.1339 1.4870 12 7 4.1355 -2.1498 2.5501 13 6 3.9151 -2.4870 3.8362 14 8 3.5346 -3.6069 4.1140 15 6 4.1359 -1.4904 4.9126 16 6 3.9451 -1.6859 6.3031 17 6 4.2854 -0.4766 6.8533 18 6 4.2716 -0.1216 8.2800 19 6 4.6170 1.0918 8.7932 20 6 4.5175 1.1800 10.1639 21 6 4.1095 0.0643 10.7780 22 16 3.8138 -1.1997 9.5922 23 8 4.6289 0.3219 5.8261 24 7 4.5411 -0.2514 4.7657 25 6 5.5836 -2.3689 -0.3112 26 6 5.1049 -2.7240 -1.7287 27 6 3.9036 -3.4172 -1.0645 28 1 -0.4850 0.8401 0.0004 29 1 3.8647 -0.3667 -0.0846 30 1 2.9021 -3.5254 1.5575 31 1 4.6300 -3.9510 1.5960 32 1 4.4389 -1.2556 2.3283 33 1 3.6121 -2.5790 6.8109 34 1 4.9395 1.9174 8.1760 35 1 4.7566 2.0839 10.7046 36 1 3.9807 -0.0442 11.8448 37 1 5.9985 -1.3644 -0.2292 38 1 6.2224 -3.1297 0.1373 39 1 5.7688 -3.4100 -2.2548 40 1 4.8314 -1.8554 -2.3276 41 1 4.0831 -4.4646 -0.8219 42 1 2.9623 -3.2589 -1.5908 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001673193535.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:31:09 Heat of formation + Delta-G solvation = 103.478617 kcal Electronic energy + Delta-G solvation = -27264.564594 eV Core-core repulsion = 23341.291665 eV Total energy + Delta-G solvation = -3923.272929 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.109 amu Computer time = 2.08 seconds Orbital eigenvalues (eV) -45.08894 -39.61879 -38.52842 -38.09667 -34.17486 -34.10149 -33.29431 -32.89244 -30.58623 -28.97411 -27.84397 -25.36624 -25.16265 -24.41567 -23.44755 -22.85280 -21.62850 -20.61749 -19.44298 -18.74684 -18.21418 -17.87735 -17.67052 -16.83920 -16.69777 -15.83161 -15.51924 -15.07989 -14.75813 -14.45260 -14.25857 -14.17717 -13.68589 -13.56925 -13.49401 -13.04238 -12.99802 -12.70865 -12.67911 -12.51012 -11.87415 -11.64979 -11.49724 -11.24107 -11.19757 -10.93467 -10.59635 -10.50443 -10.46743 -10.34831 -10.20718 -9.95724 -9.70960 -9.54310 -8.94385 -8.92964 -8.64716 -8.58156 -7.38415 -5.82211 -3.20620 0.01957 0.94566 1.24444 1.50090 1.68274 2.48042 2.86555 3.18362 3.33060 3.35170 3.41487 3.42169 3.96243 4.27281 4.53303 4.63084 4.76317 4.97389 5.00749 5.02829 5.04902 5.12678 5.16655 5.23997 5.33452 5.39018 5.59002 5.66096 5.68377 5.84497 5.91145 5.97301 6.02112 6.08353 6.17264 6.21732 6.40297 6.59604 6.73642 6.81278 6.92836 7.70473 7.93680 7.97585 8.35389 8.40263 9.12500 9.84340 10.01822 11.35467 Molecular weight = 347.11amu Principal moments of inertia in cm(-1) A = 0.013426 B = 0.002777 C = 0.002512 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2085.020854 B =10079.409751 C =11142.064524 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C 0.011 3.989 3 Si 0.878 3.122 4 H -0.284 1.284 5 H -0.291 1.291 6 H -0.275 1.275 7 C -0.242 4.242 8 H 0.092 0.908 9 N -0.724 5.724 10 C 0.177 3.823 11 C 0.121 3.879 12 N -0.682 5.682 13 C 0.593 3.407 14 O -0.533 6.533 15 C -0.010 4.010 16 C -0.165 4.165 17 C 0.031 3.969 18 C -0.136 4.136 19 C -0.102 4.102 20 C -0.135 4.135 21 C -0.211 4.211 22 S 0.175 5.825 23 O 0.136 5.864 24 N -0.322 5.322 25 C -0.147 4.147 26 C -0.130 4.130 27 C -0.146 4.146 28 H 0.260 0.740 29 H 0.364 0.636 30 H 0.075 0.925 31 H 0.061 0.939 32 H 0.407 0.593 33 H 0.183 0.817 34 H 0.151 0.849 35 H 0.147 0.853 36 H 0.171 0.829 37 H 0.063 0.937 38 H 0.081 0.919 39 H 0.057 0.943 40 H 0.080 0.920 41 H 0.072 0.928 42 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.260 -1.056 18.344 22.659 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.186 4.186 3 Si 0.708 3.292 4 H -0.211 1.211 5 H -0.218 1.218 6 H -0.201 1.201 7 C -0.371 4.371 8 H 0.110 0.890 9 N -0.367 5.367 10 C 0.084 3.916 11 C -0.005 4.005 12 N -0.331 5.331 13 C 0.376 3.624 14 O -0.410 6.410 15 C -0.168 4.168 16 C -0.188 4.188 17 C -0.034 4.034 18 C -0.255 4.255 19 C -0.135 4.135 20 C -0.165 4.165 21 C -0.347 4.347 22 S 0.440 5.560 23 O 0.057 5.943 24 N -0.021 5.021 25 C -0.185 4.185 26 C -0.167 4.167 27 C -0.186 4.186 28 H 0.070 0.930 29 H 0.197 0.803 30 H 0.093 0.907 31 H 0.079 0.921 32 H 0.243 0.757 33 H 0.200 0.800 34 H 0.169 0.831 35 H 0.165 0.835 36 H 0.188 0.812 37 H 0.082 0.918 38 H 0.100 0.900 39 H 0.076 0.924 40 H 0.099 0.901 41 H 0.091 0.909 42 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 12.540 -2.747 17.478 21.686 hybrid contribution 0.732 2.721 0.336 2.838 sum 13.273 -0.026 17.814 22.215 Atomic orbital electron populations 1.69696 1.05095 1.25838 1.56884 1.24657 0.95153 0.97047 1.01699 0.86656 0.79447 0.85348 0.77728 1.21083 1.21760 1.20128 1.18911 0.80041 0.94685 1.43472 0.89038 1.42419 1.04037 1.01608 1.88604 1.20788 0.91130 0.88652 0.91006 1.21926 1.01762 0.90089 0.86711 1.45591 1.65539 1.17184 1.04778 1.16792 0.78520 0.85456 0.81677 1.90768 1.47071 1.20329 1.82791 1.23437 1.05035 0.92696 0.95639 1.22603 1.05140 0.98998 0.92065 1.21239 1.03583 0.90116 0.88430 1.21799 1.12794 0.99302 0.91570 1.20757 1.00667 0.96712 0.95328 1.20038 1.03091 0.99589 0.93761 1.25961 1.08192 0.96992 1.03605 1.84341 1.64245 1.13347 0.94103 1.84930 1.62782 1.36697 1.09842 1.74209 1.16201 1.08081 1.03612 1.23253 0.96243 1.01445 0.97550 1.22650 0.97760 1.00596 0.95726 1.23268 0.99458 0.97645 0.98253 0.93005 0.80274 0.90690 0.92063 0.75744 0.80002 0.83145 0.83510 0.81158 0.91848 0.90005 0.92399 0.90137 0.90911 0.90140 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 40. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.85 13.97 55.49 0.78 -28.07 16 2 C 0.01 0.31 5.50 -17.43 -0.10 0.21 16 3 Si 0.88 21.76 27.68 -169.99 -4.71 17.05 16 4 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 5 H -0.29 -7.47 7.11 56.52 0.40 -7.07 16 6 H -0.28 -6.39 6.61 56.52 0.37 -6.01 16 7 C -0.24 -6.48 9.74 -15.06 -0.15 -6.62 16 8 H 0.09 2.69 8.06 -52.49 -0.42 2.26 16 9 N -0.72 -15.91 4.38 -46.48 -0.20 -16.11 16 10 C 0.18 3.17 0.90 -131.01 -0.12 3.05 16 11 C 0.12 2.20 5.03 -4.04 -0.02 2.18 16 12 N -0.68 -12.71 5.38 -61.08 -0.33 -13.04 16 13 C 0.59 11.29 7.85 -12.10 -0.09 11.19 16 14 O -0.53 -11.14 16.94 5.37 0.09 -11.04 16 15 C -0.01 -0.17 7.17 -82.66 -0.59 -0.76 16 16 C -0.16 -2.32 10.77 -38.65 -0.42 -2.74 16 17 C 0.03 0.40 7.28 -36.41 -0.26 0.13 16 18 C -0.14 -1.40 6.45 -36.75 -0.24 -1.63 16 19 C -0.10 -0.88 10.17 -40.51 -0.41 -1.29 16 20 C -0.13 -0.91 10.15 -41.35 -0.42 -1.33 16 21 C -0.21 -1.33 11.21 29.15 0.33 -1.01 16 22 S 0.17 1.41 23.11 -107.50 -2.48 -1.08 16 23 O 0.14 1.96 11.21 15.78 0.18 2.14 16 24 N -0.32 -5.38 11.81 33.36 0.39 -4.98 16 25 C -0.15 -2.15 7.37 -25.92 -0.19 -2.34 16 26 C -0.13 -1.91 7.99 -25.92 -0.21 -2.11 16 27 C -0.15 -2.42 7.28 -25.92 -0.19 -2.61 16 28 H 0.26 7.75 8.31 -40.82 -0.34 7.41 16 29 H 0.36 7.94 5.80 -40.82 -0.24 7.70 16 30 H 0.07 1.56 8.13 -51.93 -0.42 1.14 16 31 H 0.06 0.99 7.95 -51.93 -0.41 0.57 16 32 H 0.41 7.60 7.88 -40.82 -0.32 7.28 16 33 H 0.18 2.22 8.06 -52.49 -0.42 1.80 16 34 H 0.15 1.12 8.06 -52.48 -0.42 0.70 16 35 H 0.15 0.65 8.06 -52.48 -0.42 0.23 16 36 H 0.17 0.63 8.06 -52.49 -0.42 0.21 16 37 H 0.06 0.92 8.09 -51.93 -0.42 0.50 16 38 H 0.08 1.05 7.97 -51.93 -0.41 0.63 16 39 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 40 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 41 H 0.07 1.05 8.10 -51.93 -0.42 0.63 16 42 H 0.08 1.53 7.83 -51.93 -0.41 1.13 16 LS Contribution 376.79 15.07 5.68 5.68 Total: -1.00 -32.61 376.79 -8.86 -41.47 By element: Atomic # 1 Polarization: 18.85 SS G_CDS: -5.18 Total: 13.67 kcal Atomic # 6 Polarization: -2.60 SS G_CDS: -3.08 Total: -5.68 kcal Atomic # 7 Polarization: -62.85 SS G_CDS: 0.64 Total: -62.21 kcal Atomic # 8 Polarization: -9.18 SS G_CDS: 0.27 Total: -8.91 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -4.71 Total: 17.05 kcal Atomic # 16 Polarization: 1.41 SS G_CDS: -2.48 Total: -1.08 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -32.61 -8.86 -41.47 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001673193535.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.947 kcal (2) G-P(sol) polarization free energy of solvation -32.605 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 112.342 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.863 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.468 kcal (6) G-S(sol) free energy of system = (1) + (5) 103.479 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.09 seconds