Wall clock time and date at job start Wed Apr 1 2020 04:02:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.29946 * 126.29051 * 2 1 4 4 O 1.21297 * 110.25256 * 179.97438 * 3 2 1 5 5 C 1.33643 * 109.81332 * 359.97438 * 4 3 2 6 6 C 1.50700 * 126.55372 * 180.02562 * 5 4 3 7 7 C 1.53007 * 109.47233 * 269.97498 * 6 5 4 8 8 C 1.52991 * 109.47307 * 180.02562 * 7 6 5 9 9 N 1.46500 * 109.47336 * 180.02562 * 8 7 6 10 10 C 1.34775 * 120.00332 * 179.97438 * 9 8 7 11 11 O 1.21545 * 119.99783 * 359.97438 * 10 9 8 12 12 C 1.47861 * 119.99867 * 179.97438 * 10 9 8 13 13 C 1.39666 * 120.10294 * 359.72326 * 12 10 9 14 14 C 1.38043 * 120.03486 * 179.74391 * 13 12 10 15 15 C 1.38175 * 120.24832 * 0.55536 * 14 13 12 16 16 C 1.39180 * 120.20127 * 359.70213 * 15 14 13 17 17 S 1.76195 * 120.02228 * 179.97438 * 16 15 14 18 18 C 1.76196 * 100.00318 * 265.52563 * 17 16 15 19 19 H 1.08002 * 119.99516 * 5.12015 * 18 17 16 20 20 C 1.38721 * 120.00153 * 185.12090 * 18 17 16 21 21 N 1.31623 * 120.00186 * 0.02562 * 20 18 17 22 22 Si 1.86802 * 119.99983 * 179.97438 * 20 18 17 23 23 H 1.48499 * 109.47008 * 359.97438 * 22 20 18 24 24 H 1.48499 * 109.47085 * 119.99774 * 22 20 18 25 25 H 1.48499 * 109.47352 * 239.99648 * 22 20 18 26 26 C 1.38884 * 119.95631 * 0.02562 * 16 15 14 27 27 N 1.31139 * 106.89553 * 359.77033 * 5 4 3 28 28 H 1.08990 * 109.47050 * 90.01957 * 1 2 3 29 29 H 1.09000 * 109.47035 * 210.02477 * 1 2 3 30 30 H 1.09000 * 109.46552 * 330.01819 * 1 2 3 31 31 H 1.08994 * 109.47158 * 29.97388 * 6 5 4 32 32 H 1.09001 * 109.47146 * 149.97765 * 6 5 4 33 33 H 1.09002 * 109.46677 * 300.00244 * 7 6 5 34 34 H 1.08999 * 109.46720 * 59.99541 * 7 6 5 35 35 H 1.09006 * 109.47284 * 300.00210 * 8 7 6 36 36 H 1.08999 * 109.47686 * 60.00034 * 8 7 6 37 37 H 0.97006 * 119.99877 * 359.97438 * 9 8 7 38 38 H 1.07999 * 119.98024 * 0.02562 * 13 12 10 39 39 H 1.08009 * 119.87700 * 180.25692 * 14 13 12 40 40 H 1.08004 * 119.90022 * 179.72319 * 15 14 13 41 41 H 0.97000 * 119.99806 * 180.02562 * 21 20 18 42 42 H 1.08000 * 120.12070 * 180.02562 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2761 1.0474 0.0000 4 8 3.4419 0.7123 0.0005 5 6 3.5299 -0.6212 0.0015 6 6 4.7969 -1.4371 0.0029 7 6 5.2264 -1.7147 -1.4392 8 6 6.5124 -2.5436 -1.4378 9 7 6.9239 -2.8089 -2.8185 10 6 8.0382 -3.5264 -3.0636 11 8 8.7019 -3.9530 -2.1390 12 6 8.4531 -3.7946 -4.4572 13 6 7.6889 -3.3103 -5.5212 14 6 8.0805 -3.5570 -6.8218 15 6 9.2219 -4.2926 -7.0774 16 6 9.9881 -4.7846 -6.0247 17 16 11.4424 -5.7226 -6.3561 18 6 10.7793 -7.3531 -6.2781 19 1 9.7167 -7.4983 -6.1508 20 6 11.6220 -8.4502 -6.3803 21 7 12.9171 -8.2732 -6.5349 22 14 10.9190 -10.1789 -6.2969 23 1 9.4465 -10.1064 -6.1190 24 1 11.2310 -10.9014 -7.5562 25 1 11.5207 -10.9032 -5.1486 26 6 9.6050 -4.5366 -4.7130 27 7 2.3029 -1.0842 0.0065 28 1 -0.3633 -0.0004 -1.0276 29 1 -0.3633 -0.8898 0.5142 30 1 -0.3632 0.8902 0.5136 31 1 5.5840 -0.8850 0.5164 32 1 4.6204 -2.3816 0.5176 33 1 4.4393 -2.2668 -1.9528 34 1 5.4029 -0.7703 -1.9539 35 1 7.2997 -1.9919 -0.9240 36 1 6.3355 -3.4880 -0.9232 37 1 6.3944 -2.4681 -3.5565 38 1 6.7936 -2.7386 -5.3263 39 1 7.4898 -3.1777 -7.6426 40 1 9.5206 -4.4860 -8.0971 41 1 13.5062 -9.0404 -6.6067 42 1 10.1978 -4.9168 -3.8942 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000079540708.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:02:47 Heat of formation + Delta-G solvation = 42.983240 kcal Electronic energy + Delta-G solvation = -25404.792946 eV Core-core repulsion = 21478.896741 eV Total energy + Delta-G solvation = -3925.896205 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.109 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -46.04845 -40.01854 -37.97184 -36.79844 -36.27993 -34.39536 -32.51666 -32.29036 -30.82728 -30.51964 -29.64060 -27.38386 -25.58033 -24.26770 -23.60709 -22.67659 -22.02367 -21.69385 -20.38401 -18.63202 -18.26765 -17.88267 -17.38095 -16.46387 -16.18435 -15.84665 -15.34949 -14.94530 -14.85654 -14.81645 -14.35132 -14.28021 -14.10191 -13.69897 -13.47539 -13.40896 -13.19495 -13.13560 -12.92324 -12.60019 -12.24830 -12.10227 -11.79568 -11.65715 -11.53234 -11.44520 -11.16958 -11.13224 -11.10985 -10.71443 -10.36127 -9.99441 -9.81592 -9.26322 -9.17754 -9.02758 -8.61192 -8.04522 -6.72268 -6.29558 -4.03558 0.65845 1.13426 1.64352 1.73518 2.28433 2.98446 3.01553 3.17353 3.19307 3.22495 3.28425 3.46243 3.56435 4.06955 4.21647 4.24614 4.33063 4.38583 4.60437 4.82705 4.86359 4.86525 4.89939 5.01488 5.05434 5.07452 5.13234 5.21358 5.25454 5.40277 5.46496 5.49663 5.57803 5.60123 5.72601 5.85139 5.96196 6.22388 6.25834 6.55518 6.61261 6.91044 7.16500 7.40667 7.57036 7.70166 8.22704 8.32109 9.16494 10.77213 Molecular weight = 347.11amu Principal moments of inertia in cm(-1) A = 0.019926 B = 0.001634 C = 0.001601 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1404.838946 B =17136.932563 C =17487.376162 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 C 0.167 3.833 3 N -0.387 5.387 4 O 0.078 5.922 5 C 0.187 3.813 6 C -0.025 4.025 7 C -0.130 4.130 8 C 0.122 3.878 9 N -0.734 5.734 10 C 0.565 3.435 11 O -0.532 6.532 12 C -0.156 4.156 13 C -0.090 4.090 14 C -0.141 4.141 15 C -0.055 4.055 16 C -0.107 4.107 17 S -0.035 6.035 18 C -0.520 4.520 19 H 0.076 0.924 20 C 0.073 3.927 21 N -0.870 5.870 22 Si 0.921 3.079 23 H -0.271 1.271 24 H -0.279 1.279 25 H -0.279 1.279 26 C -0.018 4.018 27 N -0.481 5.481 28 H 0.089 0.911 29 H 0.092 0.908 30 H 0.087 0.913 31 H 0.109 0.891 32 H 0.117 0.883 33 H 0.081 0.919 34 H 0.079 0.921 35 H 0.074 0.926 36 H 0.074 0.926 37 H 0.400 0.600 38 H 0.117 0.883 39 H 0.123 0.877 40 H 0.132 0.868 41 H 0.269 0.731 42 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.361 16.930 10.004 29.035 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.105 4.105 3 N -0.096 5.096 4 O 0.020 5.980 5 C -0.033 4.033 6 C -0.064 4.064 7 C -0.169 4.169 8 C -0.002 4.002 9 N -0.388 5.388 10 C 0.354 3.646 11 O -0.409 6.409 12 C -0.160 4.160 13 C -0.109 4.109 14 C -0.161 4.161 15 C -0.076 4.076 16 C -0.218 4.218 17 S 0.200 5.800 18 C -0.667 4.667 19 H 0.095 0.905 20 C -0.136 4.136 21 N -0.505 5.505 22 Si 0.747 3.253 23 H -0.195 1.195 24 H -0.205 1.205 25 H -0.204 1.204 26 C -0.040 4.040 27 N -0.215 5.215 28 H 0.108 0.892 29 H 0.111 0.889 30 H 0.105 0.895 31 H 0.128 0.872 32 H 0.135 0.865 33 H 0.099 0.901 34 H 0.098 0.902 35 H 0.092 0.908 36 H 0.092 0.908 37 H 0.235 0.765 38 H 0.134 0.866 39 H 0.141 0.859 40 H 0.149 0.851 41 H 0.079 0.921 42 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -20.218 17.353 10.469 28.627 hybrid contribution -1.905 -1.261 -0.064 2.285 sum -22.122 16.092 10.405 29.268 Atomic orbital electron populations 1.20158 0.82865 1.04745 1.04438 1.25953 1.00699 0.83470 1.00396 1.74661 0.89397 1.23920 1.21583 1.85304 1.22363 1.24793 1.65574 1.28786 0.96992 0.82206 0.95356 1.20165 0.88134 0.98790 0.99333 1.21794 0.98160 1.01704 0.95247 1.21234 0.95164 0.99969 0.83812 1.45833 1.27782 1.56761 1.08406 1.18391 0.79878 0.77262 0.89110 1.90780 1.53531 1.50872 1.45750 1.19843 0.99115 1.05239 0.91845 1.21125 0.98270 0.98835 0.92685 1.21062 0.97941 1.00910 0.96196 1.21970 0.92491 0.93528 0.99584 1.22868 1.03040 1.01800 0.94051 1.83614 1.04493 1.00491 1.91438 1.22883 0.96171 0.89690 1.57972 0.90549 1.25001 0.94675 0.99536 0.94371 1.69996 1.02669 1.31448 1.46382 0.86068 0.79225 0.82041 0.77969 1.19497 1.20479 1.20428 1.21961 0.93090 0.91751 0.97175 1.71939 0.99755 1.29396 1.20430 0.89211 0.88932 0.89467 0.87227 0.86517 0.90061 0.90201 0.90766 0.90793 0.76491 0.86551 0.85860 0.85054 0.92098 0.84269 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.31 10.51 36.01 0.38 0.06 16 2 C 0.17 1.45 8.22 -156.37 -1.28 0.17 16 3 N -0.39 -3.80 12.16 30.90 0.38 -3.42 16 4 O 0.08 0.68 11.31 18.10 0.20 0.88 16 5 C 0.19 1.36 7.77 -13.05 -0.10 1.26 16 6 C -0.02 -0.10 5.84 -27.88 -0.16 -0.26 16 7 C -0.13 -0.61 5.31 -26.73 -0.14 -0.75 16 8 C 0.12 0.92 5.67 -4.05 -0.02 0.89 16 9 N -0.73 -7.33 5.51 -61.25 -0.34 -7.66 16 10 C 0.57 8.54 7.77 -12.32 -0.10 8.45 16 11 O -0.53 -10.03 16.34 5.33 0.09 -9.95 16 12 C -0.16 -2.52 5.87 -105.00 -0.62 -3.13 16 13 C -0.09 -1.18 9.54 -39.12 -0.37 -1.55 16 14 C -0.14 -1.96 10.02 -39.68 -0.40 -2.36 16 15 C -0.05 -0.96 9.79 -39.25 -0.38 -1.34 16 16 C -0.11 -2.25 5.45 -38.99 -0.21 -2.46 16 17 S -0.03 -0.89 21.40 -107.50 -2.30 -3.19 16 18 C -0.52 -14.59 9.46 30.91 0.29 -14.30 16 19 H 0.08 2.13 7.79 -52.49 -0.41 1.72 16 20 C 0.07 2.04 5.49 -17.46 -0.10 1.95 16 21 N -0.87 -25.30 13.22 55.49 0.73 -24.57 16 22 Si 0.92 21.37 29.55 -169.99 -5.02 16.34 16 23 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 24 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 25 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 26 C -0.02 -0.36 9.34 -38.92 -0.36 -0.72 16 27 N -0.48 -4.35 11.55 -9.87 -0.11 -4.46 16 28 H 0.09 0.34 8.14 -51.93 -0.42 -0.08 16 29 H 0.09 0.37 8.14 -51.93 -0.42 -0.06 16 30 H 0.09 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.11 0.24 8.14 -51.93 -0.42 -0.18 16 32 H 0.12 0.40 8.14 -51.93 -0.42 -0.02 16 33 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 34 H 0.08 0.34 8.14 -51.93 -0.42 -0.09 16 35 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 37 H 0.40 2.94 6.50 -40.82 -0.27 2.68 16 38 H 0.12 1.02 6.40 -52.49 -0.34 0.69 16 39 H 0.12 1.30 8.06 -52.48 -0.42 0.87 16 40 H 0.13 2.19 8.06 -52.48 -0.42 1.77 16 41 H 0.27 7.28 8.31 -40.82 -0.34 6.94 16 42 H 0.14 3.01 7.65 -52.49 -0.40 2.61 16 LS Contribution 384.47 15.07 5.79 5.79 Total: -1.00 -35.57 384.47 -9.36 -44.93 By element: Atomic # 1 Polarization: 4.61 SS G_CDS: -5.20 Total: -0.58 kcal Atomic # 6 Polarization: -10.53 SS G_CDS: -3.58 Total: -14.11 kcal Atomic # 7 Polarization: -40.77 SS G_CDS: 0.66 Total: -40.11 kcal Atomic # 8 Polarization: -9.36 SS G_CDS: 0.29 Total: -9.07 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.34 kcal Atomic # 16 Polarization: -0.89 SS G_CDS: -2.30 Total: -3.19 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -35.57 -9.36 -44.93 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000079540708.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.911 kcal (2) G-P(sol) polarization free energy of solvation -35.568 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.344 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.360 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.928 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.983 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds