Wall clock time and date at job start Wed Apr 1 2020 04:47:07
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31619 * 1
3 3 Si 1.86800 * 120.00194 * 2 1
4 4 H 1.48494 * 109.47293 * 179.97438 * 3 2 1
5 5 H 1.48503 * 109.46886 * 299.99423 * 3 2 1
6 6 H 1.48496 * 109.47002 * 59.99108 * 3 2 1
7 7 C 1.38816 * 119.99787 * 179.97438 * 2 1 3
8 8 H 1.08002 * 119.99593 * 180.02562 * 7 2 1
9 9 N 1.36940 * 119.99880 * 0.02562 * 7 2 1
10 10 C 1.46498 * 119.99450 * 179.97438 * 9 7 2
11 11 C 1.53001 * 109.46735 * 180.02562 * 10 9 7
12 12 H 1.08998 * 112.84794 * 316.19088 * 11 10 9
13 13 C 1.53778 * 113.69389 * 87.46692 * 11 10 9
14 14 C 1.53778 * 87.08449 * 139.99094 * 13 11 10
15 15 H 1.08993 * 113.61229 * 220.02023 * 14 13 11
16 16 N 1.46501 * 113.61560 * 89.11214 * 14 13 11
17 17 C 1.34781 * 119.99552 * 107.49938 * 16 14 13
18 18 O 1.21636 * 120.00120 * 0.02562 * 17 16 14
19 19 C 1.47303 * 119.99765 * 179.97438 * 17 16 14
20 20 C 1.35167 * 122.41676 * 180.02562 * 19 17 16
21 21 S 1.71001 * 109.16071 * 179.97438 * 20 19 17
22 22 C 1.75995 * 90.59469 * 359.97438 * 21 20 19
23 23 C 1.47146 * 125.32765 * 179.97438 * 22 21 20
24 24 C 1.36239 * 125.95645 * 359.69609 * 23 22 21
25 25 C 1.40770 * 106.72155 * 179.84924 * 24 23 22
26 26 C 1.34836 * 107.06879 * 0.40948 * 25 24 23
27 27 O 1.34243 * 108.72239 * 359.74515 * 26 25 24
28 28 N 1.30117 * 109.34231 * 359.76242 * 22 21 20
29 29 C 1.53784 * 87.08081 * 334.56700 * 14 13 11
30 30 H 0.96998 * 120.00052 * 0.02562 * 1 2 3
31 31 H 0.96995 * 119.99838 * 0.02562 * 9 7 2
32 32 H 1.08997 * 109.47376 * 60.00112 * 10 9 7
33 33 H 1.09003 * 109.47215 * 300.00139 * 10 9 7
34 34 H 1.08999 * 113.61111 * 254.54157 * 13 11 10
35 35 H 1.08999 * 113.61280 * 25.35540 * 13 11 10
36 36 H 0.96998 * 120.00259 * 287.50678 * 16 14 13
37 37 H 1.07999 * 125.41689 * 359.97438 * 20 19 17
38 38 H 1.07997 * 126.64199 * 359.97438 * 24 23 22
39 39 H 1.07999 * 126.46471 * 180.11834 * 25 24 23
40 40 H 1.08001 * 125.64077 * 179.76591 * 26 25 24
41 41 H 1.09004 * 113.61451 * 270.88641 * 29 14 13
42 42 H 1.08994 * 113.61477 * 139.97943 * 29 14 13
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3162 0.0000 0.0000
3 14 2.2502 1.6177 0.0000
4 1 3.7102 1.3464 0.0006
5 1 1.8916 2.3963 -1.2126
6 1 1.8914 2.3965 1.2124
7 6 2.0102 -1.2022 0.0005
8 1 3.0902 -1.2022 0.0010
9 7 1.3255 -2.3881 0.0005
10 6 2.0580 -3.6568 0.0005
11 6 1.0637 -4.8197 -0.0001
12 1 0.2375 -4.6705 0.6950
13 6 0.6154 -5.2486 -1.4072
14 6 0.7036 -6.7002 -0.9073
15 1 1.1213 -7.3898 -1.6407
16 7 -0.5393 -7.1906 -0.3064
17 6 -1.2969 -8.0900 -0.9649
18 8 -0.9485 -8.4949 -2.0577
19 6 -2.5463 -8.5836 -0.3605
20 6 -3.3426 -9.4853 -0.9769
21 16 -4.6916 -9.8170 0.0203
22 6 -4.0905 -8.6969 1.2374
23 6 -4.7515 -8.3958 2.5171
24 6 -5.9266 -8.9281 2.9552
25 6 -6.1788 -8.3662 4.2210
26 6 -5.1629 -7.5209 4.4883
27 8 -4.3029 -7.5411 3.4577
28 7 -2.9678 -8.1801 0.8305
29 6 1.7303 -6.2001 0.1227
30 1 -0.4850 0.8400 -0.0004
31 1 0.3555 -2.3880 -0.0002
32 1 2.6846 -3.7146 0.8905
33 1 2.6847 -3.7145 -0.8894
34 1 -0.3977 -4.9338 -1.6574
35 1 1.3379 -5.0094 -2.1874
36 1 -0.8170 -6.8679 0.5651
37 1 -3.1564 -9.9260 -1.9451
38 1 -6.5439 -9.6443 2.4334
39 1 -7.0284 -8.5698 4.8559
40 1 -5.0581 -6.9261 5.3836
41 1 2.7582 -6.2224 -0.2392
42 1 1.6172 -6.6535 1.1074
RHF calculation, no. of doubly occupied orbitals= 61
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001675781883.mol2 42
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 04:47:07
Heat of formation + Delta-G solvation = 62.644022 kcal
Electronic energy + Delta-G solvation = -26323.612260 eV
Core-core repulsion = 22398.568611 eV
Total energy + Delta-G solvation = -3925.043649 eV
No. of doubly occupied orbitals = 61
Molecular weight
(most abundant/longest-lived isotopes) = 347.109 amu
Computer time = 0.66 seconds
Orbital eigenvalues (eV)
-42.95158 -40.79891 -39.45601 -37.98164 -34.51263 -33.59457 -33.10701 -32.15985
-30.79514 -29.37615 -27.17441 -25.93769 -25.45272 -23.95746 -22.98670 -22.32632
-21.36477 -21.02214 -19.87619 -19.18566 -19.00368 -17.85425 -16.99680 -16.83680
-16.57992 -16.09716 -15.66257 -15.50233 -14.82791 -14.59652 -14.29646 -14.06215
-13.85194 -13.74626 -13.41326 -13.37618 -13.27083 -12.95931 -12.73514 -12.45860
-12.28632 -12.08240 -11.61156 -11.00140 -10.81630 -10.63995 -10.55487 -10.42439
-10.30861 -10.29112 -10.18918 -10.03577 -9.80683 -9.78070 -9.56742 -8.99896
-8.80615 -8.49599 -6.85163 -5.71378 -2.99422 -0.26227 0.46025 1.03157
1.06537 1.83012 2.29374 2.60093 3.03678 3.16425 3.45490 3.46263
3.51584 3.54071 4.30776 4.45633 4.60525 4.62053 4.71644 4.76536
4.79269 4.87140 5.16824 5.19469 5.24693 5.26442 5.40124 5.53369
5.62776 5.76718 5.91853 5.93004 5.98576 6.06268 6.16866 6.29029
6.35246 6.47547 6.54798 6.65570 6.84162 6.94829 6.99623 7.47613
7.74956 8.06390 8.47776 9.58664 10.18570 10.53007 11.51697
Molecular weight = 347.11amu
Principal moments of inertia in cm(-1)
A = 0.010434 B = 0.002327 C = 0.002007
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2682.779442 B =12031.820155 C =13944.955444
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.934 5.934
2 C -0.016 4.016
3 Si 0.906 3.094
4 H -0.281 1.281
5 H -0.292 1.292
6 H -0.292 1.292
7 C -0.237 4.237
8 H 0.070 0.930
9 N -0.732 5.732
10 C 0.163 3.837
11 C -0.114 4.114
12 H 0.088 0.912
13 C -0.138 4.138
14 C 0.114 3.886
15 H 0.101 0.899
16 N -0.688 5.688
17 C 0.595 3.405
18 O -0.535 6.535
19 C 0.018 3.982
20 C -0.216 4.216
21 S 0.227 5.773
22 C 0.108 3.892
23 C 0.047 3.953
24 C -0.167 4.167
25 C -0.215 4.215
26 C -0.010 4.010
27 O -0.148 6.148
28 N -0.423 5.423
29 C -0.137 4.137
30 H 0.254 0.746
31 H 0.383 0.617
32 H 0.018 0.982
33 H 0.020 0.980
34 H 0.068 0.932
35 H 0.092 0.908
36 H 0.412 0.588
37 H 0.198 0.802
38 H 0.156 0.844
39 H 0.157 0.843
40 H 0.212 0.788
41 H 0.096 0.904
42 H 0.070 0.930
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -13.976 -25.964 5.839 30.059
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.583 5.583
2 C -0.212 4.212
3 Si 0.738 3.262
4 H -0.206 1.206
5 H -0.219 1.219
6 H -0.219 1.219
7 C -0.368 4.368
8 H 0.088 0.912
9 N -0.376 5.376
10 C 0.035 3.965
11 C -0.132 4.132
12 H 0.106 0.894
13 C -0.177 4.177
14 C 0.009 3.991
15 H 0.119 0.881
16 N -0.338 5.338
17 C 0.378 3.622
18 O -0.412 6.412
19 C -0.118 4.118
20 C -0.358 4.358
21 S 0.485 5.515
22 C -0.167 4.167
23 C -0.007 4.007
24 C -0.190 4.190
25 C -0.235 4.235
26 C -0.080 4.080
27 O -0.042 6.042
28 N -0.138 5.138
29 C -0.176 4.176
30 H 0.064 0.936
31 H 0.217 0.783
32 H 0.036 0.964
33 H 0.038 0.962
34 H 0.087 0.913
35 H 0.111 0.889
36 H 0.248 0.752
37 H 0.215 0.785
38 H 0.173 0.827
39 H 0.175 0.825
40 H 0.228 0.772
41 H 0.114 0.886
42 H 0.088 0.912
Dipole moment (debyes) X Y Z Total
from point charges -13.831 -26.234 5.203 30.110
hybrid contribution 0.569 1.512 0.134 1.621
sum -13.262 -24.722 5.338 28.558
Atomic orbital electron populations
1.69677 1.05095 1.25413 1.58083 1.24746 0.95527 0.97675 1.03270
0.86121 0.78771 0.84210 0.77146 1.20584 1.21916 1.21921 1.19297
0.91044 0.84272 1.42186 0.91189 1.42367 1.05876 1.00015 1.89349
1.20634 0.92983 0.85200 0.97658 1.22768 0.99160 0.94221 0.97094
0.89357 1.23413 1.02565 0.93882 0.97790 1.22017 0.84188 0.96177
0.96758 0.88062 1.45518 1.22996 1.42588 1.22654 1.17037 0.81742
0.79074 0.84391 1.90817 1.71494 1.59045 1.19864 1.20184 0.99562
1.00453 0.91615 1.26692 0.98814 1.03233 1.07073 1.83726 1.20974
1.38887 1.07909 1.24299 0.94896 1.00645 0.96832 1.18819 0.95159
0.97828 0.88891 1.21815 0.96231 1.03680 0.97273 1.21758 1.02081
1.01667 0.97945 1.24443 0.89867 1.01793 0.91942 1.84225 1.44794
1.50830 1.24354 1.67182 1.11003 1.23337 1.12273 1.23314 0.98759
0.96604 0.98908 0.93646 0.78316 0.96373 0.96199 0.91293 0.88945
0.75199 0.78524 0.82668 0.82497 0.77158 0.88554 0.91161
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.93 -29.00 13.06 55.49 0.72 -28.28 16
2 C -0.02 -0.49 5.50 -17.43 -0.10 -0.58 16
3 Si 0.91 22.93 29.55 -169.99 -5.02 17.91 16
4 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16
5 H -0.29 -7.41 7.11 56.52 0.40 -7.01 16
6 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16
7 C -0.24 -6.83 9.99 -15.06 -0.15 -6.98 16
8 H 0.07 1.96 7.83 -52.49 -0.41 1.55 16
9 N -0.73 -19.20 5.60 -59.91 -0.34 -19.53 16
10 C 0.16 3.36 6.10 -4.04 -0.02 3.33 16
11 C -0.11 -1.88 3.63 -89.81 -0.33 -2.21 16
12 H 0.09 1.54 8.14 -51.93 -0.42 1.11 16
13 C -0.14 -2.19 7.43 -25.92 -0.19 -2.38 16
14 C 0.11 1.57 4.32 -67.12 -0.29 1.28 16
15 H 0.10 1.41 7.46 -51.93 -0.39 1.03 16
16 N -0.69 -9.49 5.26 -54.13 -0.28 -9.78 16
17 C 0.59 8.63 7.79 -12.57 -0.10 8.53 16
18 O -0.54 -8.92 16.25 5.25 0.09 -8.83 16
19 C 0.02 0.23 6.64 -84.93 -0.56 -0.33 16
20 C -0.22 -2.07 10.56 29.64 0.31 -1.76 16
21 S 0.23 1.61 22.93 -107.50 -2.46 -0.85 16
22 C 0.11 1.14 7.46 -14.66 -0.11 1.03 16
23 C 0.05 0.47 7.24 -36.69 -0.27 0.20 16
24 C -0.17 -1.22 10.63 -39.34 -0.42 -1.64 16
25 C -0.22 -1.36 10.88 -39.83 -0.43 -1.79 16
26 C -0.01 -0.07 12.08 29.53 0.36 0.29 16
27 O -0.15 -1.60 10.67 4.58 0.05 -1.55 16
28 N -0.42 -5.37 10.08 -8.28 -0.08 -5.46 16
29 C -0.14 -1.80 7.39 -25.91 -0.19 -1.99 16
30 H 0.25 7.59 8.31 -40.82 -0.34 7.25 16
31 H 0.38 10.61 7.67 -40.82 -0.31 10.30 16
32 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16
33 H 0.02 0.42 7.85 -51.93 -0.41 0.01 16
34 H 0.07 1.19 8.14 -51.93 -0.42 0.76 16
35 H 0.09 1.45 7.90 -51.93 -0.41 1.04 16
36 H 0.41 5.48 8.18 -40.82 -0.33 5.15 16
37 H 0.20 1.59 7.99 -52.49 -0.42 1.17 16
38 H 0.16 0.73 8.06 -52.49 -0.42 0.31 16
39 H 0.16 0.58 8.06 -52.49 -0.42 0.15 16
40 H 0.21 0.72 8.06 -52.49 -0.42 0.30 16
41 H 0.10 1.16 8.10 -51.93 -0.42 0.74 16
42 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16
LS Contribution 380.40 15.07 5.73 5.73
Total: -1.00 -35.56 380.40 -9.29 -44.85
By element:
Atomic # 1 Polarization: 16.00 SS G_CDS: -5.20 Total: 10.80 kcal
Atomic # 6 Polarization: -2.51 SS G_CDS: -2.49 Total: -5.00 kcal
Atomic # 7 Polarization: -63.07 SS G_CDS: 0.02 Total: -63.05 kcal
Atomic # 8 Polarization: -10.52 SS G_CDS: 0.13 Total: -10.39 kcal
Atomic # 14 Polarization: 22.93 SS G_CDS: -5.02 Total: 17.91 kcal
Atomic # 16 Polarization: 1.61 SS G_CDS: -2.46 Total: -0.85 kcal
Total LS contribution 5.73 Total: 5.73 kcal
Total: -35.56 -9.29 -44.85 kcal
The number of atoms in the molecule is 42
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001675781883.mol2 42
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 107.490 kcal
(2) G-P(sol) polarization free energy of solvation -35.557 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.933 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.289 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.846 kcal
(6) G-S(sol) free energy of system = (1) + (5) 62.644 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.66 seconds