Wall clock time and date at job start Wed Apr 1 2020 04:47:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86800 * 120.00194 * 2 1 4 4 H 1.48494 * 109.47293 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.46886 * 299.99423 * 3 2 1 6 6 H 1.48496 * 109.47002 * 59.99108 * 3 2 1 7 7 C 1.38816 * 119.99787 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99593 * 180.02562 * 7 2 1 9 9 N 1.36940 * 119.99880 * 0.02562 * 7 2 1 10 10 C 1.46498 * 119.99450 * 179.97438 * 9 7 2 11 11 C 1.53001 * 109.46735 * 180.02562 * 10 9 7 12 12 H 1.08998 * 112.84794 * 316.19088 * 11 10 9 13 13 C 1.53778 * 113.69389 * 87.46692 * 11 10 9 14 14 C 1.53778 * 87.08449 * 139.99094 * 13 11 10 15 15 H 1.08993 * 113.61229 * 220.02023 * 14 13 11 16 16 N 1.46501 * 113.61560 * 89.11214 * 14 13 11 17 17 C 1.34781 * 119.99552 * 107.49938 * 16 14 13 18 18 O 1.21636 * 120.00120 * 0.02562 * 17 16 14 19 19 C 1.47303 * 119.99765 * 179.97438 * 17 16 14 20 20 C 1.35167 * 122.41676 * 180.02562 * 19 17 16 21 21 S 1.71001 * 109.16071 * 179.97438 * 20 19 17 22 22 C 1.75995 * 90.59469 * 359.97438 * 21 20 19 23 23 C 1.47146 * 125.32765 * 179.97438 * 22 21 20 24 24 C 1.36239 * 125.95645 * 359.69609 * 23 22 21 25 25 C 1.40770 * 106.72155 * 179.84924 * 24 23 22 26 26 C 1.34836 * 107.06879 * 0.40948 * 25 24 23 27 27 O 1.34243 * 108.72239 * 359.74515 * 26 25 24 28 28 N 1.30117 * 109.34231 * 359.76242 * 22 21 20 29 29 C 1.53784 * 87.08081 * 334.56700 * 14 13 11 30 30 H 0.96998 * 120.00052 * 0.02562 * 1 2 3 31 31 H 0.96995 * 119.99838 * 0.02562 * 9 7 2 32 32 H 1.08997 * 109.47376 * 60.00112 * 10 9 7 33 33 H 1.09003 * 109.47215 * 300.00139 * 10 9 7 34 34 H 1.08999 * 113.61111 * 254.54157 * 13 11 10 35 35 H 1.08999 * 113.61280 * 25.35540 * 13 11 10 36 36 H 0.96998 * 120.00259 * 287.50678 * 16 14 13 37 37 H 1.07999 * 125.41689 * 359.97438 * 20 19 17 38 38 H 1.07997 * 126.64199 * 359.97438 * 24 23 22 39 39 H 1.07999 * 126.46471 * 180.11834 * 25 24 23 40 40 H 1.08001 * 125.64077 * 179.76591 * 26 25 24 41 41 H 1.09004 * 113.61451 * 270.88641 * 29 14 13 42 42 H 1.08994 * 113.61477 * 139.97943 * 29 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8916 2.3963 -1.2126 6 1 1.8914 2.3965 1.2124 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 2.0580 -3.6568 0.0005 11 6 1.0637 -4.8197 -0.0001 12 1 0.2375 -4.6705 0.6950 13 6 0.6154 -5.2486 -1.4072 14 6 0.7036 -6.7002 -0.9073 15 1 1.1213 -7.3898 -1.6407 16 7 -0.5393 -7.1906 -0.3064 17 6 -1.2969 -8.0900 -0.9649 18 8 -0.9485 -8.4949 -2.0577 19 6 -2.5463 -8.5836 -0.3605 20 6 -3.3426 -9.4853 -0.9769 21 16 -4.6916 -9.8170 0.0203 22 6 -4.0905 -8.6969 1.2374 23 6 -4.7515 -8.3958 2.5171 24 6 -5.9266 -8.9281 2.9552 25 6 -6.1788 -8.3662 4.2210 26 6 -5.1629 -7.5209 4.4883 27 8 -4.3029 -7.5411 3.4577 28 7 -2.9678 -8.1801 0.8305 29 6 1.7303 -6.2001 0.1227 30 1 -0.4850 0.8400 -0.0004 31 1 0.3555 -2.3880 -0.0002 32 1 2.6846 -3.7146 0.8905 33 1 2.6847 -3.7145 -0.8894 34 1 -0.3977 -4.9338 -1.6574 35 1 1.3379 -5.0094 -2.1874 36 1 -0.8170 -6.8679 0.5651 37 1 -3.1564 -9.9260 -1.9451 38 1 -6.5439 -9.6443 2.4334 39 1 -7.0284 -8.5698 4.8559 40 1 -5.0581 -6.9261 5.3836 41 1 2.7582 -6.2224 -0.2392 42 1 1.6172 -6.6535 1.1074 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001675781883.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:47:06 Heat of formation + Delta-G solvation = 37.578292 kcal Electronic energy + Delta-G solvation = -26324.699192 eV Core-core repulsion = 22398.568611 eV Total energy + Delta-G solvation = -3926.130581 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.109 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -43.53895 -41.78219 -40.51387 -39.13637 -36.37549 -34.50719 -34.17757 -32.95754 -32.67627 -30.04612 -28.74507 -26.97617 -26.67873 -25.32937 -24.35825 -22.93179 -22.86136 -21.79387 -20.70932 -20.36174 -19.88788 -19.08162 -18.52521 -17.69736 -17.25722 -17.14789 -16.70690 -16.51476 -16.42216 -15.88177 -15.71480 -15.24218 -15.09129 -15.00360 -14.65053 -14.42193 -13.98322 -13.87005 -13.78567 -13.47255 -13.42072 -13.16083 -13.10649 -12.94496 -12.74730 -12.13641 -11.94981 -11.82561 -11.42292 -11.39104 -11.33018 -11.21035 -11.13727 -10.89476 -10.88902 -10.48078 -10.12981 -9.11648 -8.99684 -7.95969 -5.24928 -0.95658 -0.18752 0.27258 0.31335 1.15725 1.45630 1.47067 1.57303 1.68747 2.00535 2.08606 2.19554 2.55057 2.71499 3.36755 3.51918 3.54694 3.58742 3.88807 3.89380 3.95301 3.98350 4.06176 4.14016 4.30135 4.48971 4.56320 4.71505 4.73158 4.80807 4.83291 4.88188 4.92334 4.94451 5.00428 5.11097 5.22636 5.30523 5.47185 5.48349 5.59377 5.95925 6.17956 6.26470 6.44710 6.97573 7.31888 8.09435 8.32050 9.28067 Molecular weight = 347.11amu Principal moments of inertia in cm(-1) A = 0.010434 B = 0.002327 C = 0.002007 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2682.779442 B =12031.820155 C =13944.955444 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.972 5.972 2 C -0.080 4.080 3 Si 0.976 3.024 4 H -0.265 1.265 5 H -0.293 1.293 6 H -0.292 1.292 7 C -0.244 4.244 8 H 0.077 0.923 9 N -0.747 5.747 10 C 0.161 3.839 11 C -0.113 4.113 12 H 0.076 0.924 13 C -0.140 4.140 14 C 0.123 3.877 15 H 0.105 0.895 16 N -0.688 5.688 17 C 0.592 3.408 18 O -0.564 6.564 19 C -0.011 4.011 20 C -0.222 4.222 21 S 0.331 5.669 22 C 0.083 3.917 23 C 0.006 3.994 24 C -0.153 4.153 25 C -0.216 4.216 26 C -0.017 4.017 27 O -0.183 6.183 28 N -0.458 5.458 29 C -0.115 4.115 30 H 0.251 0.749 31 H 0.371 0.629 32 H 0.023 0.977 33 H 0.025 0.975 34 H 0.047 0.953 35 H 0.094 0.906 36 H 0.413 0.587 37 H 0.210 0.790 38 H 0.182 0.818 39 H 0.187 0.813 40 H 0.239 0.761 41 H 0.115 0.885 42 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.643 -27.620 6.614 31.953 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.623 5.623 2 C -0.272 4.272 3 Si 0.805 3.195 4 H -0.189 1.189 5 H -0.220 1.220 6 H -0.219 1.219 7 C -0.376 4.376 8 H 0.095 0.905 9 N -0.389 5.389 10 C 0.035 3.965 11 C -0.132 4.132 12 H 0.094 0.906 13 C -0.179 4.179 14 C 0.018 3.982 15 H 0.123 0.877 16 N -0.337 5.337 17 C 0.376 3.624 18 O -0.444 6.444 19 C -0.148 4.148 20 C -0.365 4.365 21 S 0.590 5.410 22 C -0.191 4.191 23 C -0.047 4.047 24 C -0.176 4.176 25 C -0.235 4.235 26 C -0.087 4.087 27 O -0.079 6.079 28 N -0.174 5.174 29 C -0.153 4.153 30 H 0.059 0.941 31 H 0.203 0.797 32 H 0.040 0.960 33 H 0.043 0.957 34 H 0.066 0.934 35 H 0.113 0.887 36 H 0.250 0.750 37 H 0.227 0.773 38 H 0.200 0.800 39 H 0.204 0.796 40 H 0.256 0.744 41 H 0.134 0.866 42 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -14.477 -27.930 5.995 32.025 hybrid contribution 0.648 1.934 -0.048 2.040 sum -13.830 -25.996 5.948 30.040 Atomic orbital electron populations 1.69843 1.06726 1.25967 1.59746 1.25627 0.96446 1.01294 1.03831 0.85032 0.78241 0.79574 0.76679 1.18890 1.22044 1.21916 1.19722 0.91561 0.85436 1.40882 0.90524 1.42615 1.05565 1.01391 1.89317 1.20819 0.93615 0.84330 0.97719 1.22667 0.98458 0.94648 0.97418 0.90593 1.23418 1.01326 0.95643 0.97471 1.21904 0.84534 0.94804 0.97002 0.87657 1.45546 1.23012 1.42476 1.22642 1.17388 0.82308 0.78632 0.84034 1.90779 1.72457 1.60151 1.20999 1.19952 0.99747 1.02505 0.92580 1.27035 0.99544 1.02073 1.07857 1.83266 1.17739 1.35610 1.04365 1.24714 0.94869 1.01497 0.97984 1.19151 0.96647 0.99542 0.89316 1.22240 0.95021 1.02868 0.97427 1.22175 1.02581 1.00901 0.97850 1.25207 0.89519 1.02031 0.91927 1.84194 1.46399 1.51792 1.25516 1.67124 1.12630 1.24926 1.12743 1.23240 0.99182 0.93301 0.99623 0.94062 0.79726 0.95958 0.95673 0.93431 0.88737 0.75036 0.77316 0.80039 0.79593 0.74448 0.86642 0.89609 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -61.68 13.06 21.65 0.28 -61.40 16 2 C -0.08 -4.77 5.50 84.86 0.47 -4.30 16 3 Si 0.98 47.46 29.55 68.60 2.03 49.49 16 4 H -0.26 -12.03 7.11 99.48 0.71 -11.32 16 5 H -0.29 -14.22 7.11 99.48 0.71 -13.52 16 6 H -0.29 -14.10 7.11 99.48 0.71 -13.40 16 7 C -0.24 -14.17 9.99 84.03 0.84 -13.33 16 8 H 0.08 4.25 7.83 -2.91 -0.02 4.23 16 9 N -0.75 -39.87 5.60 -343.45 -1.92 -41.79 16 10 C 0.16 6.65 6.10 86.38 0.53 7.18 16 11 C -0.11 -3.78 3.63 -10.27 -0.04 -3.82 16 12 H 0.08 2.74 8.14 -2.39 -0.02 2.72 16 13 C -0.14 -4.54 7.43 31.12 0.23 -4.31 16 14 C 0.12 3.39 4.32 45.52 0.20 3.59 16 15 H 0.11 2.89 7.46 -2.39 -0.02 2.87 16 16 N -0.69 -19.55 5.26 -443.40 -2.33 -21.88 16 17 C 0.59 17.73 7.79 86.63 0.68 18.41 16 18 O -0.56 -19.24 16.25 -4.14 -0.07 -19.31 16 19 C -0.01 -0.29 6.64 40.70 0.27 -0.02 16 20 C -0.22 -4.11 10.56 67.11 0.71 -3.40 16 21 S 0.33 4.04 22.93 -56.49 -1.30 2.74 16 22 C 0.08 1.74 7.46 87.29 0.65 2.39 16 23 C 0.01 0.12 7.24 24.14 0.17 0.30 16 24 C -0.15 -1.92 10.63 22.42 0.24 -1.68 16 25 C -0.22 -2.25 10.88 22.11 0.24 -2.01 16 26 C -0.02 -0.22 12.08 67.04 0.81 0.59 16 27 O -0.18 -4.05 10.67 -6.54 -0.07 -4.12 16 28 N -0.46 -12.04 10.08 -180.10 -1.82 -13.86 16 29 C -0.12 -2.88 7.39 31.12 0.23 -2.65 16 30 H 0.25 15.33 8.31 -92.71 -0.77 14.56 16 31 H 0.37 21.29 7.67 -92.71 -0.71 20.58 16 32 H 0.02 0.91 8.14 -2.39 -0.02 0.90 16 33 H 0.03 1.03 7.85 -2.39 -0.02 1.01 16 34 H 0.05 1.72 8.14 -2.39 -0.02 1.71 16 35 H 0.09 3.00 7.90 -2.39 -0.02 2.98 16 36 H 0.41 11.52 8.18 -92.71 -0.76 10.76 16 37 H 0.21 3.17 7.99 -2.91 -0.02 3.15 16 38 H 0.18 1.10 8.06 -2.91 -0.02 1.07 16 39 H 0.19 0.73 8.06 -2.91 -0.02 0.70 16 40 H 0.24 1.30 8.06 -2.91 -0.02 1.27 16 41 H 0.12 2.50 8.10 -2.39 -0.02 2.48 16 42 H 0.09 1.93 8.14 -2.39 -0.02 1.91 16 Total: -1.00 -79.17 380.40 0.64 -78.53 By element: Atomic # 1 Polarization: 35.05 SS G_CDS: -0.39 Total: 34.66 kcal Atomic # 6 Polarization: -9.29 SS G_CDS: 6.22 Total: -3.06 kcal Atomic # 7 Polarization: -133.14 SS G_CDS: -5.79 Total: -138.93 kcal Atomic # 8 Polarization: -23.29 SS G_CDS: -0.14 Total: -23.42 kcal Atomic # 14 Polarization: 47.46 SS G_CDS: 2.03 Total: 49.49 kcal Atomic # 16 Polarization: 4.04 SS G_CDS: -1.30 Total: 2.74 kcal Total: -79.17 0.64 -78.53 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001675781883.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.106 kcal (2) G-P(sol) polarization free energy of solvation -79.168 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.938 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.640 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.528 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.578 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds