Wall clock time and date at job start Wed Apr 1 2020 04:28:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86800 * 119.99787 * 2 1 4 4 H 1.48503 * 109.46867 * 239.99692 * 3 2 1 5 5 H 1.48499 * 109.47141 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47171 * 120.00243 * 3 2 1 7 7 C 1.38812 * 119.99843 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99417 * 160.28746 * 7 2 1 9 9 N 1.36934 * 120.00261 * 340.28092 * 7 2 1 10 10 C 1.46499 * 120.00464 * 320.53836 * 9 7 2 11 11 C 1.52994 * 109.46953 * 269.99813 * 10 9 7 12 12 N 1.46501 * 109.46870 * 179.97438 * 11 10 9 13 13 C 1.34774 * 120.00074 * 179.97438 * 12 11 10 14 14 O 1.21728 * 119.99992 * 0.02562 * 13 12 11 15 15 C 1.46418 * 120.00158 * 180.02562 * 13 12 11 16 16 C 1.36819 * 125.99958 * 179.71481 * 15 13 12 17 17 N 1.30365 * 115.30980 * 179.84103 * 16 15 13 18 18 C 1.30925 * 117.31990 * 0.46683 * 17 16 15 19 19 C 1.46856 * 125.28705 * 179.78114 * 18 17 16 20 20 C 1.36427 * 125.97683 * 359.95987 * 19 18 17 21 21 C 1.40614 * 106.71739 * 180.02562 * 20 19 18 22 22 C 1.34950 * 107.09199 * 359.97438 * 21 20 19 23 23 O 1.34163 * 108.74678 * 359.73861 * 22 21 20 24 24 S 1.76121 * 109.42278 * 359.74165 * 18 17 16 25 25 C 1.46508 * 119.99517 * 140.53377 * 9 7 2 26 26 C 1.52997 * 117.49920 * 3.29461 * 25 9 7 27 27 C 1.52994 * 117.50169 * 294.66999 * 25 9 7 28 28 H 0.96998 * 120.00287 * 355.00776 * 1 2 3 29 29 H 1.09000 * 109.46454 * 29.99799 * 10 9 7 30 30 H 1.08998 * 109.47369 * 149.99459 * 10 9 7 31 31 H 1.09000 * 109.47529 * 299.99327 * 11 10 9 32 32 H 1.09004 * 109.47186 * 60.00042 * 11 10 9 33 33 H 0.97002 * 120.00431 * 0.02562 * 12 11 10 34 34 H 1.07995 * 122.34548 * 0.03856 * 16 15 13 35 35 H 1.08002 * 126.64184 * 359.97138 * 20 19 18 36 36 H 1.08002 * 126.45619 * 180.02562 * 21 20 19 37 37 H 1.08003 * 125.62474 * 180.02562 * 22 21 20 38 38 H 1.09003 * 115.54748 * 148.99898 * 25 9 7 39 39 H 1.08992 * 117.49970 * 359.97438 * 26 25 9 40 40 H 1.08998 * 117.49521 * 145.01880 * 26 25 9 41 41 H 1.08998 * 117.50079 * 214.98410 * 27 25 9 42 42 H 1.09004 * 117.49536 * 359.97438 * 27 25 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2851 2.7464 -0.0006 6 1 3.1039 1.6965 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0428 -1.2296 -0.3150 9 7 1.3858 -2.3531 0.4012 10 6 0.4640 -2.3284 1.5395 11 6 1.2392 -2.6033 2.8295 12 7 0.3174 -2.5780 3.9679 13 6 0.7802 -2.7964 5.2147 14 8 1.9642 -3.0144 5.3950 15 6 -0.1411 -2.7717 6.3524 16 6 0.1930 -2.9815 7.6625 17 7 -0.7961 -2.9078 8.5086 18 6 -1.9851 -2.6547 8.0225 19 6 -3.2176 -2.5386 8.8126 20 6 -3.3177 -2.6757 10.1662 21 6 -4.6723 -2.4872 10.4928 22 6 -5.3287 -2.2461 9.3386 23 8 -4.4470 -2.2718 8.3277 24 16 -1.8766 -2.4739 6.2739 25 6 1.6396 -3.6093 -0.3087 26 6 2.6701 -3.5861 -1.4394 27 6 1.1797 -3.7033 -1.7649 28 1 -0.4850 0.8368 0.0731 29 1 -0.0098 -1.3487 1.6020 30 1 -0.3004 -3.0936 1.4048 31 1 1.7129 -3.5830 2.7670 32 1 2.0036 -1.8380 2.9643 33 1 -0.6261 -2.4047 3.8243 34 1 1.2057 -3.1902 7.9743 35 1 -2.5125 -2.8888 10.8538 36 1 -5.1057 -2.5269 11.4813 37 1 -6.3882 -2.0584 9.2448 38 1 1.5778 -4.5129 0.2979 39 1 3.1589 -2.6362 -1.6554 40 1 3.2866 -4.4744 -1.5767 41 1 0.8157 -4.6686 -2.1165 42 1 0.6879 -2.8305 -2.1947 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001731884970.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:28:44 Heat of formation + Delta-G solvation = 62.143103 kcal Electronic energy + Delta-G solvation = -26336.066146 eV Core-core repulsion = 22411.000775 eV Total energy + Delta-G solvation = -3925.065371 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.109 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -43.62086 -41.21598 -40.13887 -38.82091 -36.40907 -35.03586 -34.22167 -33.08301 -32.57334 -30.58703 -29.13485 -26.96247 -26.19696 -24.02447 -23.21470 -22.88767 -22.53902 -22.39646 -21.59747 -20.59784 -20.05286 -18.34519 -18.25359 -17.68477 -17.33256 -17.28398 -17.04542 -16.60738 -16.46090 -15.93391 -15.77766 -15.45936 -15.31015 -15.01186 -14.48460 -14.40871 -14.00076 -13.90223 -13.79642 -13.52920 -13.31357 -12.94670 -12.78548 -12.65446 -12.51289 -12.17415 -11.96063 -11.72778 -11.51798 -11.36476 -11.28347 -11.07406 -10.91410 -10.87939 -10.55698 -10.52727 -10.21281 -9.14620 -8.55293 -7.85077 -5.55983 -1.33689 -0.17203 0.28104 0.49943 1.33480 1.42679 1.45925 1.46236 1.51702 1.71015 1.93768 2.01929 2.46943 3.13066 3.19534 3.38948 3.50642 3.61903 3.71264 3.96747 3.99470 4.14569 4.29119 4.32329 4.36121 4.51199 4.58481 4.60269 4.74336 4.87332 4.94216 4.95117 4.97486 5.02250 5.12880 5.23336 5.38882 5.44123 5.55835 5.60786 5.70268 5.89670 6.23325 6.34815 6.43888 6.93607 7.11023 7.76624 8.29101 9.05625 Molecular weight = 347.11amu Principal moments of inertia in cm(-1) A = 0.014792 B = 0.002256 C = 0.002184 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1892.432122 B =12407.363949 C =12815.340851 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.907 5.907 2 C -0.026 4.026 3 Si 0.948 3.052 4 H -0.276 1.276 5 H -0.289 1.289 6 H -0.283 1.283 7 C -0.266 4.266 8 H 0.057 0.943 9 N -0.563 5.563 10 C 0.148 3.852 11 C 0.119 3.881 12 N -0.707 5.707 13 C 0.593 3.407 14 O -0.565 6.565 15 C -0.307 4.307 16 C 0.132 3.868 17 N -0.473 5.473 18 C 0.152 3.848 19 C -0.017 4.017 20 C -0.117 4.117 21 C -0.226 4.226 22 C 0.012 3.988 23 O -0.181 6.181 24 S 0.194 5.806 25 C 0.098 3.902 26 C -0.183 4.183 27 C -0.212 4.212 28 H 0.253 0.747 29 H 0.074 0.926 30 H 0.047 0.953 31 H 0.057 0.943 32 H 0.041 0.959 33 H 0.406 0.594 34 H 0.202 0.798 35 H 0.166 0.834 36 H 0.187 0.813 37 H 0.256 0.744 38 H 0.112 0.888 39 H 0.074 0.926 40 H 0.110 0.890 41 H 0.102 0.898 42 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.098 -6.781 19.450 24.410 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.225 4.225 3 Si 0.776 3.224 4 H -0.202 1.202 5 H -0.215 1.215 6 H -0.209 1.209 7 C -0.396 4.396 8 H 0.075 0.925 9 N -0.281 5.281 10 C 0.021 3.979 11 C -0.006 4.006 12 N -0.357 5.357 13 C 0.379 3.621 14 O -0.446 6.446 15 C -0.431 4.431 16 C -0.028 4.028 17 N -0.188 5.188 18 C -0.117 4.117 19 C -0.069 4.069 20 C -0.142 4.142 21 C -0.245 4.245 22 C -0.058 4.058 23 O -0.077 6.077 24 S 0.455 5.545 25 C -0.010 4.010 26 C -0.221 4.221 27 C -0.252 4.252 28 H 0.063 0.937 29 H 0.092 0.908 30 H 0.066 0.934 31 H 0.076 0.924 32 H 0.060 0.940 33 H 0.241 0.759 34 H 0.218 0.782 35 H 0.183 0.817 36 H 0.204 0.796 37 H 0.272 0.728 38 H 0.130 0.870 39 H 0.093 0.907 40 H 0.128 0.872 41 H 0.121 0.879 42 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -13.104 -6.570 18.775 23.819 hybrid contribution 1.078 1.033 -0.004 1.494 sum -12.026 -5.536 18.770 22.969 Atomic orbital electron populations 1.70131 1.06366 1.26656 1.51821 1.25808 0.95709 1.01188 0.99778 0.85656 0.78178 0.80279 0.78245 1.20166 1.21529 1.20926 1.19119 0.93271 0.86166 1.41042 0.92527 1.43333 1.51160 1.03850 1.29736 1.20866 0.91128 1.02088 0.83801 1.21984 0.92780 1.00384 0.85488 1.45869 1.12713 1.71139 1.06024 1.16885 0.86585 0.76605 0.82047 1.90818 1.17156 1.51352 1.85321 1.25794 0.98004 1.20253 0.99092 1.22437 0.99774 0.94775 0.85778 1.66423 0.97451 1.18218 1.36747 1.24579 0.93029 1.01139 0.92943 1.18571 0.82332 1.14299 0.91732 1.22303 0.99326 0.99737 0.92852 1.22263 0.92482 1.08143 1.01613 1.25384 0.96482 0.99940 0.84022 1.84074 1.15673 1.69757 1.38218 1.84956 1.00430 1.62960 1.06163 1.21565 1.02247 0.89981 0.87179 1.23033 0.92134 1.02320 1.04621 1.23241 0.97175 1.01130 1.03691 0.93744 0.90793 0.93420 0.92419 0.94047 0.75880 0.78154 0.81681 0.79558 0.72822 0.87018 0.90727 0.87190 0.87930 0.92481 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -50.37 11.50 21.65 0.25 -50.12 16 2 C -0.03 -1.41 4.98 84.86 0.42 -0.99 16 3 Si 0.95 44.00 29.60 68.60 2.03 46.03 16 4 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 5 H -0.29 -13.33 7.11 99.48 0.71 -12.63 16 6 H -0.28 -13.14 7.11 99.48 0.71 -12.43 16 7 C -0.27 -14.07 8.47 84.03 0.71 -13.36 16 8 H 0.06 3.05 6.75 -2.91 -0.02 3.03 16 9 N -0.56 -26.87 2.75 -678.05 -1.86 -28.73 16 10 C 0.15 6.46 5.45 86.38 0.47 6.93 16 11 C 0.12 4.78 6.00 86.38 0.52 5.30 16 12 N -0.71 -24.07 5.55 -467.32 -2.59 -26.67 16 13 C 0.59 20.54 7.78 86.37 0.67 21.21 16 14 O -0.57 -23.29 16.86 -4.44 -0.07 -23.37 16 15 C -0.31 -8.67 6.50 24.07 0.16 -8.52 16 16 C 0.13 3.46 11.05 84.58 0.93 4.39 16 17 N -0.47 -11.83 10.47 -188.73 -1.98 -13.81 16 18 C 0.15 3.55 7.44 87.09 0.65 4.20 16 19 C -0.02 -0.33 7.21 24.10 0.17 -0.16 16 20 C -0.12 -1.83 10.79 22.43 0.24 -1.59 16 21 C -0.23 -2.14 10.88 22.09 0.24 -1.90 16 22 C 0.01 0.10 12.08 67.06 0.81 0.91 16 23 O -0.18 -3.05 10.67 -6.37 -0.07 -3.12 16 24 S 0.19 4.50 22.52 -56.49 -1.27 3.23 16 25 C 0.10 3.99 6.56 44.99 0.30 4.29 16 26 C -0.18 -6.89 9.80 30.59 0.30 -6.59 16 27 C -0.21 -8.24 10.36 30.59 0.32 -7.92 16 28 H 0.25 13.66 8.32 -92.71 -0.77 12.89 16 29 H 0.07 3.66 5.59 -2.39 -0.01 3.65 16 30 H 0.05 1.91 8.07 -2.39 -0.02 1.89 16 31 H 0.06 2.29 8.14 -2.39 -0.02 2.27 16 32 H 0.04 1.90 8.14 -2.38 -0.02 1.88 16 33 H 0.41 12.04 7.64 -92.71 -0.71 11.33 16 34 H 0.20 4.74 8.05 -2.91 -0.02 4.72 16 35 H 0.17 2.35 8.06 -2.91 -0.02 2.33 16 36 H 0.19 0.61 8.06 -2.91 -0.02 0.59 16 37 H 0.26 -0.31 8.06 -2.91 -0.02 -0.33 16 38 H 0.11 3.97 8.14 -2.39 -0.02 3.95 16 39 H 0.07 3.17 6.46 -2.39 -0.02 3.16 16 40 H 0.11 3.36 8.14 -2.39 -0.02 3.34 16 41 H 0.10 3.29 8.14 -2.39 -0.02 3.27 16 42 H 0.06 2.63 8.14 -2.38 -0.02 2.62 16 Total: -1.00 -68.37 380.49 1.71 -66.66 By element: Atomic # 1 Polarization: 23.32 SS G_CDS: 0.36 Total: 23.68 kcal Atomic # 6 Polarization: -0.70 SS G_CDS: 6.91 Total: 6.21 kcal Atomic # 7 Polarization: -113.14 SS G_CDS: -6.18 Total: -119.33 kcal Atomic # 8 Polarization: -26.34 SS G_CDS: -0.14 Total: -26.48 kcal Atomic # 14 Polarization: 44.00 SS G_CDS: 2.03 Total: 46.03 kcal Atomic # 16 Polarization: 4.50 SS G_CDS: -1.27 Total: 3.23 kcal Total: -68.37 1.71 -66.66 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001731884970.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.802 kcal (2) G-P(sol) polarization free energy of solvation -68.366 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.436 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.707 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.659 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.143 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds