Wall clock time and date at job start Wed Apr 1 2020 04:28:45
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31621 * 1
3 3 Si 1.86800 * 119.99787 * 2 1
4 4 H 1.48503 * 109.46867 * 239.99692 * 3 2 1
5 5 H 1.48499 * 109.47141 * 359.97438 * 3 2 1
6 6 H 1.48498 * 109.47171 * 120.00243 * 3 2 1
7 7 C 1.38812 * 119.99843 * 179.97438 * 2 1 3
8 8 H 1.08001 * 119.99417 * 160.28746 * 7 2 1
9 9 N 1.36934 * 120.00261 * 340.28092 * 7 2 1
10 10 C 1.46499 * 120.00464 * 320.53836 * 9 7 2
11 11 C 1.52994 * 109.46953 * 269.99813 * 10 9 7
12 12 N 1.46501 * 109.46870 * 179.97438 * 11 10 9
13 13 C 1.34774 * 120.00074 * 179.97438 * 12 11 10
14 14 O 1.21728 * 119.99992 * 0.02562 * 13 12 11
15 15 C 1.46418 * 120.00158 * 180.02562 * 13 12 11
16 16 C 1.36819 * 125.99958 * 179.71481 * 15 13 12
17 17 N 1.30365 * 115.30980 * 179.84103 * 16 15 13
18 18 C 1.30925 * 117.31990 * 0.46683 * 17 16 15
19 19 C 1.46856 * 125.28705 * 179.78114 * 18 17 16
20 20 C 1.36427 * 125.97683 * 359.95987 * 19 18 17
21 21 C 1.40614 * 106.71739 * 180.02562 * 20 19 18
22 22 C 1.34950 * 107.09199 * 359.97438 * 21 20 19
23 23 O 1.34163 * 108.74678 * 359.73861 * 22 21 20
24 24 S 1.76121 * 109.42278 * 359.74165 * 18 17 16
25 25 C 1.46508 * 119.99517 * 140.53377 * 9 7 2
26 26 C 1.52997 * 117.49920 * 3.29461 * 25 9 7
27 27 C 1.52994 * 117.50169 * 294.66999 * 25 9 7
28 28 H 0.96998 * 120.00287 * 355.00776 * 1 2 3
29 29 H 1.09000 * 109.46454 * 29.99799 * 10 9 7
30 30 H 1.08998 * 109.47369 * 149.99459 * 10 9 7
31 31 H 1.09000 * 109.47529 * 299.99327 * 11 10 9
32 32 H 1.09004 * 109.47186 * 60.00042 * 11 10 9
33 33 H 0.97002 * 120.00431 * 0.02562 * 12 11 10
34 34 H 1.07995 * 122.34548 * 0.03856 * 16 15 13
35 35 H 1.08002 * 126.64184 * 359.97138 * 20 19 18
36 36 H 1.08002 * 126.45619 * 180.02562 * 21 20 19
37 37 H 1.08003 * 125.62474 * 180.02562 * 22 21 20
38 38 H 1.09003 * 115.54748 * 148.99898 * 25 9 7
39 39 H 1.08992 * 117.49970 * 359.97438 * 26 25 9
40 40 H 1.08998 * 117.49521 * 145.01880 * 26 25 9
41 41 H 1.08998 * 117.50079 * 214.98410 * 27 25 9
42 42 H 1.09004 * 117.49536 * 359.97438 * 27 25 9
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3162 0.0000 0.0000
3 14 2.2501 1.6178 0.0000
4 1 3.1039 1.6964 -1.2125
5 1 1.2851 2.7464 -0.0006
6 1 3.1039 1.6965 1.2125
7 6 2.0102 -1.2022 0.0005
8 1 3.0428 -1.2296 -0.3150
9 7 1.3858 -2.3531 0.4012
10 6 0.4640 -2.3284 1.5395
11 6 1.2392 -2.6033 2.8295
12 7 0.3174 -2.5780 3.9679
13 6 0.7802 -2.7964 5.2147
14 8 1.9642 -3.0144 5.3950
15 6 -0.1411 -2.7717 6.3524
16 6 0.1930 -2.9815 7.6625
17 7 -0.7961 -2.9078 8.5086
18 6 -1.9851 -2.6547 8.0225
19 6 -3.2176 -2.5386 8.8126
20 6 -3.3177 -2.6757 10.1662
21 6 -4.6723 -2.4872 10.4928
22 6 -5.3287 -2.2461 9.3386
23 8 -4.4470 -2.2718 8.3277
24 16 -1.8766 -2.4739 6.2739
25 6 1.6396 -3.6093 -0.3087
26 6 2.6701 -3.5861 -1.4394
27 6 1.1797 -3.7033 -1.7649
28 1 -0.4850 0.8368 0.0731
29 1 -0.0098 -1.3487 1.6020
30 1 -0.3004 -3.0936 1.4048
31 1 1.7129 -3.5830 2.7670
32 1 2.0036 -1.8380 2.9643
33 1 -0.6261 -2.4047 3.8243
34 1 1.2057 -3.1902 7.9743
35 1 -2.5125 -2.8888 10.8538
36 1 -5.1057 -2.5269 11.4813
37 1 -6.3882 -2.0584 9.2448
38 1 1.5778 -4.5129 0.2979
39 1 3.1589 -2.6362 -1.6554
40 1 3.2866 -4.4744 -1.5767
41 1 0.8157 -4.6686 -2.1165
42 1 0.6879 -2.8305 -2.1947
RHF calculation, no. of doubly occupied orbitals= 61
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001731884970.mol2 42
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 04:28:45
Heat of formation + Delta-G solvation = 81.076091 kcal
Electronic energy + Delta-G solvation = -26335.245150 eV
Core-core repulsion = 22411.000775 eV
Total energy + Delta-G solvation = -3924.244375 eV
No. of doubly occupied orbitals = 61
Molecular weight
(most abundant/longest-lived isotopes) = 347.109 amu
Computer time = 0.74 seconds
Orbital eigenvalues (eV)
-42.99814 -40.06481 -38.91901 -37.12397 -34.87326 -33.57823 -33.28234 -32.05449
-30.94631 -29.50452 -27.64252 -25.93611 -24.46270 -22.83228 -22.04367 -21.85852
-21.37431 -21.07500 -19.89681 -19.65808 -18.93196 -17.50155 -16.80224 -16.63179
-16.26554 -15.86472 -15.51701 -15.25101 -15.07509 -14.63318 -14.42565 -14.33246
-13.87103 -13.74698 -13.36940 -13.27032 -12.96991 -12.83098 -12.67878 -11.99300
-11.77986 -11.63565 -11.08553 -10.80280 -10.74926 -10.52622 -10.40102 -10.31695
-10.19988 -10.06521 -9.97937 -9.85682 -9.68656 -9.65804 -9.32287 -8.75813
-8.54895 -8.35993 -6.64481 -5.89250 -3.56031 -0.39224 0.77435 1.25589
1.26870 2.05339 2.12904 2.55857 3.22034 3.26834 3.33464 3.37302
3.40997 3.92767 4.38176 4.45679 4.52607 4.62995 4.83848 4.91098
5.01008 5.23656 5.25667 5.28982 5.40528 5.52750 5.79134 5.87753
5.96162 5.97521 6.01815 6.15165 6.23197 6.41646 6.47983 6.51142
6.55556 6.67993 6.89390 7.02646 7.20641 7.22802 7.39806 7.65816
7.72154 8.27155 8.39888 9.04047 9.64653 10.22569 11.06466
Molecular weight = 347.11amu
Principal moments of inertia in cm(-1)
A = 0.014792 B = 0.002256 C = 0.002184
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1892.432122 B =12407.363949 C =12815.340851
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.883 5.883
2 C 0.016 3.984
3 Si 0.897 3.103
4 H -0.279 1.279
5 H -0.289 1.289
6 H -0.280 1.280
7 C -0.263 4.263
8 H 0.066 0.934
9 N -0.546 5.546
10 C 0.141 3.859
11 C 0.097 3.903
12 N -0.711 5.711
13 C 0.588 3.412
14 O -0.527 6.527
15 C -0.273 4.273
16 C 0.118 3.882
17 N -0.456 5.456
18 C 0.138 3.862
19 C 0.028 3.972
20 C -0.128 4.128
21 C -0.219 4.219
22 C -0.009 4.009
23 O -0.166 6.166
24 S 0.173 5.827
25 C 0.118 3.882
26 C -0.194 4.194
27 C -0.219 4.219
28 H 0.256 0.744
29 H 0.099 0.901
30 H 0.033 0.967
31 H 0.056 0.944
32 H 0.071 0.929
33 H 0.395 0.605
34 H 0.195 0.805
35 H 0.162 0.838
36 H 0.158 0.842
37 H 0.213 0.787
38 H 0.087 0.913
39 H 0.098 0.902
40 H 0.074 0.926
41 H 0.069 0.931
42 H 0.092 0.908
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -11.267 -5.929 17.871 21.942
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.524 5.524
2 C -0.185 4.185
3 Si 0.726 3.274
4 H -0.205 1.205
5 H -0.215 1.215
6 H -0.206 1.206
7 C -0.392 4.392
8 H 0.083 0.917
9 N -0.263 5.263
10 C 0.014 3.986
11 C -0.027 4.027
12 N -0.361 5.361
13 C 0.371 3.629
14 O -0.406 6.406
15 C -0.398 4.398
16 C -0.041 4.041
17 N -0.171 5.171
18 C -0.132 4.132
19 C -0.025 4.025
20 C -0.152 4.152
21 C -0.238 4.238
22 C -0.079 4.079
23 O -0.061 6.061
24 S 0.433 5.567
25 C 0.009 3.991
26 C -0.232 4.232
27 C -0.260 4.260
28 H 0.066 0.934
29 H 0.117 0.883
30 H 0.052 0.948
31 H 0.075 0.925
32 H 0.090 0.910
33 H 0.229 0.771
34 H 0.211 0.789
35 H 0.179 0.821
36 H 0.175 0.825
37 H 0.230 0.770
38 H 0.105 0.895
39 H 0.116 0.884
40 H 0.093 0.907
41 H 0.088 0.912
42 H 0.111 0.889
Dipole moment (debyes) X Y Z Total
from point charges -11.262 -5.708 17.216 21.349
hybrid contribution 0.720 0.813 0.310 1.129
sum -10.542 -4.895 17.526 21.029
Atomic orbital electron populations
1.70040 1.05526 1.26456 1.50405 1.25253 0.95060 0.98927 0.99223
0.86468 0.79308 0.83118 0.78539 1.20499 1.21500 1.20628 1.19010
0.93460 0.84937 1.41837 0.91652 1.43141 1.51008 1.03445 1.28662
1.21010 0.91072 1.03080 0.83486 1.22485 0.93422 1.01537 0.85282
1.46051 1.12580 1.70940 1.06512 1.16638 0.86668 0.77887 0.81673
1.90852 1.15430 1.49592 1.84723 1.26242 0.97011 1.16593 0.99931
1.22260 0.99249 0.96541 0.86046 1.66343 0.97240 1.16525 1.36958
1.24179 0.92530 1.03748 0.92725 1.18568 0.82167 1.10599 0.91194
1.21976 0.97837 1.01948 0.93453 1.21881 0.93691 1.08210 1.00008
1.24376 0.95293 1.03348 0.84861 1.84068 1.15714 1.69417 1.36918
1.85126 1.02396 1.63002 1.06211 1.21254 1.00973 0.90288 0.86557
1.23025 0.92190 1.01941 1.06049 1.23338 0.96898 1.01010 1.04716
0.93398 0.88295 0.94811 0.92532 0.91020 0.77107 0.78867 0.82081
0.82451 0.77048 0.89512 0.88388 0.90711 0.91216 0.88918
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.88 -23.96 11.50 55.49 0.64 -23.32 16
2 C 0.02 0.43 4.98 -17.43 -0.09 0.35 16
3 Si 0.90 20.97 29.60 -169.99 -5.03 15.94 16
4 H -0.28 -6.50 7.11 56.52 0.40 -6.09 16
5 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16
6 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16
7 C -0.26 -6.82 8.47 -15.06 -0.13 -6.94 16
8 H 0.07 1.71 6.75 -52.49 -0.35 1.36 16
9 N -0.55 -12.87 2.75 -165.67 -0.46 -13.33 16
10 C 0.14 3.02 5.45 -4.05 -0.02 3.00 16
11 C 0.10 1.90 6.00 -4.04 -0.02 1.88 16
12 N -0.71 -11.84 5.55 -61.70 -0.34 -12.18 16
13 C 0.59 9.92 7.78 -12.97 -0.10 9.82 16
14 O -0.53 -10.53 16.86 5.16 0.09 -10.44 16
15 C -0.27 -3.80 6.50 -36.80 -0.24 -4.04 16
16 C 0.12 1.53 11.05 -18.69 -0.21 1.32 16
17 N -0.46 -5.77 10.47 -11.00 -0.12 -5.89 16
18 C 0.14 1.65 7.44 -14.45 -0.11 1.54 16
19 C 0.03 0.29 7.21 -36.75 -0.26 0.03 16
20 C -0.13 -1.13 10.79 -39.34 -0.42 -1.55 16
21 C -0.22 -1.42 10.88 -39.85 -0.43 -1.85 16
22 C -0.01 -0.05 12.08 29.56 0.36 0.30 16
23 O -0.17 -1.58 10.67 4.63 0.05 -1.53 16
24 S 0.17 2.03 22.52 -107.50 -2.42 -0.39 16
25 C 0.12 2.46 6.56 -67.93 -0.45 2.01 16
26 C -0.19 -3.78 9.80 -26.73 -0.26 -4.04 16
27 C -0.22 -4.38 10.36 -26.73 -0.28 -4.66 16
28 H 0.26 6.75 8.32 -40.82 -0.34 6.41 16
29 H 0.10 2.38 5.59 -51.93 -0.29 2.09 16
30 H 0.03 0.68 8.07 -51.93 -0.42 0.26 16
31 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16
32 H 0.07 1.58 8.14 -51.93 -0.42 1.16 16
33 H 0.40 5.77 7.64 -40.82 -0.31 5.46 16
34 H 0.19 2.24 8.05 -52.49 -0.42 1.82 16
35 H 0.16 1.28 8.06 -52.49 -0.42 0.86 16
36 H 0.16 0.61 8.06 -52.49 -0.42 0.18 16
37 H 0.21 0.41 8.06 -52.48 -0.42 -0.01 16
38 H 0.09 1.64 8.14 -51.93 -0.42 1.21 16
39 H 0.10 2.08 6.46 -51.93 -0.34 1.75 16
40 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16
41 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16
42 H 0.09 2.12 8.14 -51.93 -0.42 1.70 16
LS Contribution 380.49 15.07 5.73 5.73
Total: -1.00 -30.74 380.49 -9.60 -40.34
By element:
Atomic # 1 Polarization: 12.96 SS G_CDS: -5.07 Total: 7.89 kcal
Atomic # 6 Polarization: -0.16 SS G_CDS: -2.67 Total: -2.83 kcal
Atomic # 7 Polarization: -54.44 SS G_CDS: -0.27 Total: -54.71 kcal
Atomic # 8 Polarization: -12.10 SS G_CDS: 0.14 Total: -11.97 kcal
Atomic # 14 Polarization: 20.97 SS G_CDS: -5.03 Total: 15.94 kcal
Atomic # 16 Polarization: 2.03 SS G_CDS: -2.42 Total: -0.39 kcal
Total LS contribution 5.73 Total: 5.73 kcal
Total: -30.74 -9.60 -40.34 kcal
The number of atoms in the molecule is 42
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001731884970.mol2 42
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 121.417 kcal
(2) G-P(sol) polarization free energy of solvation -30.744 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.673 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.597 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.341 kcal
(6) G-S(sol) free energy of system = (1) + (5) 81.076 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.75 seconds