Wall clock time and date at job start Wed Apr 1 2020 04:02:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.29946 * 126.29051 * 2 1 4 4 O 1.21297 * 110.25256 * 179.97438 * 3 2 1 5 5 C 1.33643 * 109.81332 * 359.97438 * 4 3 2 6 6 C 1.50700 * 126.55372 * 180.02562 * 5 4 3 7 7 C 1.53007 * 109.47233 * 269.97498 * 6 5 4 8 8 C 1.52991 * 109.47307 * 180.02562 * 7 6 5 9 9 N 1.46500 * 109.47336 * 180.02562 * 8 7 6 10 10 C 1.34775 * 120.00332 * 179.97438 * 9 8 7 11 11 O 1.21545 * 119.99783 * 359.97438 * 10 9 8 12 12 C 1.47861 * 119.99867 * 179.97438 * 10 9 8 13 13 C 1.39666 * 120.10294 * 359.72326 * 12 10 9 14 14 C 1.38043 * 120.03486 * 179.74391 * 13 12 10 15 15 C 1.38175 * 120.24832 * 0.55536 * 14 13 12 16 16 C 1.39180 * 120.20127 * 359.70213 * 15 14 13 17 17 S 1.76195 * 120.02228 * 179.97438 * 16 15 14 18 18 C 1.76196 * 100.00318 * 265.52563 * 17 16 15 19 19 H 1.08002 * 119.99516 * 5.12015 * 18 17 16 20 20 C 1.38721 * 120.00153 * 185.12090 * 18 17 16 21 21 N 1.31623 * 120.00186 * 0.02562 * 20 18 17 22 22 Si 1.86802 * 119.99983 * 179.97438 * 20 18 17 23 23 H 1.48499 * 109.47008 * 359.97438 * 22 20 18 24 24 H 1.48499 * 109.47085 * 119.99774 * 22 20 18 25 25 H 1.48499 * 109.47352 * 239.99648 * 22 20 18 26 26 C 1.38884 * 119.95631 * 0.02562 * 16 15 14 27 27 N 1.31139 * 106.89553 * 359.77033 * 5 4 3 28 28 H 1.08990 * 109.47050 * 90.01957 * 1 2 3 29 29 H 1.09000 * 109.47035 * 210.02477 * 1 2 3 30 30 H 1.09000 * 109.46552 * 330.01819 * 1 2 3 31 31 H 1.08994 * 109.47158 * 29.97388 * 6 5 4 32 32 H 1.09001 * 109.47146 * 149.97765 * 6 5 4 33 33 H 1.09002 * 109.46677 * 300.00244 * 7 6 5 34 34 H 1.08999 * 109.46720 * 59.99541 * 7 6 5 35 35 H 1.09006 * 109.47284 * 300.00210 * 8 7 6 36 36 H 1.08999 * 109.47686 * 60.00034 * 8 7 6 37 37 H 0.97006 * 119.99877 * 359.97438 * 9 8 7 38 38 H 1.07999 * 119.98024 * 0.02562 * 13 12 10 39 39 H 1.08009 * 119.87700 * 180.25692 * 14 13 12 40 40 H 1.08004 * 119.90022 * 179.72319 * 15 14 13 41 41 H 0.97000 * 119.99806 * 180.02562 * 21 20 18 42 42 H 1.08000 * 120.12070 * 180.02562 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2761 1.0474 0.0000 4 8 3.4419 0.7123 0.0005 5 6 3.5299 -0.6212 0.0015 6 6 4.7969 -1.4371 0.0029 7 6 5.2264 -1.7147 -1.4392 8 6 6.5124 -2.5436 -1.4378 9 7 6.9239 -2.8089 -2.8185 10 6 8.0382 -3.5264 -3.0636 11 8 8.7019 -3.9530 -2.1390 12 6 8.4531 -3.7946 -4.4572 13 6 7.6889 -3.3103 -5.5212 14 6 8.0805 -3.5570 -6.8218 15 6 9.2219 -4.2926 -7.0774 16 6 9.9881 -4.7846 -6.0247 17 16 11.4424 -5.7226 -6.3561 18 6 10.7793 -7.3531 -6.2781 19 1 9.7167 -7.4983 -6.1508 20 6 11.6220 -8.4502 -6.3803 21 7 12.9171 -8.2732 -6.5349 22 14 10.9190 -10.1789 -6.2969 23 1 9.4465 -10.1064 -6.1190 24 1 11.2310 -10.9014 -7.5562 25 1 11.5207 -10.9032 -5.1486 26 6 9.6050 -4.5366 -4.7130 27 7 2.3029 -1.0842 0.0065 28 1 -0.3633 -0.0004 -1.0276 29 1 -0.3633 -0.8898 0.5142 30 1 -0.3632 0.8902 0.5136 31 1 5.5840 -0.8850 0.5164 32 1 4.6204 -2.3816 0.5176 33 1 4.4393 -2.2668 -1.9528 34 1 5.4029 -0.7703 -1.9539 35 1 7.2997 -1.9919 -0.9240 36 1 6.3355 -3.4880 -0.9232 37 1 6.3944 -2.4681 -3.5565 38 1 6.7936 -2.7386 -5.3263 39 1 7.4898 -3.1777 -7.6426 40 1 9.5206 -4.4860 -8.0971 41 1 13.5062 -9.0404 -6.6067 42 1 10.1978 -4.9168 -3.8942 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000079540708.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:02:45 Heat of formation + Delta-G solvation = 17.892324 kcal Electronic energy + Delta-G solvation = -25405.880970 eV Core-core repulsion = 21478.896741 eV Total energy + Delta-G solvation = -3926.984229 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.109 amu Computer time = 2.41 seconds Orbital eigenvalues (eV) -46.64313 -41.19237 -39.20042 -37.43781 -36.93316 -35.17488 -34.65193 -33.08132 -32.00011 -31.75636 -30.11930 -28.08186 -27.73828 -25.08886 -24.47295 -23.72400 -22.99092 -22.22968 -21.51250 -19.98197 -19.23510 -18.88732 -18.46188 -17.40431 -17.00064 -16.93427 -16.81995 -16.60486 -15.95789 -15.65284 -15.58681 -15.12973 -14.85725 -14.62459 -14.56157 -14.48491 -13.99890 -13.87576 -13.66596 -13.54794 -13.25781 -13.11538 -13.02816 -12.98202 -12.66061 -12.56530 -12.37244 -12.31459 -12.11319 -11.87584 -11.73032 -11.26402 -11.15202 -10.90125 -10.73005 -10.23874 -9.87073 -9.68135 -8.79949 -8.39140 -6.19071 -0.16129 0.09772 0.27275 1.15629 1.30006 1.36480 1.46851 1.65945 1.76342 1.83109 2.14283 2.25231 2.68365 2.82545 2.93898 3.06446 3.42322 3.66108 3.75113 3.95914 3.97800 3.98991 4.07911 4.17024 4.37819 4.45992 4.47803 4.51020 4.55957 4.61340 4.67489 4.72379 4.84781 4.90341 4.94334 5.05709 5.12304 5.14614 5.23946 5.33688 5.39099 5.39603 5.52562 5.88195 6.16148 6.48588 7.01362 7.13290 7.16696 8.68111 Molecular weight = 347.11amu Principal moments of inertia in cm(-1) A = 0.019926 B = 0.001634 C = 0.001601 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1404.838946 B =17136.932563 C =17487.376162 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 C 0.160 3.840 3 N -0.413 5.413 4 O 0.069 5.931 5 C 0.196 3.804 6 C -0.023 4.023 7 C -0.115 4.115 8 C 0.119 3.881 9 N -0.709 5.709 10 C 0.563 3.437 11 O -0.581 6.581 12 C -0.158 4.158 13 C -0.062 4.062 14 C -0.122 4.122 15 C -0.064 4.064 16 C -0.131 4.131 17 S -0.096 6.096 18 C -0.536 4.536 19 H 0.067 0.933 20 C 0.020 3.980 21 N -0.906 5.906 22 Si 0.992 3.008 23 H -0.266 1.266 24 H -0.266 1.266 25 H -0.272 1.272 26 C -0.045 4.045 27 N -0.506 5.506 28 H 0.102 0.898 29 H 0.101 0.899 30 H 0.096 0.904 31 H 0.131 0.869 32 H 0.125 0.875 33 H 0.083 0.917 34 H 0.092 0.908 35 H 0.075 0.925 36 H 0.068 0.932 37 H 0.416 0.584 38 H 0.176 0.824 39 H 0.175 0.825 40 H 0.133 0.867 41 H 0.274 0.726 42 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.097 18.158 9.655 32.447 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.112 4.112 3 N -0.125 5.125 4 O 0.013 5.987 5 C -0.024 4.024 6 C -0.062 4.062 7 C -0.154 4.154 8 C -0.004 4.004 9 N -0.362 5.362 10 C 0.351 3.649 11 O -0.461 6.461 12 C -0.163 4.163 13 C -0.081 4.081 14 C -0.142 4.142 15 C -0.085 4.085 16 C -0.242 4.242 17 S 0.138 5.862 18 C -0.683 4.683 19 H 0.086 0.914 20 C -0.186 4.186 21 N -0.542 5.542 22 Si 0.814 3.186 23 H -0.190 1.190 24 H -0.190 1.190 25 H -0.198 1.198 26 C -0.067 4.067 27 N -0.240 5.240 28 H 0.120 0.880 29 H 0.120 0.880 30 H 0.115 0.885 31 H 0.150 0.850 32 H 0.144 0.856 33 H 0.101 0.899 34 H 0.110 0.890 35 H 0.094 0.906 36 H 0.086 0.914 37 H 0.255 0.745 38 H 0.193 0.807 39 H 0.192 0.808 40 H 0.151 0.849 41 H 0.083 0.917 42 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -23.985 18.621 10.105 32.002 hybrid contribution -0.871 -1.479 0.086 1.719 sum -24.856 17.142 10.190 31.867 Atomic orbital electron populations 1.20335 0.80824 1.05637 1.05477 1.26595 1.02083 0.83155 0.99398 1.74653 0.89904 1.24794 1.23102 1.85269 1.22080 1.25416 1.65914 1.29304 0.97482 0.81882 0.93739 1.20333 0.87426 0.99088 0.99347 1.21644 0.96400 1.01643 0.95714 1.21393 0.96550 1.00316 0.82170 1.45656 1.25795 1.54461 1.10288 1.18302 0.80862 0.77680 0.88070 1.90765 1.55431 1.53134 1.46800 1.19996 0.98006 1.04437 0.93845 1.21726 0.98652 0.96549 0.91159 1.21555 0.96075 0.98427 0.98108 1.22072 0.93629 0.94175 0.98625 1.22509 1.02431 1.03556 0.95692 1.83484 1.09571 1.01180 1.91930 1.23104 0.95907 0.91197 1.58126 0.91450 1.26001 0.94975 1.03895 0.93693 1.70115 1.04001 1.32850 1.47235 0.84999 0.78528 0.76544 0.78524 1.18992 1.19049 1.19762 1.21642 0.95085 0.94257 0.95716 1.71965 1.00555 1.29872 1.21621 0.87987 0.88049 0.88548 0.85049 0.85643 0.89876 0.88980 0.90640 0.91355 0.74505 0.80720 0.80811 0.84866 0.91704 0.87911 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.53 10.51 71.24 0.75 0.22 16 2 C 0.16 2.55 8.22 138.46 1.14 3.69 16 3 N -0.41 -7.62 12.16 -60.32 -0.73 -8.35 16 4 O 0.07 1.09 11.31 74.84 0.85 1.94 16 5 C 0.20 2.44 7.77 88.38 0.69 3.12 16 6 C -0.02 -0.12 5.84 29.85 0.17 0.05 16 7 C -0.12 -0.66 5.31 30.59 0.16 -0.50 16 8 C 0.12 1.45 5.67 86.38 0.49 1.94 16 9 N -0.71 -11.75 5.51 -465.97 -2.57 -14.32 16 10 C 0.56 16.29 7.77 86.79 0.67 16.96 16 11 O -0.58 -22.32 16.34 -3.86 -0.06 -22.38 16 12 C -0.16 -4.89 5.87 -20.11 -0.12 -5.01 16 13 C -0.06 -1.33 9.54 22.57 0.22 -1.12 16 14 C -0.12 -2.84 10.02 22.21 0.22 -2.62 16 15 C -0.06 -2.19 9.79 22.48 0.22 -1.97 16 16 C -0.13 -5.72 5.45 22.65 0.12 -5.60 16 17 S -0.10 -5.27 21.40 -56.49 -1.21 -6.48 16 18 C -0.54 -31.53 9.46 67.94 0.64 -30.89 16 19 H 0.07 3.93 7.79 -2.91 -0.02 3.90 16 20 C 0.02 1.13 5.49 84.84 0.47 1.59 16 21 N -0.91 -54.65 13.22 21.63 0.29 -54.37 16 22 Si 0.99 44.66 29.55 68.60 2.03 46.68 16 23 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 24 H -0.27 -11.30 7.11 99.48 0.71 -10.59 16 25 H -0.27 -11.89 7.11 99.48 0.71 -11.19 16 26 C -0.05 -1.88 9.34 22.70 0.21 -1.67 16 27 N -0.51 -8.24 11.55 -303.19 -3.50 -11.74 16 28 H 0.10 0.57 8.14 -2.39 -0.02 0.55 16 29 H 0.10 0.63 8.14 -2.39 -0.02 0.61 16 30 H 0.10 0.59 8.14 -2.39 -0.02 0.57 16 31 H 0.13 0.16 8.14 -2.39 -0.02 0.14 16 32 H 0.13 0.51 8.14 -2.39 -0.02 0.49 16 33 H 0.08 0.51 8.14 -2.39 -0.02 0.49 16 34 H 0.09 0.37 8.14 -2.39 -0.02 0.35 16 35 H 0.08 0.97 8.14 -2.38 -0.02 0.95 16 36 H 0.07 0.97 8.14 -2.39 -0.02 0.96 16 37 H 0.42 3.91 6.50 -92.70 -0.60 3.31 16 38 H 0.18 1.72 6.40 -2.91 -0.02 1.71 16 39 H 0.17 2.42 8.06 -2.91 -0.02 2.40 16 40 H 0.13 4.40 8.06 -2.91 -0.02 4.38 16 41 H 0.27 15.25 8.31 -92.71 -0.77 14.48 16 42 H 0.10 4.92 7.65 -2.91 -0.02 4.89 16 Total: -1.00 -84.93 384.47 1.61 -83.32 By element: Atomic # 1 Polarization: 7.05 SS G_CDS: 0.46 Total: 7.51 kcal Atomic # 6 Polarization: -27.87 SS G_CDS: 6.06 Total: -21.81 kcal Atomic # 7 Polarization: -82.27 SS G_CDS: -6.52 Total: -88.79 kcal Atomic # 8 Polarization: -21.23 SS G_CDS: 0.78 Total: -20.45 kcal Atomic # 14 Polarization: 44.66 SS G_CDS: 2.03 Total: 46.68 kcal Atomic # 16 Polarization: -5.27 SS G_CDS: -1.21 Total: -6.48 kcal Total: -84.93 1.61 -83.32 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000079540708.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.215 kcal (2) G-P(sol) polarization free energy of solvation -84.929 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.286 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.606 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.322 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.892 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.41 seconds