Wall clock time and date at job start Wed Apr 1 2020 04:47:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86800 * 120.00194 * 2 1 4 4 H 1.48494 * 109.47293 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.46886 * 299.99423 * 3 2 1 6 6 H 1.48496 * 109.47002 * 59.99108 * 3 2 1 7 7 C 1.38816 * 119.99787 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99593 * 180.02562 * 7 2 1 9 9 N 1.36940 * 119.99880 * 0.02562 * 7 2 1 10 10 C 1.46498 * 119.99450 * 179.97438 * 9 7 2 11 11 C 1.53001 * 109.46735 * 180.02562 * 10 9 7 12 12 H 1.08998 * 112.84794 * 316.19088 * 11 10 9 13 13 C 1.53778 * 113.69389 * 87.46692 * 11 10 9 14 14 C 1.53778 * 87.08449 * 139.99094 * 13 11 10 15 15 H 1.08993 * 113.61229 * 220.02023 * 14 13 11 16 16 N 1.46501 * 113.61560 * 89.11214 * 14 13 11 17 17 C 1.34781 * 119.99552 * 107.49938 * 16 14 13 18 18 O 1.21636 * 120.00120 * 0.02562 * 17 16 14 19 19 C 1.47303 * 119.99765 * 179.97438 * 17 16 14 20 20 C 1.35167 * 122.41676 * 180.02562 * 19 17 16 21 21 S 1.71001 * 109.16071 * 179.97438 * 20 19 17 22 22 C 1.75995 * 90.59469 * 359.97438 * 21 20 19 23 23 C 1.47146 * 125.32765 * 179.97438 * 22 21 20 24 24 C 1.36239 * 125.95645 * 359.69609 * 23 22 21 25 25 C 1.40770 * 106.72155 * 179.84924 * 24 23 22 26 26 C 1.34836 * 107.06879 * 0.40948 * 25 24 23 27 27 O 1.34243 * 108.72239 * 359.74515 * 26 25 24 28 28 N 1.30117 * 109.34231 * 359.76242 * 22 21 20 29 29 C 1.53784 * 87.08081 * 334.56700 * 14 13 11 30 30 H 0.96998 * 120.00052 * 0.02562 * 1 2 3 31 31 H 0.96995 * 119.99838 * 0.02562 * 9 7 2 32 32 H 1.08997 * 109.47376 * 60.00112 * 10 9 7 33 33 H 1.09003 * 109.47215 * 300.00139 * 10 9 7 34 34 H 1.08999 * 113.61111 * 254.54157 * 13 11 10 35 35 H 1.08999 * 113.61280 * 25.35540 * 13 11 10 36 36 H 0.96998 * 120.00259 * 287.50678 * 16 14 13 37 37 H 1.07999 * 125.41689 * 359.97438 * 20 19 17 38 38 H 1.07997 * 126.64199 * 359.97438 * 24 23 22 39 39 H 1.07999 * 126.46471 * 180.11834 * 25 24 23 40 40 H 1.08001 * 125.64077 * 179.76591 * 26 25 24 41 41 H 1.09004 * 113.61451 * 270.88641 * 29 14 13 42 42 H 1.08994 * 113.61477 * 139.97943 * 29 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8916 2.3963 -1.2126 6 1 1.8914 2.3965 1.2124 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 2.0580 -3.6568 0.0005 11 6 1.0637 -4.8197 -0.0001 12 1 0.2375 -4.6705 0.6950 13 6 0.6154 -5.2486 -1.4072 14 6 0.7036 -6.7002 -0.9073 15 1 1.1213 -7.3898 -1.6407 16 7 -0.5393 -7.1906 -0.3064 17 6 -1.2969 -8.0900 -0.9649 18 8 -0.9485 -8.4949 -2.0577 19 6 -2.5463 -8.5836 -0.3605 20 6 -3.3426 -9.4853 -0.9769 21 16 -4.6916 -9.8170 0.0203 22 6 -4.0905 -8.6969 1.2374 23 6 -4.7515 -8.3958 2.5171 24 6 -5.9266 -8.9281 2.9552 25 6 -6.1788 -8.3662 4.2210 26 6 -5.1629 -7.5209 4.4883 27 8 -4.3029 -7.5411 3.4577 28 7 -2.9678 -8.1801 0.8305 29 6 1.7303 -6.2001 0.1227 30 1 -0.4850 0.8400 -0.0004 31 1 0.3555 -2.3880 -0.0002 32 1 2.6846 -3.7146 0.8905 33 1 2.6847 -3.7145 -0.8894 34 1 -0.3977 -4.9338 -1.6574 35 1 1.3379 -5.0094 -2.1874 36 1 -0.8170 -6.8679 0.5651 37 1 -3.1564 -9.9260 -1.9451 38 1 -6.5439 -9.6443 2.4334 39 1 -7.0284 -8.5698 4.8559 40 1 -5.0581 -6.9261 5.3836 41 1 2.7582 -6.2224 -0.2392 42 1 1.6172 -6.6535 1.1074 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001675781883.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:47:07 Heat of formation + Delta-G solvation = 62.644022 kcal Electronic energy + Delta-G solvation = -26323.612260 eV Core-core repulsion = 22398.568611 eV Total energy + Delta-G solvation = -3925.043649 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.109 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.95158 -40.79891 -39.45601 -37.98164 -34.51263 -33.59457 -33.10701 -32.15985 -30.79514 -29.37615 -27.17441 -25.93769 -25.45272 -23.95746 -22.98670 -22.32632 -21.36477 -21.02214 -19.87619 -19.18566 -19.00368 -17.85425 -16.99680 -16.83680 -16.57992 -16.09716 -15.66257 -15.50233 -14.82791 -14.59652 -14.29646 -14.06215 -13.85194 -13.74626 -13.41326 -13.37618 -13.27083 -12.95931 -12.73514 -12.45860 -12.28632 -12.08240 -11.61156 -11.00140 -10.81630 -10.63995 -10.55487 -10.42439 -10.30861 -10.29112 -10.18918 -10.03577 -9.80683 -9.78070 -9.56742 -8.99896 -8.80615 -8.49599 -6.85163 -5.71378 -2.99422 -0.26227 0.46025 1.03157 1.06537 1.83012 2.29374 2.60093 3.03678 3.16425 3.45490 3.46263 3.51584 3.54071 4.30776 4.45633 4.60525 4.62053 4.71644 4.76536 4.79269 4.87140 5.16824 5.19469 5.24693 5.26442 5.40124 5.53369 5.62776 5.76718 5.91853 5.93004 5.98576 6.06268 6.16866 6.29029 6.35246 6.47547 6.54798 6.65570 6.84162 6.94829 6.99623 7.47613 7.74956 8.06390 8.47776 9.58664 10.18570 10.53007 11.51697 Molecular weight = 347.11amu Principal moments of inertia in cm(-1) A = 0.010434 B = 0.002327 C = 0.002007 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2682.779442 B =12031.820155 C =13944.955444 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.016 4.016 3 Si 0.906 3.094 4 H -0.281 1.281 5 H -0.292 1.292 6 H -0.292 1.292 7 C -0.237 4.237 8 H 0.070 0.930 9 N -0.732 5.732 10 C 0.163 3.837 11 C -0.114 4.114 12 H 0.088 0.912 13 C -0.138 4.138 14 C 0.114 3.886 15 H 0.101 0.899 16 N -0.688 5.688 17 C 0.595 3.405 18 O -0.535 6.535 19 C 0.018 3.982 20 C -0.216 4.216 21 S 0.227 5.773 22 C 0.108 3.892 23 C 0.047 3.953 24 C -0.167 4.167 25 C -0.215 4.215 26 C -0.010 4.010 27 O -0.148 6.148 28 N -0.423 5.423 29 C -0.137 4.137 30 H 0.254 0.746 31 H 0.383 0.617 32 H 0.018 0.982 33 H 0.020 0.980 34 H 0.068 0.932 35 H 0.092 0.908 36 H 0.412 0.588 37 H 0.198 0.802 38 H 0.156 0.844 39 H 0.157 0.843 40 H 0.212 0.788 41 H 0.096 0.904 42 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.976 -25.964 5.839 30.059 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.212 4.212 3 Si 0.738 3.262 4 H -0.206 1.206 5 H -0.219 1.219 6 H -0.219 1.219 7 C -0.368 4.368 8 H 0.088 0.912 9 N -0.376 5.376 10 C 0.035 3.965 11 C -0.132 4.132 12 H 0.106 0.894 13 C -0.177 4.177 14 C 0.009 3.991 15 H 0.119 0.881 16 N -0.338 5.338 17 C 0.378 3.622 18 O -0.412 6.412 19 C -0.118 4.118 20 C -0.358 4.358 21 S 0.485 5.515 22 C -0.167 4.167 23 C -0.007 4.007 24 C -0.190 4.190 25 C -0.235 4.235 26 C -0.080 4.080 27 O -0.042 6.042 28 N -0.138 5.138 29 C -0.176 4.176 30 H 0.064 0.936 31 H 0.217 0.783 32 H 0.036 0.964 33 H 0.038 0.962 34 H 0.087 0.913 35 H 0.111 0.889 36 H 0.248 0.752 37 H 0.215 0.785 38 H 0.173 0.827 39 H 0.175 0.825 40 H 0.228 0.772 41 H 0.114 0.886 42 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -13.831 -26.234 5.203 30.110 hybrid contribution 0.569 1.512 0.134 1.621 sum -13.262 -24.722 5.338 28.558 Atomic orbital electron populations 1.69677 1.05095 1.25413 1.58083 1.24746 0.95527 0.97675 1.03270 0.86121 0.78771 0.84210 0.77146 1.20584 1.21916 1.21921 1.19297 0.91044 0.84272 1.42186 0.91189 1.42367 1.05876 1.00015 1.89349 1.20634 0.92983 0.85200 0.97658 1.22768 0.99160 0.94221 0.97094 0.89357 1.23413 1.02565 0.93882 0.97790 1.22017 0.84188 0.96177 0.96758 0.88062 1.45518 1.22996 1.42588 1.22654 1.17037 0.81742 0.79074 0.84391 1.90817 1.71494 1.59045 1.19864 1.20184 0.99562 1.00453 0.91615 1.26692 0.98814 1.03233 1.07073 1.83726 1.20974 1.38887 1.07909 1.24299 0.94896 1.00645 0.96832 1.18819 0.95159 0.97828 0.88891 1.21815 0.96231 1.03680 0.97273 1.21758 1.02081 1.01667 0.97945 1.24443 0.89867 1.01793 0.91942 1.84225 1.44794 1.50830 1.24354 1.67182 1.11003 1.23337 1.12273 1.23314 0.98759 0.96604 0.98908 0.93646 0.78316 0.96373 0.96199 0.91293 0.88945 0.75199 0.78524 0.82668 0.82497 0.77158 0.88554 0.91161 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.00 13.06 55.49 0.72 -28.28 16 2 C -0.02 -0.49 5.50 -17.43 -0.10 -0.58 16 3 Si 0.91 22.93 29.55 -169.99 -5.02 17.91 16 4 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 5 H -0.29 -7.41 7.11 56.52 0.40 -7.01 16 6 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 7 C -0.24 -6.83 9.99 -15.06 -0.15 -6.98 16 8 H 0.07 1.96 7.83 -52.49 -0.41 1.55 16 9 N -0.73 -19.20 5.60 -59.91 -0.34 -19.53 16 10 C 0.16 3.36 6.10 -4.04 -0.02 3.33 16 11 C -0.11 -1.88 3.63 -89.81 -0.33 -2.21 16 12 H 0.09 1.54 8.14 -51.93 -0.42 1.11 16 13 C -0.14 -2.19 7.43 -25.92 -0.19 -2.38 16 14 C 0.11 1.57 4.32 -67.12 -0.29 1.28 16 15 H 0.10 1.41 7.46 -51.93 -0.39 1.03 16 16 N -0.69 -9.49 5.26 -54.13 -0.28 -9.78 16 17 C 0.59 8.63 7.79 -12.57 -0.10 8.53 16 18 O -0.54 -8.92 16.25 5.25 0.09 -8.83 16 19 C 0.02 0.23 6.64 -84.93 -0.56 -0.33 16 20 C -0.22 -2.07 10.56 29.64 0.31 -1.76 16 21 S 0.23 1.61 22.93 -107.50 -2.46 -0.85 16 22 C 0.11 1.14 7.46 -14.66 -0.11 1.03 16 23 C 0.05 0.47 7.24 -36.69 -0.27 0.20 16 24 C -0.17 -1.22 10.63 -39.34 -0.42 -1.64 16 25 C -0.22 -1.36 10.88 -39.83 -0.43 -1.79 16 26 C -0.01 -0.07 12.08 29.53 0.36 0.29 16 27 O -0.15 -1.60 10.67 4.58 0.05 -1.55 16 28 N -0.42 -5.37 10.08 -8.28 -0.08 -5.46 16 29 C -0.14 -1.80 7.39 -25.91 -0.19 -1.99 16 30 H 0.25 7.59 8.31 -40.82 -0.34 7.25 16 31 H 0.38 10.61 7.67 -40.82 -0.31 10.30 16 32 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 33 H 0.02 0.42 7.85 -51.93 -0.41 0.01 16 34 H 0.07 1.19 8.14 -51.93 -0.42 0.76 16 35 H 0.09 1.45 7.90 -51.93 -0.41 1.04 16 36 H 0.41 5.48 8.18 -40.82 -0.33 5.15 16 37 H 0.20 1.59 7.99 -52.49 -0.42 1.17 16 38 H 0.16 0.73 8.06 -52.49 -0.42 0.31 16 39 H 0.16 0.58 8.06 -52.49 -0.42 0.15 16 40 H 0.21 0.72 8.06 -52.49 -0.42 0.30 16 41 H 0.10 1.16 8.10 -51.93 -0.42 0.74 16 42 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 LS Contribution 380.40 15.07 5.73 5.73 Total: -1.00 -35.56 380.40 -9.29 -44.85 By element: Atomic # 1 Polarization: 16.00 SS G_CDS: -5.20 Total: 10.80 kcal Atomic # 6 Polarization: -2.51 SS G_CDS: -2.49 Total: -5.00 kcal Atomic # 7 Polarization: -63.07 SS G_CDS: 0.02 Total: -63.05 kcal Atomic # 8 Polarization: -10.52 SS G_CDS: 0.13 Total: -10.39 kcal Atomic # 14 Polarization: 22.93 SS G_CDS: -5.02 Total: 17.91 kcal Atomic # 16 Polarization: 1.61 SS G_CDS: -2.46 Total: -0.85 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -35.56 -9.29 -44.85 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001675781883.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.490 kcal (2) G-P(sol) polarization free energy of solvation -35.557 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.933 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.289 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.846 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.644 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds