Wall clock time and date at job start Wed Apr 1 2020 04:31:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86802 * 120.00175 * 2 1 4 4 H 1.48493 * 109.46852 * 269.99621 * 3 2 1 5 5 H 1.48499 * 109.47283 * 29.99847 * 3 2 1 6 6 H 1.48502 * 109.46956 * 149.99684 * 3 2 1 7 7 C 1.38815 * 119.99481 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00452 * 0.02562 * 7 2 1 9 9 N 1.36942 * 119.99651 * 180.02562 * 7 2 1 10 10 C 1.46492 * 119.99991 * 174.42426 * 9 7 2 11 11 C 1.53000 * 112.85124 * 293.74427 * 10 9 7 12 12 N 1.46506 * 109.46857 * 311.21419 * 11 10 9 13 13 C 1.34776 * 119.99709 * 174.81316 * 12 11 10 14 14 O 1.21499 * 120.00362 * 359.97438 * 13 12 11 15 15 C 1.48345 * 119.99610 * 180.02562 * 13 12 11 16 16 C 1.41710 * 126.81266 * 179.70975 * 15 13 12 17 17 C 1.37151 * 103.79940 * 179.89027 * 16 15 13 18 18 C 1.47030 * 126.85581 * 180.11508 * 17 16 15 19 19 C 1.36199 * 125.33164 * 179.97438 * 18 17 16 20 20 C 1.37713 * 114.44270 * 179.79522 * 19 18 17 21 21 C 1.33736 * 115.19176 * 0.50001 * 20 19 18 22 22 S 1.75819 * 109.95937 * 359.72782 * 21 20 19 23 23 O 1.34563 * 106.28275 * 0.36750 * 17 16 15 24 24 N 1.20870 * 111.69582 * 359.75013 * 23 17 16 25 25 C 1.53786 * 113.61730 * 162.43502 * 10 9 7 26 26 C 1.53775 * 87.08242 * 270.88459 * 25 10 9 27 27 C 1.53781 * 87.08198 * 334.56649 * 26 25 10 28 28 H 0.97003 * 119.99553 * 359.97438 * 1 2 3 29 29 H 0.97001 * 120.00317 * 354.14351 * 9 7 2 30 30 H 1.08999 * 109.47342 * 71.21146 * 11 10 9 31 31 H 1.08999 * 109.47228 * 191.21324 * 11 10 9 32 32 H 0.96997 * 120.00050 * 354.81417 * 12 11 10 33 33 H 1.08001 * 128.09658 * 0.02562 * 16 15 13 34 34 H 1.08006 * 122.78068 * 359.96580 * 19 18 17 35 35 H 1.08005 * 122.40558 * 180.20701 * 20 19 18 36 36 H 1.07996 * 125.01606 * 179.73313 * 21 20 19 37 37 H 1.08995 * 113.60945 * 25.43732 * 25 10 9 38 38 H 1.08997 * 113.61503 * 156.33449 * 25 10 9 39 39 H 1.08998 * 113.61506 * 220.01678 * 26 25 10 40 40 H 1.08997 * 113.61590 * 89.11155 * 26 25 10 41 41 H 1.08998 * 113.61637 * 270.88469 * 27 26 25 42 42 H 1.09001 * 113.61760 * 139.98233 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0463 -1.4000 5 1 1.4478 2.6527 0.7000 6 1 3.5478 1.4401 0.7001 7 6 2.0102 -1.2022 0.0005 8 1 1.4702 -2.1375 0.0005 9 7 3.3796 -1.2023 0.0011 10 6 4.1120 -2.4649 0.1249 11 6 3.9169 -3.1339 1.4870 12 7 4.1355 -2.1498 2.5501 13 6 3.9151 -2.4870 3.8362 14 8 3.5346 -3.6069 4.1140 15 6 4.1359 -1.4904 4.9126 16 6 3.9451 -1.6859 6.3031 17 6 4.2854 -0.4766 6.8533 18 6 4.2716 -0.1216 8.2800 19 6 4.6170 1.0918 8.7932 20 6 4.5175 1.1800 10.1639 21 6 4.1095 0.0643 10.7780 22 16 3.8138 -1.1997 9.5922 23 8 4.6289 0.3219 5.8261 24 7 4.5411 -0.2514 4.7657 25 6 5.5836 -2.3689 -0.3112 26 6 5.1049 -2.7240 -1.7287 27 6 3.9036 -3.4172 -1.0645 28 1 -0.4850 0.8401 0.0004 29 1 3.8647 -0.3667 -0.0846 30 1 2.9021 -3.5254 1.5575 31 1 4.6300 -3.9510 1.5960 32 1 4.4389 -1.2556 2.3283 33 1 3.6121 -2.5790 6.8109 34 1 4.9395 1.9174 8.1760 35 1 4.7566 2.0839 10.7046 36 1 3.9807 -0.0442 11.8448 37 1 5.9985 -1.3644 -0.2292 38 1 6.2224 -3.1297 0.1373 39 1 5.7688 -3.4100 -2.2548 40 1 4.8314 -1.8554 -2.3276 41 1 4.0831 -4.4646 -0.8219 42 1 2.9623 -3.2589 -1.5908 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001673193535.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:31:08 Heat of formation + Delta-G solvation = 81.878881 kcal Electronic energy + Delta-G solvation = -27265.501228 eV Core-core repulsion = 23341.291665 eV Total energy + Delta-G solvation = -3924.209563 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.109 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -46.25893 -41.09603 -39.97968 -38.71125 -35.66297 -35.30057 -35.21945 -33.92378 -32.58261 -29.76762 -29.30711 -26.71469 -26.29090 -25.57712 -25.05132 -24.00932 -22.93929 -21.73657 -20.59256 -19.92329 -19.56745 -19.38548 -19.06076 -18.10694 -17.71665 -17.11097 -16.58997 -16.42334 -16.34737 -16.04155 -15.76954 -15.28249 -14.97329 -14.76648 -14.56358 -14.42331 -14.22232 -14.10070 -13.59738 -13.40700 -13.28019 -13.12953 -13.02858 -12.70189 -12.54095 -12.28961 -11.84117 -11.82929 -11.75385 -11.73997 -11.62733 -11.49474 -11.45699 -11.00136 -10.86102 -10.17275 -9.53190 -9.36504 -9.36063 -8.03770 -5.38476 -0.75286 0.01513 0.27710 0.80165 0.93421 1.33298 1.36550 1.42832 1.75345 1.82829 1.90788 2.01962 2.44803 2.73152 3.21559 3.28710 3.41121 3.65577 3.69316 3.88890 3.92073 3.99018 4.05484 4.14365 4.20825 4.46586 4.54741 4.59960 4.63734 4.67583 4.80029 4.88938 4.93946 5.05466 5.10637 5.19584 5.25546 5.32127 5.39235 5.41885 5.61518 5.81133 6.19897 6.26283 6.76621 6.92134 7.05774 7.79720 7.97838 9.17778 Molecular weight = 347.11amu Principal moments of inertia in cm(-1) A = 0.013426 B = 0.002777 C = 0.002512 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2085.020854 B =10079.409751 C =11142.064524 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.984 5.984 2 C -0.062 4.062 3 Si 0.945 3.055 4 H -0.277 1.277 5 H -0.305 1.305 6 H -0.248 1.248 7 C -0.210 4.210 8 H 0.053 0.947 9 N -0.724 5.724 10 C 0.156 3.844 11 C 0.126 3.874 12 N -0.682 5.682 13 C 0.589 3.411 14 O -0.560 6.560 15 C -0.032 4.032 16 C -0.180 4.180 17 C 0.055 3.945 18 C -0.181 4.181 19 C -0.087 4.087 20 C -0.146 4.146 21 C -0.187 4.187 22 S 0.169 5.831 23 O 0.141 5.859 24 N -0.343 5.343 25 C -0.128 4.128 26 C -0.120 4.120 27 C -0.147 4.147 28 H 0.255 0.745 29 H 0.368 0.632 30 H 0.038 0.962 31 H 0.089 0.911 32 H 0.408 0.592 33 H 0.194 0.806 34 H 0.159 0.841 35 H 0.176 0.824 36 H 0.203 0.797 37 H 0.070 0.930 38 H 0.111 0.889 39 H 0.090 0.910 40 H 0.066 0.934 41 H 0.098 0.902 42 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.409 -0.152 20.370 26.158 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.634 5.634 2 C -0.253 4.253 3 Si 0.773 3.227 4 H -0.203 1.203 5 H -0.232 1.232 6 H -0.173 1.173 7 C -0.341 4.341 8 H 0.071 0.929 9 N -0.367 5.367 10 C 0.066 3.934 11 C 0.000 4.000 12 N -0.331 5.331 13 C 0.373 3.627 14 O -0.438 6.438 15 C -0.189 4.189 16 C -0.204 4.204 17 C -0.009 4.009 18 C -0.299 4.299 19 C -0.121 4.121 20 C -0.175 4.175 21 C -0.323 4.323 22 S 0.435 5.565 23 O 0.062 5.938 24 N -0.041 5.041 25 C -0.165 4.165 26 C -0.157 4.157 27 C -0.187 4.187 28 H 0.064 0.936 29 H 0.202 0.798 30 H 0.056 0.944 31 H 0.107 0.893 32 H 0.243 0.757 33 H 0.211 0.789 34 H 0.177 0.823 35 H 0.193 0.807 36 H 0.220 0.780 37 H 0.089 0.911 38 H 0.129 0.871 39 H 0.108 0.892 40 H 0.084 0.916 41 H 0.116 0.884 42 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 15.760 -1.879 19.483 25.130 hybrid contribution -0.249 2.375 -0.094 2.390 sum 15.511 0.496 19.389 24.835 Atomic orbital electron populations 1.69887 1.07183 1.26346 1.60033 1.25420 0.95920 1.00909 1.03022 0.85552 0.78893 0.80201 0.78037 1.20286 1.23214 1.17278 1.18747 0.82209 0.92905 1.40215 0.92888 1.42325 1.02275 1.03564 1.88511 1.21186 0.93806 0.87358 0.91097 1.21905 1.00417 0.90849 0.86812 1.45627 1.65366 1.17206 1.04871 1.17088 0.77831 0.85592 0.82144 1.90735 1.48268 1.21522 1.83266 1.23285 1.06664 0.92763 0.96140 1.22719 1.06494 1.00192 0.90978 1.21579 1.01084 0.89105 0.89181 1.21873 1.16530 1.01031 0.90491 1.21099 0.98345 0.96088 0.96534 1.20327 1.03306 1.00911 0.92954 1.26447 1.05446 0.95739 1.04698 1.84407 1.64163 1.13919 0.94044 1.84875 1.62434 1.36629 1.09889 1.74173 1.17253 1.08014 1.04710 1.23223 0.93568 1.02936 0.96819 1.22593 0.96869 1.00344 0.95910 1.23302 0.98969 0.99064 0.97376 0.93622 0.79821 0.94384 0.89327 0.75666 0.78890 0.82339 0.80679 0.78005 0.91134 0.87081 0.89165 0.91572 0.88384 0.93681 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -63.98 13.97 21.65 0.30 -63.68 16 2 C -0.06 -3.63 5.50 84.86 0.47 -3.16 16 3 Si 0.95 45.70 27.68 68.60 1.90 47.60 16 4 H -0.28 -12.95 7.11 99.48 0.71 -12.25 16 5 H -0.30 -15.36 7.11 99.48 0.71 -14.65 16 6 H -0.25 -10.75 6.61 99.48 0.66 -10.09 16 7 C -0.21 -11.65 9.74 84.03 0.82 -10.83 16 8 H 0.05 3.32 8.06 -2.91 -0.02 3.29 16 9 N -0.72 -31.78 4.38 -300.96 -1.32 -33.09 16 10 C 0.16 5.48 0.90 4.13 0.00 5.48 16 11 C 0.13 4.58 5.03 86.38 0.43 5.01 16 12 N -0.68 -25.62 5.38 -465.47 -2.50 -28.12 16 13 C 0.59 23.01 7.85 86.93 0.68 23.69 16 14 O -0.56 -24.09 16.94 -3.71 -0.06 -24.15 16 15 C -0.03 -1.10 7.17 42.79 0.31 -0.79 16 16 C -0.18 -5.15 10.77 22.87 0.25 -4.91 16 17 C 0.06 1.39 7.28 24.32 0.18 1.57 16 18 C -0.18 -3.47 6.45 24.10 0.16 -3.32 16 19 C -0.09 -1.28 10.17 21.67 0.22 -1.06 16 20 C -0.15 -1.44 10.15 21.12 0.21 -1.22 16 21 C -0.19 -1.68 11.21 66.80 0.75 -0.93 16 22 S 0.17 2.43 23.11 -56.49 -1.31 1.12 16 23 O 0.14 4.02 11.21 66.64 0.75 4.76 16 24 N -0.34 -11.49 11.81 -48.87 -0.58 -12.07 16 25 C -0.13 -3.32 7.37 31.12 0.23 -3.09 16 26 C -0.12 -3.18 7.99 31.12 0.25 -2.93 16 27 C -0.15 -4.75 7.28 31.12 0.23 -4.52 16 28 H 0.25 15.94 8.31 -92.71 -0.77 15.17 16 29 H 0.37 15.56 5.80 -92.71 -0.54 15.03 16 30 H 0.04 1.65 8.13 -2.39 -0.02 1.63 16 31 H 0.09 2.73 7.95 -2.39 -0.02 2.71 16 32 H 0.41 15.12 7.88 -92.71 -0.73 14.39 16 33 H 0.19 4.84 8.06 -2.91 -0.02 4.81 16 34 H 0.16 1.99 8.06 -2.91 -0.02 1.97 16 35 H 0.18 0.75 8.06 -2.91 -0.02 0.72 16 36 H 0.20 0.51 8.06 -2.91 -0.02 0.48 16 37 H 0.07 1.78 8.09 -2.39 -0.02 1.76 16 38 H 0.11 2.31 7.97 -2.39 -0.02 2.29 16 39 H 0.09 1.86 8.14 -2.39 -0.02 1.84 16 40 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 41 H 0.10 2.64 8.10 -2.39 -0.02 2.63 16 42 H 0.04 1.76 7.83 -2.39 -0.02 1.74 16 Total: -1.00 -75.31 376.79 2.12 -73.19 By element: Atomic # 1 Polarization: 35.68 SS G_CDS: -0.24 Total: 35.44 kcal Atomic # 6 Polarization: -6.18 SS G_CDS: 5.18 Total: -1.00 kcal Atomic # 7 Polarization: -132.87 SS G_CDS: -4.10 Total: -136.96 kcal Atomic # 8 Polarization: -20.07 SS G_CDS: 0.68 Total: -19.39 kcal Atomic # 14 Polarization: 45.70 SS G_CDS: 1.90 Total: 47.60 kcal Atomic # 16 Polarization: 2.43 SS G_CDS: -1.31 Total: 1.12 kcal Total: -75.31 2.12 -73.19 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001673193535.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 155.066 kcal (2) G-P(sol) polarization free energy of solvation -75.309 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.757 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.121 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.187 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.879 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds