Wall clock time and date at job start Wed Apr 1 2020 04:28:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86800 * 119.99787 * 2 1 4 4 H 1.48503 * 109.46867 * 239.99692 * 3 2 1 5 5 H 1.48499 * 109.47141 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47171 * 120.00243 * 3 2 1 7 7 C 1.38812 * 119.99843 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99417 * 160.28746 * 7 2 1 9 9 N 1.36934 * 120.00261 * 340.28092 * 7 2 1 10 10 C 1.46499 * 120.00464 * 320.53836 * 9 7 2 11 11 C 1.52994 * 109.46953 * 269.99813 * 10 9 7 12 12 N 1.46501 * 109.46870 * 179.97438 * 11 10 9 13 13 C 1.34774 * 120.00074 * 179.97438 * 12 11 10 14 14 O 1.21728 * 119.99992 * 0.02562 * 13 12 11 15 15 C 1.46418 * 120.00158 * 180.02562 * 13 12 11 16 16 C 1.36819 * 125.99958 * 179.71481 * 15 13 12 17 17 N 1.30365 * 115.30980 * 179.84103 * 16 15 13 18 18 C 1.30925 * 117.31990 * 0.46683 * 17 16 15 19 19 C 1.46856 * 125.28705 * 179.78114 * 18 17 16 20 20 C 1.36427 * 125.97683 * 359.95987 * 19 18 17 21 21 C 1.40614 * 106.71739 * 180.02562 * 20 19 18 22 22 C 1.34950 * 107.09199 * 359.97438 * 21 20 19 23 23 O 1.34163 * 108.74678 * 359.73861 * 22 21 20 24 24 S 1.76121 * 109.42278 * 359.74165 * 18 17 16 25 25 C 1.46508 * 119.99517 * 140.53377 * 9 7 2 26 26 C 1.52997 * 117.49920 * 3.29461 * 25 9 7 27 27 C 1.52994 * 117.50169 * 294.66999 * 25 9 7 28 28 H 0.96998 * 120.00287 * 355.00776 * 1 2 3 29 29 H 1.09000 * 109.46454 * 29.99799 * 10 9 7 30 30 H 1.08998 * 109.47369 * 149.99459 * 10 9 7 31 31 H 1.09000 * 109.47529 * 299.99327 * 11 10 9 32 32 H 1.09004 * 109.47186 * 60.00042 * 11 10 9 33 33 H 0.97002 * 120.00431 * 0.02562 * 12 11 10 34 34 H 1.07995 * 122.34548 * 0.03856 * 16 15 13 35 35 H 1.08002 * 126.64184 * 359.97138 * 20 19 18 36 36 H 1.08002 * 126.45619 * 180.02562 * 21 20 19 37 37 H 1.08003 * 125.62474 * 180.02562 * 22 21 20 38 38 H 1.09003 * 115.54748 * 148.99898 * 25 9 7 39 39 H 1.08992 * 117.49970 * 359.97438 * 26 25 9 40 40 H 1.08998 * 117.49521 * 145.01880 * 26 25 9 41 41 H 1.08998 * 117.50079 * 214.98410 * 27 25 9 42 42 H 1.09004 * 117.49536 * 359.97438 * 27 25 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2851 2.7464 -0.0006 6 1 3.1039 1.6965 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0428 -1.2296 -0.3150 9 7 1.3858 -2.3531 0.4012 10 6 0.4640 -2.3284 1.5395 11 6 1.2392 -2.6033 2.8295 12 7 0.3174 -2.5780 3.9679 13 6 0.7802 -2.7964 5.2147 14 8 1.9642 -3.0144 5.3950 15 6 -0.1411 -2.7717 6.3524 16 6 0.1930 -2.9815 7.6625 17 7 -0.7961 -2.9078 8.5086 18 6 -1.9851 -2.6547 8.0225 19 6 -3.2176 -2.5386 8.8126 20 6 -3.3177 -2.6757 10.1662 21 6 -4.6723 -2.4872 10.4928 22 6 -5.3287 -2.2461 9.3386 23 8 -4.4470 -2.2718 8.3277 24 16 -1.8766 -2.4739 6.2739 25 6 1.6396 -3.6093 -0.3087 26 6 2.6701 -3.5861 -1.4394 27 6 1.1797 -3.7033 -1.7649 28 1 -0.4850 0.8368 0.0731 29 1 -0.0098 -1.3487 1.6020 30 1 -0.3004 -3.0936 1.4048 31 1 1.7129 -3.5830 2.7670 32 1 2.0036 -1.8380 2.9643 33 1 -0.6261 -2.4047 3.8243 34 1 1.2057 -3.1902 7.9743 35 1 -2.5125 -2.8888 10.8538 36 1 -5.1057 -2.5269 11.4813 37 1 -6.3882 -2.0584 9.2448 38 1 1.5778 -4.5129 0.2979 39 1 3.1589 -2.6362 -1.6554 40 1 3.2866 -4.4744 -1.5767 41 1 0.8157 -4.6686 -2.1165 42 1 0.6879 -2.8305 -2.1947 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001731884970.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:28:45 Heat of formation + Delta-G solvation = 81.076091 kcal Electronic energy + Delta-G solvation = -26335.245150 eV Core-core repulsion = 22411.000775 eV Total energy + Delta-G solvation = -3924.244375 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.109 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.99814 -40.06481 -38.91901 -37.12397 -34.87326 -33.57823 -33.28234 -32.05449 -30.94631 -29.50452 -27.64252 -25.93611 -24.46270 -22.83228 -22.04367 -21.85852 -21.37431 -21.07500 -19.89681 -19.65808 -18.93196 -17.50155 -16.80224 -16.63179 -16.26554 -15.86472 -15.51701 -15.25101 -15.07509 -14.63318 -14.42565 -14.33246 -13.87103 -13.74698 -13.36940 -13.27032 -12.96991 -12.83098 -12.67878 -11.99300 -11.77986 -11.63565 -11.08553 -10.80280 -10.74926 -10.52622 -10.40102 -10.31695 -10.19988 -10.06521 -9.97937 -9.85682 -9.68656 -9.65804 -9.32287 -8.75813 -8.54895 -8.35993 -6.64481 -5.89250 -3.56031 -0.39224 0.77435 1.25589 1.26870 2.05339 2.12904 2.55857 3.22034 3.26834 3.33464 3.37302 3.40997 3.92767 4.38176 4.45679 4.52607 4.62995 4.83848 4.91098 5.01008 5.23656 5.25667 5.28982 5.40528 5.52750 5.79134 5.87753 5.96162 5.97521 6.01815 6.15165 6.23197 6.41646 6.47983 6.51142 6.55556 6.67993 6.89390 7.02646 7.20641 7.22802 7.39806 7.65816 7.72154 8.27155 8.39888 9.04047 9.64653 10.22569 11.06466 Molecular weight = 347.11amu Principal moments of inertia in cm(-1) A = 0.014792 B = 0.002256 C = 0.002184 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1892.432122 B =12407.363949 C =12815.340851 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.883 5.883 2 C 0.016 3.984 3 Si 0.897 3.103 4 H -0.279 1.279 5 H -0.289 1.289 6 H -0.280 1.280 7 C -0.263 4.263 8 H 0.066 0.934 9 N -0.546 5.546 10 C 0.141 3.859 11 C 0.097 3.903 12 N -0.711 5.711 13 C 0.588 3.412 14 O -0.527 6.527 15 C -0.273 4.273 16 C 0.118 3.882 17 N -0.456 5.456 18 C 0.138 3.862 19 C 0.028 3.972 20 C -0.128 4.128 21 C -0.219 4.219 22 C -0.009 4.009 23 O -0.166 6.166 24 S 0.173 5.827 25 C 0.118 3.882 26 C -0.194 4.194 27 C -0.219 4.219 28 H 0.256 0.744 29 H 0.099 0.901 30 H 0.033 0.967 31 H 0.056 0.944 32 H 0.071 0.929 33 H 0.395 0.605 34 H 0.195 0.805 35 H 0.162 0.838 36 H 0.158 0.842 37 H 0.213 0.787 38 H 0.087 0.913 39 H 0.098 0.902 40 H 0.074 0.926 41 H 0.069 0.931 42 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.267 -5.929 17.871 21.942 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.524 5.524 2 C -0.185 4.185 3 Si 0.726 3.274 4 H -0.205 1.205 5 H -0.215 1.215 6 H -0.206 1.206 7 C -0.392 4.392 8 H 0.083 0.917 9 N -0.263 5.263 10 C 0.014 3.986 11 C -0.027 4.027 12 N -0.361 5.361 13 C 0.371 3.629 14 O -0.406 6.406 15 C -0.398 4.398 16 C -0.041 4.041 17 N -0.171 5.171 18 C -0.132 4.132 19 C -0.025 4.025 20 C -0.152 4.152 21 C -0.238 4.238 22 C -0.079 4.079 23 O -0.061 6.061 24 S 0.433 5.567 25 C 0.009 3.991 26 C -0.232 4.232 27 C -0.260 4.260 28 H 0.066 0.934 29 H 0.117 0.883 30 H 0.052 0.948 31 H 0.075 0.925 32 H 0.090 0.910 33 H 0.229 0.771 34 H 0.211 0.789 35 H 0.179 0.821 36 H 0.175 0.825 37 H 0.230 0.770 38 H 0.105 0.895 39 H 0.116 0.884 40 H 0.093 0.907 41 H 0.088 0.912 42 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -11.262 -5.708 17.216 21.349 hybrid contribution 0.720 0.813 0.310 1.129 sum -10.542 -4.895 17.526 21.029 Atomic orbital electron populations 1.70040 1.05526 1.26456 1.50405 1.25253 0.95060 0.98927 0.99223 0.86468 0.79308 0.83118 0.78539 1.20499 1.21500 1.20628 1.19010 0.93460 0.84937 1.41837 0.91652 1.43141 1.51008 1.03445 1.28662 1.21010 0.91072 1.03080 0.83486 1.22485 0.93422 1.01537 0.85282 1.46051 1.12580 1.70940 1.06512 1.16638 0.86668 0.77887 0.81673 1.90852 1.15430 1.49592 1.84723 1.26242 0.97011 1.16593 0.99931 1.22260 0.99249 0.96541 0.86046 1.66343 0.97240 1.16525 1.36958 1.24179 0.92530 1.03748 0.92725 1.18568 0.82167 1.10599 0.91194 1.21976 0.97837 1.01948 0.93453 1.21881 0.93691 1.08210 1.00008 1.24376 0.95293 1.03348 0.84861 1.84068 1.15714 1.69417 1.36918 1.85126 1.02396 1.63002 1.06211 1.21254 1.00973 0.90288 0.86557 1.23025 0.92190 1.01941 1.06049 1.23338 0.96898 1.01010 1.04716 0.93398 0.88295 0.94811 0.92532 0.91020 0.77107 0.78867 0.82081 0.82451 0.77048 0.89512 0.88388 0.90711 0.91216 0.88918 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -23.96 11.50 55.49 0.64 -23.32 16 2 C 0.02 0.43 4.98 -17.43 -0.09 0.35 16 3 Si 0.90 20.97 29.60 -169.99 -5.03 15.94 16 4 H -0.28 -6.50 7.11 56.52 0.40 -6.09 16 5 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 6 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 7 C -0.26 -6.82 8.47 -15.06 -0.13 -6.94 16 8 H 0.07 1.71 6.75 -52.49 -0.35 1.36 16 9 N -0.55 -12.87 2.75 -165.67 -0.46 -13.33 16 10 C 0.14 3.02 5.45 -4.05 -0.02 3.00 16 11 C 0.10 1.90 6.00 -4.04 -0.02 1.88 16 12 N -0.71 -11.84 5.55 -61.70 -0.34 -12.18 16 13 C 0.59 9.92 7.78 -12.97 -0.10 9.82 16 14 O -0.53 -10.53 16.86 5.16 0.09 -10.44 16 15 C -0.27 -3.80 6.50 -36.80 -0.24 -4.04 16 16 C 0.12 1.53 11.05 -18.69 -0.21 1.32 16 17 N -0.46 -5.77 10.47 -11.00 -0.12 -5.89 16 18 C 0.14 1.65 7.44 -14.45 -0.11 1.54 16 19 C 0.03 0.29 7.21 -36.75 -0.26 0.03 16 20 C -0.13 -1.13 10.79 -39.34 -0.42 -1.55 16 21 C -0.22 -1.42 10.88 -39.85 -0.43 -1.85 16 22 C -0.01 -0.05 12.08 29.56 0.36 0.30 16 23 O -0.17 -1.58 10.67 4.63 0.05 -1.53 16 24 S 0.17 2.03 22.52 -107.50 -2.42 -0.39 16 25 C 0.12 2.46 6.56 -67.93 -0.45 2.01 16 26 C -0.19 -3.78 9.80 -26.73 -0.26 -4.04 16 27 C -0.22 -4.38 10.36 -26.73 -0.28 -4.66 16 28 H 0.26 6.75 8.32 -40.82 -0.34 6.41 16 29 H 0.10 2.38 5.59 -51.93 -0.29 2.09 16 30 H 0.03 0.68 8.07 -51.93 -0.42 0.26 16 31 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 32 H 0.07 1.58 8.14 -51.93 -0.42 1.16 16 33 H 0.40 5.77 7.64 -40.82 -0.31 5.46 16 34 H 0.19 2.24 8.05 -52.49 -0.42 1.82 16 35 H 0.16 1.28 8.06 -52.49 -0.42 0.86 16 36 H 0.16 0.61 8.06 -52.49 -0.42 0.18 16 37 H 0.21 0.41 8.06 -52.48 -0.42 -0.01 16 38 H 0.09 1.64 8.14 -51.93 -0.42 1.21 16 39 H 0.10 2.08 6.46 -51.93 -0.34 1.75 16 40 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 41 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 42 H 0.09 2.12 8.14 -51.93 -0.42 1.70 16 LS Contribution 380.49 15.07 5.73 5.73 Total: -1.00 -30.74 380.49 -9.60 -40.34 By element: Atomic # 1 Polarization: 12.96 SS G_CDS: -5.07 Total: 7.89 kcal Atomic # 6 Polarization: -0.16 SS G_CDS: -2.67 Total: -2.83 kcal Atomic # 7 Polarization: -54.44 SS G_CDS: -0.27 Total: -54.71 kcal Atomic # 8 Polarization: -12.10 SS G_CDS: 0.14 Total: -11.97 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.03 Total: 15.94 kcal Atomic # 16 Polarization: 2.03 SS G_CDS: -2.42 Total: -0.39 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -30.74 -9.60 -40.34 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001731884970.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.417 kcal (2) G-P(sol) polarization free energy of solvation -30.744 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.673 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.597 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.341 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.076 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds