Wall clock time and date at job start Wed Apr 1 2020 05:44:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42893 * 114.00135 * 2 1 4 4 H 1.09003 * 109.47472 * 330.00321 * 3 2 1 5 5 C 1.53003 * 109.47104 * 90.00240 * 3 2 1 6 6 C 1.50704 * 109.47303 * 210.00454 * 3 2 1 7 7 N 1.30169 * 121.06523 * 315.02226 * 6 3 2 8 8 S 1.69952 * 105.74135 * 179.71330 * 7 6 3 9 9 C 1.72294 * 94.56355 * 0.34496 * 8 7 6 10 10 N 1.38790 * 127.50146 * 179.91186 * 9 8 7 11 11 C 1.34780 * 119.99880 * 359.68978 * 10 9 8 12 12 O 1.21271 * 119.99873 * 359.97438 * 11 10 9 13 13 C 1.50700 * 119.99771 * 179.97438 * 11 10 9 14 14 C 1.50697 * 109.46974 * 179.97438 * 13 11 10 15 15 C 1.37639 * 120.12874 * 265.00334 * 14 13 11 16 16 C 1.38619 * 120.24845 * 180.25000 * 15 14 13 17 17 C 1.38655 * 120.49866 * 359.44811 * 16 15 14 18 18 C 1.37600 * 120.24725 * 0.55522 * 17 16 15 19 19 C 1.40696 * 120.12697 * 84.98234 * 14 13 11 20 20 C 1.41390 * 120.24641 * 0.02562 * 19 14 13 21 21 H 1.08004 * 119.99865 * 334.08674 * 20 19 14 22 22 C 1.39940 * 120.00399 * 154.09052 * 20 19 14 23 23 N 1.30822 * 119.99912 * 343.61139 * 22 20 19 24 24 Si 1.86803 * 120.00192 * 163.62242 * 22 20 19 25 25 H 1.48494 * 109.47012 * 359.97438 * 24 22 20 26 26 H 1.48492 * 109.47407 * 119.99663 * 24 22 20 27 27 H 1.48508 * 109.46756 * 239.99409 * 24 22 20 28 28 N 1.31226 * 121.06841 * 135.00385 * 6 3 2 29 29 H 1.08999 * 109.46357 * 299.99742 * 1 2 3 30 30 H 1.08992 * 109.46988 * 59.99738 * 1 2 3 31 31 H 1.08996 * 109.46982 * 180.02562 * 1 2 3 32 32 H 1.09005 * 109.46983 * 179.97438 * 5 3 2 33 33 H 1.09002 * 109.47249 * 300.00002 * 5 3 2 34 34 H 1.08999 * 109.46776 * 60.00464 * 5 3 2 35 35 H 0.97003 * 120.00326 * 179.67671 * 10 9 8 36 36 H 1.09005 * 109.46844 * 60.00157 * 13 11 10 37 37 H 1.08998 * 109.47432 * 299.99913 * 13 11 10 38 38 H 1.07995 * 119.87991 * 359.97438 * 15 14 13 39 39 H 1.07999 * 119.74930 * 179.70024 * 16 15 14 40 40 H 1.08004 * 119.87487 * 180.29445 * 17 16 15 41 41 H 1.08002 * 120.12509 * 179.74760 * 18 17 16 42 42 H 0.97001 * 120.00439 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3450 1.9994 -0.5138 5 6 2.2178 1.7713 1.4425 6 6 3.3387 1.2639 -0.7105 7 7 4.1963 0.3131 -0.4762 8 16 5.5308 0.6390 -1.4769 9 6 4.8471 2.0671 -2.1563 10 7 5.4147 2.9073 -3.1041 11 6 6.6430 2.6414 -3.5910 12 8 7.2524 1.6683 -3.2006 13 6 7.2591 3.5534 -4.6204 14 6 8.6245 3.0377 -4.9954 15 6 9.7457 3.5309 -4.3677 16 6 11.0033 3.0621 -4.7144 17 6 11.1463 2.0846 -5.6873 18 6 10.0394 1.5771 -6.3280 19 6 8.7581 2.0498 -5.9883 20 6 7.6135 1.5357 -6.6401 21 1 6.6551 1.5538 -6.1426 22 6 7.7225 1.0034 -7.9297 23 7 8.7794 1.2609 -8.6564 24 14 6.3587 -0.0745 -8.6136 25 1 5.2816 -0.2121 -7.6007 26 1 5.8057 0.5475 -9.8434 27 1 6.9050 -1.4163 -8.9402 28 7 3.6677 2.1848 -1.5855 29 1 -0.3632 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0276 0.0005 32 1 2.6616 2.7669 1.4425 33 1 1.2570 1.8014 1.9564 34 1 2.8831 1.0773 1.9562 35 1 4.9273 3.6857 -3.4161 36 1 7.3513 4.5578 -4.2072 37 1 6.6251 3.5818 -5.5066 38 1 9.6457 4.2893 -3.6053 39 1 11.8780 3.4582 -4.2200 40 1 12.1306 1.7232 -5.9462 41 1 10.1534 0.8187 -7.0885 42 1 8.8551 0.8916 -9.5502 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000800989716.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:44:22 Heat of formation + Delta-G solvation = -3.772471 kcal Electronic energy + Delta-G solvation = -27095.554468 eV Core-core repulsion = 23167.630783 eV Total energy + Delta-G solvation = -3927.923685 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.109 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -40.60784 -39.86666 -38.09779 -37.53649 -35.08233 -33.73362 -32.38211 -31.77193 -30.94383 -29.57862 -27.44514 -27.05189 -25.75403 -25.05810 -22.93830 -21.57730 -21.05079 -20.37130 -19.51205 -18.53566 -17.56933 -17.26635 -16.72250 -16.30789 -16.03164 -15.91450 -15.55094 -15.30659 -14.64588 -14.52970 -13.95953 -13.62433 -13.60659 -13.50078 -13.02212 -12.69827 -12.67333 -12.21472 -11.91819 -11.75715 -11.67861 -11.59664 -11.51663 -11.28853 -11.19399 -11.12595 -11.08342 -10.80559 -10.47590 -10.01788 -9.92476 -9.60909 -9.58587 -9.56359 -9.49841 -9.26156 -8.61987 -7.45401 -7.42377 -6.84557 -4.47102 0.56451 1.04769 1.88570 2.28891 2.38717 2.73442 2.89799 2.96129 3.03203 3.07617 3.18476 3.44656 3.86185 4.25876 4.55484 4.73063 4.84684 5.03352 5.04521 5.12594 5.15689 5.37203 5.44611 5.54680 5.57195 5.64799 5.75539 5.84544 5.91355 6.06492 6.15933 6.23493 6.40478 6.65317 6.81814 6.97309 6.99979 7.17755 7.30012 7.52125 7.65438 7.79401 7.93236 8.01110 8.04161 8.18706 8.53143 8.78964 8.88784 10.09355 Molecular weight = 347.11amu Principal moments of inertia in cm(-1) A = 0.013392 B = 0.002960 C = 0.002579 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2090.313911 B = 9457.747746 C =10852.703587 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.371 6.371 3 C 0.179 3.821 4 H 0.089 0.911 5 C -0.166 4.166 6 C 0.280 3.720 7 N -0.492 5.492 8 S 0.328 5.672 9 C 0.290 3.710 10 N -0.618 5.618 11 C 0.509 3.491 12 O -0.471 6.471 13 C -0.058 4.058 14 C -0.196 4.196 15 C -0.075 4.075 16 C -0.239 4.239 17 C -0.103 4.103 18 C -0.157 4.157 19 C 0.131 3.869 20 C -0.458 4.458 21 H 0.073 0.927 22 C 0.079 3.921 23 N -0.790 5.790 24 Si 0.901 3.099 25 H -0.261 1.261 26 H -0.273 1.273 27 H -0.270 1.270 28 N -0.559 5.559 29 H 0.044 0.956 30 H 0.044 0.956 31 H 0.089 0.911 32 H 0.070 0.930 33 H 0.068 0.932 34 H 0.072 0.928 35 H 0.424 0.576 36 H 0.089 0.911 37 H 0.109 0.891 38 H 0.086 0.914 39 H 0.087 0.913 40 H 0.088 0.912 41 H 0.118 0.882 42 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.670 3.892 11.041 17.250 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.288 6.288 3 C 0.116 3.884 4 H 0.107 0.893 5 C -0.225 4.225 6 C -0.011 4.011 7 N -0.327 5.327 8 S 0.465 5.535 9 C -0.086 4.086 10 N -0.270 5.270 11 C 0.297 3.703 12 O -0.338 6.338 13 C -0.097 4.097 14 C -0.198 4.198 15 C -0.094 4.094 16 C -0.258 4.258 17 C -0.121 4.121 18 C -0.176 4.176 19 C 0.129 3.871 20 C -0.487 4.487 21 H 0.091 0.909 22 C -0.139 4.139 23 N -0.415 5.415 24 Si 0.725 3.275 25 H -0.185 1.185 26 H -0.199 1.199 27 H -0.195 1.195 28 N -0.293 5.293 29 H 0.062 0.938 30 H 0.062 0.938 31 H 0.107 0.893 32 H 0.089 0.911 33 H 0.087 0.913 34 H 0.091 0.909 35 H 0.263 0.737 36 H 0.107 0.893 37 H 0.127 0.873 38 H 0.104 0.896 39 H 0.105 0.895 40 H 0.106 0.894 41 H 0.136 0.864 42 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -11.368 1.981 11.440 16.249 hybrid contribution -1.677 0.881 -0.868 2.084 sum -13.045 2.862 10.572 17.034 Atomic orbital electron populations 1.22855 0.80583 1.03118 1.00107 1.88038 1.19717 1.26105 1.94953 1.20243 0.87536 0.85904 0.94758 0.89293 1.22229 1.03090 1.02195 0.94952 1.22540 0.97653 0.87426 0.93480 1.77359 1.04759 1.25957 1.24598 1.86058 1.20709 1.16543 1.30195 1.25149 0.92549 0.97050 0.93836 1.43410 1.18596 1.27213 1.37743 1.22319 0.78187 0.87469 0.82319 1.90706 1.59349 1.27339 1.56419 1.20259 0.97229 0.96181 0.96061 1.18923 0.90600 1.04055 1.06254 1.20306 0.92850 0.98581 0.97622 1.20328 0.95572 1.05171 1.04756 1.20716 0.97214 0.97407 0.96785 1.21313 0.91936 1.02363 1.02028 1.17330 0.93075 0.87743 0.88954 1.19485 0.95569 1.34831 0.98855 0.90872 1.25867 0.96563 0.94578 0.96939 1.69811 1.27616 1.34751 1.09314 0.86367 0.81504 0.80367 0.79218 1.18500 1.19872 1.19525 1.67184 1.15687 1.31002 1.15395 0.93777 0.93767 0.89279 0.91133 0.91271 0.90917 0.73674 0.89252 0.87343 0.89561 0.89479 0.89419 0.86428 0.90806 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 10.82 101.05 1.09 1.33 16 2 O -0.37 -4.64 10.23 -35.23 -0.36 -5.00 16 3 C 0.18 2.11 3.19 -27.88 -0.09 2.02 16 4 H 0.09 0.89 7.79 -51.93 -0.40 0.49 16 5 C -0.17 -1.58 9.51 37.16 0.35 -1.23 16 6 C 0.28 4.26 6.52 -159.05 -1.04 3.23 16 7 N -0.49 -8.30 12.02 29.53 0.36 -7.95 16 8 S 0.33 5.62 21.17 -107.50 -2.28 3.34 16 9 C 0.29 4.60 8.51 -85.96 -0.73 3.87 16 10 N -0.62 -8.69 5.40 -12.41 -0.07 -8.76 16 11 C 0.51 8.73 7.42 -10.98 -0.08 8.65 16 12 O -0.47 -9.82 13.79 5.56 0.08 -9.74 16 13 C -0.06 -0.97 5.18 -29.04 -0.15 -1.12 16 14 C -0.20 -4.28 4.43 -103.91 -0.46 -4.74 16 15 C -0.08 -1.59 9.66 -39.66 -0.38 -1.97 16 16 C -0.24 -5.21 10.05 -39.29 -0.39 -5.60 16 17 C -0.10 -2.37 10.02 -39.66 -0.40 -2.77 16 18 C -0.16 -3.97 8.68 -38.87 -0.34 -4.31 16 19 C 0.13 3.27 5.56 -106.83 -0.59 2.68 16 20 C -0.46 -11.30 8.14 -37.75 -0.31 -11.61 16 21 H 0.07 1.74 6.67 -52.48 -0.35 1.39 16 22 C 0.08 1.89 5.16 -17.34 -0.09 1.80 16 23 N -0.79 -19.49 10.97 55.55 0.61 -18.88 16 24 Si 0.90 18.26 29.59 -169.99 -5.03 13.23 16 25 H -0.26 -5.35 7.11 56.52 0.40 -4.95 16 26 H -0.27 -5.38 7.11 56.52 0.40 -4.98 16 27 H -0.27 -5.47 7.11 56.52 0.40 -5.07 16 28 N -0.56 -8.52 10.60 -14.48 -0.15 -8.67 16 29 H 0.04 0.27 7.87 -51.93 -0.41 -0.14 16 30 H 0.04 0.32 8.08 -51.93 -0.42 -0.10 16 31 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.07 0.50 7.87 -51.93 -0.41 0.09 16 34 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 35 H 0.42 4.39 8.82 -40.82 -0.36 4.03 16 36 H 0.09 1.17 8.05 -51.93 -0.42 0.76 16 37 H 0.11 1.76 7.06 -51.93 -0.37 1.39 16 38 H 0.09 1.57 8.06 -52.49 -0.42 1.14 16 39 H 0.09 1.68 8.06 -52.49 -0.42 1.26 16 40 H 0.09 1.81 8.06 -52.48 -0.42 1.39 16 41 H 0.12 3.08 6.22 -52.49 -0.33 2.76 16 42 H 0.28 6.33 8.30 -40.82 -0.34 5.99 16 LS Contribution 373.27 15.07 5.63 5.63 Total: -1.00 -30.41 373.27 -9.96 -40.38 By element: Atomic # 1 Polarization: 11.33 SS G_CDS: -5.13 Total: 6.20 kcal Atomic # 6 Polarization: -6.16 SS G_CDS: -3.61 Total: -9.77 kcal Atomic # 7 Polarization: -45.00 SS G_CDS: 0.74 Total: -44.26 kcal Atomic # 8 Polarization: -14.46 SS G_CDS: -0.28 Total: -14.74 kcal Atomic # 14 Polarization: 18.26 SS G_CDS: -5.03 Total: 13.23 kcal Atomic # 16 Polarization: 5.62 SS G_CDS: -2.28 Total: 3.34 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -30.41 -9.96 -40.38 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000800989716.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.604 kcal (2) G-P(sol) polarization free energy of solvation -30.414 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.189 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.962 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.376 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.772 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds